Wall clock time and date at job start Mon Mar 30 2020 04:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 120.00210 * 2 1 4 4 H 1.48494 * 109.46878 * 269.99966 * 3 2 1 5 5 H 1.48508 * 109.46746 * 29.99803 * 3 2 1 6 6 H 1.48503 * 109.47310 * 149.99533 * 3 2 1 7 7 C 1.37881 * 120.00150 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99974 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99905 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47023 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.47019 * 180.02562 * 10 9 7 12 12 N 1.30967 * 126.44299 * 89.99759 * 11 10 9 13 13 C 1.35202 * 105.58160 * 179.97438 * 12 11 10 14 14 C 1.48476 * 126.41718 * 180.02562 * 13 12 11 15 15 C 1.39636 * 120.17921 * 179.72108 * 14 13 12 16 16 C 1.38722 * 117.89702 * 180.29466 * 15 14 13 17 17 C 1.38668 * 118.05889 * 359.96324 * 16 15 14 18 18 N 1.32007 * 120.05196 * 0.03419 * 17 16 15 19 19 N 1.28342 * 122.30243 * 359.97438 * 18 17 16 20 20 N 1.30734 * 107.17928 * 0.26215 * 13 12 11 21 21 O 1.21292 * 110.09759 * 359.54679 * 20 13 12 22 22 H 0.97001 * 119.99692 * 0.02562 * 1 2 3 23 23 H 1.09005 * 109.46923 * 60.00118 * 9 7 2 24 24 H 1.08995 * 109.47247 * 300.00456 * 9 7 2 25 25 H 1.08993 * 109.46964 * 60.00071 * 10 9 7 26 26 H 1.08998 * 109.46781 * 299.99844 * 10 9 7 27 27 H 1.07998 * 121.05217 * 0.25752 * 15 14 13 28 28 H 1.07993 * 120.96643 * 179.97438 * 16 15 14 29 29 H 1.08001 * 119.97458 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6621 0.0027 11 6 1.4919 -4.9672 0.0033 12 7 1.1032 -5.6416 -1.0500 13 6 0.4719 -6.7357 -0.5681 14 6 -0.1518 -7.8184 -1.3703 15 6 -0.7679 -8.8977 -0.7337 16 6 -1.3300 -9.8856 -1.5291 17 6 -1.2464 -9.7408 -2.9057 18 7 -0.6447 -8.6864 -3.4241 19 7 -0.1220 -7.7680 -2.6959 20 7 0.5088 -6.6596 0.7365 21 8 1.0950 -5.6544 1.0789 22 1 -0.4850 0.8401 -0.0004 23 1 0.6241 -2.5575 -0.8881 24 1 0.6247 -2.5563 0.8919 25 1 2.8720 -3.6035 0.8926 26 1 2.8720 -3.6051 -0.8873 27 1 -0.8052 -8.9617 0.3437 28 1 -1.8184 -10.7423 -1.0890 29 1 -1.6739 -10.4913 -3.5541 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259744372.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:33 Heat of formation + Delta-G solvation = 119.388104 kcal Electronic energy + Delta-G solvation = -16255.634927 eV Core-core repulsion = 13375.758678 eV Total energy + Delta-G solvation = -2879.876250 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -45.31130 -41.16609 -35.88372 -34.76525 -33.55853 -33.00267 -32.00933 -30.21092 -26.00356 -25.86660 -24.84018 -23.26134 -22.21492 -20.76532 -18.15099 -17.85178 -17.34733 -16.92838 -16.35945 -16.06674 -15.17573 -14.55924 -14.28159 -13.98467 -13.57233 -13.23023 -12.47655 -12.24069 -11.98603 -11.56018 -11.38859 -11.00219 -10.89016 -10.75624 -10.59868 -10.42510 -10.15869 -9.95204 -9.84141 -9.34367 -9.21546 -8.45333 -6.09632 -4.14487 0.22150 0.48658 1.50994 2.47387 3.01153 3.20071 3.29677 3.36230 3.38659 3.41847 3.75100 4.14825 4.34707 4.39322 4.50238 4.53669 4.69810 5.20339 5.27167 5.36842 5.60116 5.74017 5.87946 5.97662 6.18453 6.25314 6.58312 7.47248 7.54809 7.85542 8.20483 8.30696 8.41651 8.90667 9.50552 11.01619 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.046072 B = 0.004108 C = 0.003952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.600599 B = 6814.839378 C = 7083.899944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.059 3.941 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.526 4.526 8 H 0.062 0.938 9 C 0.027 3.973 10 C -0.029 4.029 11 C 0.220 3.780 12 N -0.462 5.462 13 C 0.204 3.796 14 C 0.153 3.847 15 C -0.089 4.089 16 C -0.116 4.116 17 C 0.042 3.958 18 N -0.235 5.235 19 N -0.194 5.194 20 N -0.376 5.376 21 O 0.083 5.917 22 H 0.263 0.737 23 H 0.028 0.972 24 H 0.024 0.976 25 H 0.094 0.906 26 H 0.104 0.896 27 H 0.158 0.842 28 H 0.158 0.842 29 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.386 -18.714 0.014 18.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.143 4.143 3 Si 0.726 3.274 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.564 4.564 8 H 0.080 0.920 9 C -0.012 4.012 10 C -0.068 4.068 11 C 0.001 3.999 12 N -0.194 5.194 13 C -0.068 4.068 14 C 0.008 3.992 15 C -0.120 4.120 16 C -0.145 4.145 17 C -0.122 4.122 18 N -0.077 5.077 19 N -0.040 5.040 20 N -0.084 5.084 21 O 0.021 5.979 22 H 0.073 0.927 23 H 0.046 0.954 24 H 0.043 0.957 25 H 0.113 0.887 26 H 0.122 0.878 27 H 0.176 0.824 28 H 0.176 0.824 29 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -1.472 -18.464 -1.284 18.567 hybrid contribution -0.147 0.210 1.347 1.371 sum -1.618 -18.254 0.063 18.325 Atomic orbital electron populations 1.69967 1.06174 1.27002 1.49795 1.25019 0.94879 0.99487 0.94897 0.86495 0.79738 0.82970 0.78223 1.20523 1.21200 1.19685 1.21053 0.93182 0.90128 1.52034 0.91951 1.19184 0.93589 0.89788 0.98601 1.20854 0.98020 0.83224 1.04745 1.29794 0.94052 0.97047 0.78987 1.72193 1.15120 1.03874 1.28206 1.23007 1.01151 0.95182 0.87481 1.19563 0.96226 0.91466 0.91903 1.22372 0.94307 0.92342 1.02943 1.22392 0.98010 0.99574 0.94521 1.24517 0.95664 0.97382 0.94634 1.73257 1.05472 0.98877 1.30110 1.73398 1.10043 1.17626 1.02900 1.74774 1.15155 1.04404 1.14072 1.85277 1.51564 1.24663 1.36374 0.92731 0.95369 0.95740 0.88746 0.87815 0.82405 0.82424 0.80490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.13 13.29 55.43 0.74 -25.39 15 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 15 3 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 15 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 15 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 15 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 15 7 C -0.53 -13.95 9.11 -34.44 -0.31 -14.27 15 8 H 0.06 1.56 7.74 -52.48 -0.41 1.15 15 9 C 0.03 0.65 4.96 -27.88 -0.14 0.51 15 10 C -0.03 -0.55 5.78 -27.88 -0.16 -0.71 15 11 C 0.22 4.15 7.75 -12.99 -0.10 4.05 15 12 N -0.46 -9.26 11.57 -9.89 -0.11 -9.38 15 13 C 0.20 3.67 7.92 -156.13 -1.24 2.44 15 14 C 0.15 2.39 6.84 -82.75 -0.57 1.83 15 15 C -0.09 -0.98 9.84 -38.88 -0.38 -1.36 15 16 C -0.12 -0.90 10.20 -39.24 -0.40 -1.30 15 17 C 0.04 0.38 11.31 -17.32 -0.20 0.18 15 18 N -0.24 -3.32 11.50 30.58 0.35 -2.97 15 19 N -0.19 -3.30 11.46 33.37 0.38 -2.91 15 20 N -0.38 -6.51 11.90 30.96 0.37 -6.14 15 21 O 0.08 1.49 11.29 18.04 0.20 1.69 15 22 H 0.26 7.29 8.31 -40.82 -0.34 6.95 15 23 H 0.03 0.76 8.14 -51.93 -0.42 0.33 15 24 H 0.02 0.63 8.14 -51.93 -0.42 0.21 15 25 H 0.09 1.55 8.14 -51.93 -0.42 1.13 15 26 H 0.10 1.87 8.14 -51.93 -0.42 1.44 15 27 H 0.16 1.46 7.93 -52.49 -0.42 1.04 15 28 H 0.16 0.55 8.06 -52.49 -0.42 0.13 15 29 H 0.18 0.85 8.06 -52.49 -0.42 0.43 15 LS Contribution 273.70 15.07 4.12 4.12 Total: -1.00 -32.37 273.70 -5.05 -37.42 By element: Atomic # 1 Polarization: -2.71 SS G_CDS: -2.49 Total: -5.20 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: -3.59 Total: -7.10 kcal Atomic # 7 Polarization: -48.52 SS G_CDS: 1.72 Total: -46.80 kcal Atomic # 8 Polarization: 1.49 SS G_CDS: 0.20 Total: 1.69 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -32.37 -5.05 -37.42 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259744372.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.811 kcal (2) G-P(sol) polarization free energy of solvation -32.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds