Wall clock time and date at job start Mon Mar 30 2020 04:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 120.00210 * 2 1 4 4 H 1.48494 * 109.46878 * 269.99966 * 3 2 1 5 5 H 1.48508 * 109.46746 * 29.99803 * 3 2 1 6 6 H 1.48503 * 109.47310 * 149.99533 * 3 2 1 7 7 C 1.37881 * 120.00150 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99974 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99905 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47023 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.47019 * 180.02562 * 10 9 7 12 12 N 1.30967 * 126.44299 * 89.99759 * 11 10 9 13 13 C 1.35202 * 105.58160 * 179.97438 * 12 11 10 14 14 C 1.48476 * 126.41718 * 180.02562 * 13 12 11 15 15 C 1.39636 * 120.17921 * 179.72108 * 14 13 12 16 16 C 1.38722 * 117.89702 * 180.29466 * 15 14 13 17 17 C 1.38668 * 118.05889 * 359.96324 * 16 15 14 18 18 N 1.32007 * 120.05196 * 0.03419 * 17 16 15 19 19 N 1.28342 * 122.30243 * 359.97438 * 18 17 16 20 20 N 1.30734 * 107.17928 * 0.26215 * 13 12 11 21 21 O 1.21292 * 110.09759 * 359.54679 * 20 13 12 22 22 H 0.97001 * 119.99692 * 0.02562 * 1 2 3 23 23 H 1.09005 * 109.46923 * 60.00118 * 9 7 2 24 24 H 1.08995 * 109.47247 * 300.00456 * 9 7 2 25 25 H 1.08993 * 109.46964 * 60.00071 * 10 9 7 26 26 H 1.08998 * 109.46781 * 299.99844 * 10 9 7 27 27 H 1.07998 * 121.05217 * 0.25752 * 15 14 13 28 28 H 1.07993 * 120.96643 * 179.97438 * 16 15 14 29 29 H 1.08001 * 119.97458 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6621 0.0027 11 6 1.4919 -4.9672 0.0033 12 7 1.1032 -5.6416 -1.0500 13 6 0.4719 -6.7357 -0.5681 14 6 -0.1518 -7.8184 -1.3703 15 6 -0.7679 -8.8977 -0.7337 16 6 -1.3300 -9.8856 -1.5291 17 6 -1.2464 -9.7408 -2.9057 18 7 -0.6447 -8.6864 -3.4241 19 7 -0.1220 -7.7680 -2.6959 20 7 0.5088 -6.6596 0.7365 21 8 1.0950 -5.6544 1.0789 22 1 -0.4850 0.8401 -0.0004 23 1 0.6241 -2.5575 -0.8881 24 1 0.6247 -2.5563 0.8919 25 1 2.8720 -3.6035 0.8926 26 1 2.8720 -3.6051 -0.8873 27 1 -0.8052 -8.9617 0.3437 28 1 -1.8184 -10.7423 -1.0890 29 1 -1.6739 -10.4913 -3.5541 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259744372.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:33 Heat of formation + Delta-G solvation = 95.445876 kcal Electronic energy + Delta-G solvation = -16256.673140 eV Core-core repulsion = 13375.758678 eV Total energy + Delta-G solvation = -2880.914463 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -46.71764 -42.08095 -37.29707 -36.38866 -34.81760 -34.23032 -33.36807 -31.85329 -27.81347 -26.97745 -25.84418 -24.61328 -23.82254 -22.28353 -19.43240 -19.22211 -18.54115 -18.17176 -17.76320 -17.22132 -16.49669 -16.16319 -15.75444 -15.18137 -14.76063 -14.33770 -14.24044 -13.79740 -13.48237 -13.25040 -12.82524 -12.62649 -12.32047 -12.24734 -12.05897 -11.95419 -11.43148 -11.36960 -11.29756 -10.85477 -10.62148 -10.56197 -8.19782 -6.31674 -0.77780 -0.31941 0.14168 1.16826 1.46819 1.48133 1.58916 1.66503 1.93919 2.44007 2.46541 2.59412 3.15899 3.32475 3.45119 3.58929 3.68075 3.92117 4.11245 4.37065 4.43831 4.51957 4.67550 4.78405 4.83088 4.93698 5.13030 5.44058 5.52907 5.78200 6.13393 6.84207 6.89145 7.38484 7.48260 8.92748 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.046072 B = 0.004108 C = 0.003952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.600599 B = 6814.839378 C = 7083.899944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.002 4.002 3 Si 0.971 3.029 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.254 1.254 7 C -0.537 4.537 8 H 0.080 0.920 9 C 0.032 3.968 10 C -0.014 4.014 11 C 0.218 3.782 12 N -0.493 5.493 13 C 0.202 3.798 14 C 0.120 3.880 15 C -0.093 4.093 16 C -0.085 4.085 17 C 0.053 3.947 18 N -0.274 5.274 19 N -0.245 5.245 20 N -0.372 5.372 21 O 0.082 5.918 22 H 0.263 0.737 23 H -0.010 1.010 24 H 0.002 0.998 25 H 0.125 0.875 26 H 0.114 0.886 27 H 0.174 0.826 28 H 0.215 0.785 29 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.115 -20.652 0.415 20.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.200 4.200 3 Si 0.795 3.205 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.178 1.178 7 C -0.575 4.575 8 H 0.099 0.901 9 C -0.006 4.006 10 C -0.053 4.053 11 C -0.001 4.001 12 N -0.225 5.225 13 C -0.070 4.070 14 C -0.026 4.026 15 C -0.123 4.123 16 C -0.113 4.113 17 C -0.111 4.111 18 N -0.115 5.115 19 N -0.089 5.089 20 N -0.080 5.080 21 O 0.021 5.979 22 H 0.072 0.928 23 H 0.009 0.991 24 H 0.020 0.980 25 H 0.143 0.857 26 H 0.132 0.868 27 H 0.192 0.808 28 H 0.232 0.768 29 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -1.174 -20.405 -0.878 20.458 hybrid contribution -0.353 0.604 1.175 1.367 sum -1.527 -19.802 0.297 19.863 Atomic orbital electron populations 1.70122 1.08122 1.27920 1.51460 1.26030 0.95692 1.03703 0.94604 0.85353 0.78831 0.77966 0.78321 1.20179 1.21304 1.17786 1.21569 0.94246 0.90859 1.50777 0.90148 1.18970 0.94026 0.91940 0.95681 1.20618 0.96738 0.81161 1.06795 1.29637 0.94142 0.97128 0.79206 1.72178 1.16067 1.05121 1.29173 1.23541 1.00439 0.95212 0.87808 1.19695 0.98407 0.92530 0.91982 1.22655 0.93882 0.91680 1.04078 1.23026 0.95286 0.99494 0.93516 1.25353 0.93198 0.96242 0.96314 1.73132 1.07259 1.00373 1.30717 1.73260 1.12134 1.19762 1.03786 1.74725 1.15276 1.04225 1.13822 1.85255 1.51698 1.24862 1.36041 0.92806 0.99148 0.97986 0.85689 0.86781 0.80817 0.76787 0.75750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.45 13.29 21.45 0.28 -56.16 15 2 C 0.00 -0.13 5.46 84.66 0.46 0.33 15 3 Si 0.97 42.81 29.54 68.60 2.03 44.84 15 4 H -0.28 -11.95 7.11 99.48 0.71 -11.24 15 5 H -0.29 -12.60 7.11 99.48 0.71 -11.90 15 6 H -0.25 -10.39 7.11 99.48 0.71 -9.68 15 7 C -0.54 -28.59 9.11 25.60 0.23 -28.35 15 8 H 0.08 3.90 7.74 -2.91 -0.02 3.88 15 9 C 0.03 1.62 4.96 29.85 0.15 1.77 15 10 C -0.01 -0.55 5.78 29.85 0.17 -0.37 15 11 C 0.22 8.40 7.75 88.36 0.68 9.08 15 12 N -0.49 -20.47 11.57 -302.57 -3.50 -23.97 15 13 C 0.20 7.46 7.92 137.33 1.09 8.55 15 14 C 0.12 3.76 6.84 42.08 0.29 4.04 15 15 C -0.09 -1.86 9.84 22.72 0.22 -1.63 15 16 C -0.08 -0.95 10.20 22.49 0.23 -0.72 15 17 C 0.05 0.78 11.31 84.77 0.96 1.74 15 18 N -0.27 -7.54 11.50 -57.18 -0.66 -8.20 15 19 N -0.25 -8.50 11.46 -48.34 -0.55 -9.05 15 20 N -0.37 -12.98 11.90 -59.20 -0.70 -13.68 15 21 O 0.08 2.95 11.29 74.62 0.84 3.80 15 22 H 0.26 14.98 8.31 -92.71 -0.77 14.21 15 23 H -0.01 -0.57 8.14 -2.38 -0.02 -0.59 15 24 H 0.00 0.09 8.14 -2.39 -0.02 0.08 15 25 H 0.13 3.94 8.14 -2.39 -0.02 3.92 15 26 H 0.11 4.08 8.14 -2.39 -0.02 4.06 15 27 H 0.17 2.78 7.93 -2.91 -0.02 2.76 15 28 H 0.22 -0.01 8.06 -2.91 -0.02 -0.03 15 29 H 0.23 0.98 8.06 -2.91 -0.02 0.95 15 Total: -1.00 -74.98 273.70 3.40 -71.57 By element: Atomic # 1 Polarization: -4.77 SS G_CDS: 1.18 Total: -3.59 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: 4.49 Total: -5.56 kcal Atomic # 7 Polarization: -105.92 SS G_CDS: -5.13 Total: -111.05 kcal Atomic # 8 Polarization: 2.95 SS G_CDS: 0.84 Total: 3.80 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -74.98 3.40 -71.57 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259744372.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.016 kcal (2) G-P(sol) polarization free energy of solvation -74.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds