Wall clock time and date at job start Mon Mar 30 2020 04:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31013 * 1 3 3 Si 1.86807 * 119.99747 * 2 1 4 4 H 1.48503 * 109.46820 * 269.99692 * 3 2 1 5 5 H 1.48495 * 109.47098 * 30.00055 * 3 2 1 6 6 H 1.48506 * 109.46894 * 150.00184 * 3 2 1 7 7 C 1.39750 * 120.00106 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00299 * 163.16305 * 7 2 1 9 9 C 1.41132 * 120.00277 * 343.15988 * 7 2 1 10 10 C 1.41693 * 120.79099 * 335.50785 * 9 7 2 11 11 N 1.30979 * 120.08899 * 180.02562 * 10 9 7 12 12 C 1.34103 * 121.65856 * 359.96751 * 11 10 9 13 13 N 1.32793 * 131.95775 * 179.97438 * 12 11 10 14 14 C 1.32776 * 109.79028 * 180.02562 * 13 12 11 15 15 C 1.50700 * 125.19174 * 179.97438 * 14 13 12 16 16 C 1.53006 * 117.49866 * 60.02545 * 15 14 13 17 17 C 1.53004 * 60.03163 * 252.47492 * 16 15 14 18 18 N 1.31008 * 109.62516 * 0.24133 * 14 13 12 19 19 N 1.36668 * 120.93249 * 0.02900 * 12 11 10 20 20 C 1.36077 * 120.46464 * 359.97438 * 19 12 11 21 21 O 1.34824 * 120.78112 * 179.97438 * 20 19 12 22 22 H 0.97001 * 119.99930 * 359.97438 * 1 2 3 23 23 H 1.08005 * 119.95231 * 0.02562 * 10 9 7 24 24 H 1.08999 * 115.55298 * 205.69594 * 15 14 13 25 25 H 1.08997 * 117.49500 * 359.97438 * 16 15 14 26 26 H 1.08996 * 117.50211 * 144.97855 * 16 15 14 27 27 H 1.08998 * 117.49612 * 107.49584 * 17 16 15 28 28 H 1.08995 * 117.50138 * 252.52149 * 17 16 15 29 29 H 0.96696 * 116.99989 * 90.00188 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2441 1.6178 0.0000 4 1 2.4916 2.0464 -1.4001 5 1 1.4415 2.6527 0.7000 6 1 3.5417 1.4403 0.7000 7 6 2.0089 -1.2103 0.0005 8 1 3.0542 -1.2305 -0.2704 9 6 1.3487 -2.4062 0.3552 10 6 0.1973 -2.3818 1.1805 11 7 -0.4044 -3.5000 1.5016 12 6 0.0402 -4.6883 1.0671 13 7 -0.4000 -5.9260 1.2615 14 6 0.3806 -6.7868 0.6191 15 6 0.1971 -8.2825 0.6053 16 6 -1.1172 -8.8279 0.0429 17 6 -0.8522 -8.8755 1.5491 18 7 1.3380 -6.1380 0.0037 19 7 1.1457 -4.7755 0.2683 20 6 1.8187 -3.6527 -0.1032 21 8 2.9103 -3.7314 -0.8906 22 1 -0.4850 0.8401 0.0004 23 1 -0.1848 -1.4398 1.5455 24 1 1.1008 -8.8655 0.4277 25 1 -1.8492 -8.1048 -0.3167 26 1 -1.0780 -9.7694 -0.5049 27 1 -1.4099 -8.1836 2.1802 28 1 -0.6383 -9.8481 1.9920 29 1 2.7665 -3.6890 -1.8459 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259751364.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:07 Heat of formation + Delta-G solvation = 102.601016 kcal Electronic energy + Delta-G solvation = -17065.413214 eV Core-core repulsion = 14184.809022 eV Total energy + Delta-G solvation = -2880.604193 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.51498 -38.21777 -36.62308 -36.14605 -34.25438 -32.11888 -30.24899 -29.46575 -25.89545 -24.13331 -22.74180 -22.09997 -21.82268 -19.46766 -18.38921 -17.88053 -16.79968 -16.46327 -15.65407 -15.41336 -14.85871 -14.22597 -13.89075 -13.58574 -12.79675 -12.31665 -11.91560 -11.76296 -11.66373 -11.60900 -11.25171 -11.18080 -10.78244 -10.67204 -10.52930 -10.18500 -10.06933 -9.61266 -9.05209 -8.89317 -8.36296 -7.66890 -7.39848 -4.90380 1.62415 2.02195 2.75484 2.80245 2.86723 3.13141 3.31761 3.54003 4.03400 4.33980 4.39572 4.57293 4.88627 5.12847 5.18170 5.30287 5.53959 5.66277 5.84056 6.03245 6.25010 6.33738 6.38640 6.48336 6.61753 7.08111 7.16575 7.22092 7.44040 7.74522 7.90138 8.14192 8.44103 8.77828 9.14533 9.52097 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.052871 B = 0.005767 C = 0.005351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.459419 B = 4853.883424 C = 5231.666059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.069 3.931 3 Si 0.931 3.069 4 H -0.264 1.264 5 H -0.269 1.269 6 H -0.254 1.254 7 C -0.405 4.405 8 H 0.101 0.899 9 C 0.029 3.971 10 C 0.203 3.797 11 N -0.473 5.473 12 C 0.380 3.620 13 N -0.545 5.545 14 C 0.253 3.747 15 C -0.063 4.063 16 C -0.162 4.162 17 C -0.157 4.157 18 N -0.365 5.365 19 N -0.270 5.270 20 C 0.132 3.868 21 O -0.462 6.462 22 H 0.297 0.703 23 H 0.189 0.811 24 H 0.122 0.878 25 H 0.096 0.904 26 H 0.097 0.903 27 H 0.108 0.892 28 H 0.096 0.904 29 H 0.368 0.632 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.199 -2.453 -0.842 2.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.153 4.153 3 Si 0.753 3.247 4 H -0.189 1.189 5 H -0.194 1.194 6 H -0.178 1.178 7 C -0.435 4.435 8 H 0.119 0.881 9 C 0.019 3.981 10 C 0.016 3.984 11 N -0.188 5.188 12 C 0.024 3.976 13 N -0.281 5.281 14 C -0.027 4.027 15 C -0.084 4.084 16 C -0.201 4.201 17 C -0.194 4.194 18 N -0.204 5.204 19 N -0.055 5.055 20 C -0.029 4.029 21 O -0.264 6.264 22 H 0.109 0.891 23 H 0.205 0.795 24 H 0.140 0.860 25 H 0.114 0.886 26 H 0.116 0.884 27 H 0.127 0.873 28 H 0.114 0.886 29 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -0.204 -3.023 -0.046 3.031 hybrid contribution 0.893 1.056 -1.189 1.824 sum 0.689 -1.967 -1.235 2.423 Atomic orbital electron populations 1.69728 1.07811 1.31504 1.31518 1.26171 0.95074 1.02531 0.91494 0.85895 0.80484 0.78393 0.79904 1.18853 1.19369 1.17787 1.19433 0.98481 0.89031 1.36547 0.88070 1.18423 0.93729 0.90299 0.95641 1.24078 0.90632 0.94739 0.88960 1.67546 1.31382 0.95161 1.24678 1.22238 0.86405 0.93255 0.95658 1.70302 1.31262 0.95894 1.30680 1.22793 0.90500 0.95275 0.94130 1.19899 0.94815 0.86307 1.07400 1.22962 0.98065 1.02220 0.96840 1.22976 1.01612 1.01815 0.93047 1.78104 1.26068 0.84655 1.31556 1.48837 1.19358 1.05767 1.31556 1.18489 0.96398 0.82059 1.05989 1.84287 1.28011 1.94014 1.20099 0.89104 0.79481 0.86036 0.88568 0.88417 0.87343 0.88553 0.77554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -16.35 10.93 55.54 0.61 -15.74 15 2 C 0.07 1.39 5.18 -17.34 -0.09 1.30 15 3 Si 0.93 15.30 29.59 -169.99 -5.03 10.27 15 4 H -0.26 -4.34 7.11 56.52 0.40 -3.94 15 5 H -0.27 -4.31 7.11 56.52 0.40 -3.91 15 6 H -0.25 -4.23 7.11 56.52 0.40 -3.83 15 7 C -0.41 -9.00 8.76 -37.92 -0.33 -9.33 15 8 H 0.10 2.19 7.69 -52.49 -0.40 1.79 15 9 C 0.03 0.69 5.60 -106.48 -0.60 0.09 15 10 C 0.20 4.80 9.93 -16.60 -0.16 4.64 15 11 N -0.47 -11.96 10.42 -13.40 -0.14 -12.10 15 12 C 0.38 9.99 8.98 -322.80 -2.90 7.09 15 13 N -0.55 -13.62 10.78 -11.74 -0.13 -13.75 15 14 C 0.25 5.79 7.64 -157.01 -1.20 4.59 15 15 C -0.06 -1.09 6.33 -91.73 -0.58 -1.67 15 16 C -0.16 -2.31 10.23 -26.73 -0.27 -2.58 15 17 C -0.16 -2.25 10.14 -26.69 -0.27 -2.52 15 18 N -0.37 -9.10 12.77 32.39 0.41 -8.69 15 19 N -0.27 -7.01 3.90 -13.01 -0.05 -7.06 15 20 C 0.13 3.28 8.03 -14.67 -0.12 3.16 15 21 O -0.46 -10.29 12.79 -16.21 -0.21 -10.50 15 22 H 0.30 5.54 8.30 -40.82 -0.34 5.20 15 23 H 0.19 4.14 6.18 -52.48 -0.32 3.81 15 24 H 0.12 1.84 8.14 -51.93 -0.42 1.41 15 25 H 0.10 1.51 8.14 -51.93 -0.42 1.09 15 26 H 0.10 1.09 8.14 -51.93 -0.42 0.67 15 27 H 0.11 1.76 7.86 -51.93 -0.41 1.35 15 28 H 0.10 1.08 8.14 -51.93 -0.42 0.66 15 29 H 0.37 6.58 9.15 45.56 0.42 7.00 15 LS Contribution 265.08 15.07 3.99 3.99 Total: -1.00 -28.88 265.08 -8.61 -37.49 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -1.54 Total: 11.30 kcal Atomic # 6 Polarization: 11.29 SS G_CDS: -6.52 Total: 4.77 kcal Atomic # 7 Polarization: -58.04 SS G_CDS: 0.70 Total: -57.34 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: -0.21 Total: -10.50 kcal Atomic # 14 Polarization: 15.30 SS G_CDS: -5.03 Total: 10.27 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -28.88 -8.61 -37.49 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259751364.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.092 kcal (2) G-P(sol) polarization free energy of solvation -28.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds