Wall clock time and date at job start Mon Mar 30 2020 03:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31354 * 1 3 3 Si 1.86799 * 120.00113 * 2 1 4 4 H 1.48491 * 109.47328 * 240.00206 * 3 2 1 5 5 H 1.48504 * 109.46829 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47252 * 119.99848 * 3 2 1 7 7 C 1.39065 * 120.00440 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99984 * 179.97438 * 7 2 1 9 9 N 1.36813 * 119.99735 * 0.02562 * 7 2 1 10 10 C 1.34775 * 120.00067 * 180.02562 * 9 7 2 11 11 O 1.21691 * 119.99796 * 359.97438 * 10 9 7 12 12 C 1.46910 * 120.00050 * 179.97438 * 10 9 7 13 13 C 1.36023 * 125.44845 * 179.97438 * 12 10 9 14 14 C 1.41541 * 107.74482 * 180.02562 * 13 12 10 15 15 C 1.40256 * 133.33117 * 180.02562 * 14 13 12 16 16 C 1.36406 * 119.92567 * 179.97438 * 15 14 13 17 17 C 1.38919 * 120.66667 * 0.03144 * 16 15 14 18 18 C 1.38118 * 120.58825 * 359.95598 * 17 16 15 19 19 O 1.35957 * 120.14438 * 180.30538 * 18 17 16 20 20 C 1.39655 * 119.71309 * 0.02698 * 18 17 16 21 21 N 1.37662 * 133.16159 * 180.02562 * 20 18 17 22 22 H 0.97000 * 125.61984 * 359.95317 * 21 20 18 23 23 H 0.97001 * 120.00507 * 359.97438 * 1 2 3 24 24 H 0.97004 * 120.00154 * 359.97438 * 9 7 2 25 25 H 1.07996 * 126.12789 * 0.02562 * 13 12 10 26 26 H 1.07995 * 120.03487 * 359.93677 * 15 14 13 27 27 H 1.08001 * 119.66263 * 179.97438 * 16 15 14 28 28 H 1.08002 * 119.70427 * 179.97438 * 17 16 15 29 29 H 0.96704 * 113.99617 * 269.71987 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2476 1.6177 0.0000 4 1 3.1012 1.6964 -1.2124 5 1 1.2825 2.7464 0.0006 6 1 3.1013 1.6964 1.2125 7 6 2.0090 -1.2043 -0.0005 8 1 3.0889 -1.2042 -0.0010 9 7 1.3249 -2.3891 -0.0016 10 6 1.9988 -3.5563 -0.0016 11 8 3.2157 -3.5563 -0.0011 12 6 1.2643 -4.8286 -0.0022 13 6 1.8295 -6.0658 -0.0027 14 6 0.7826 -7.0184 -0.0037 15 6 0.7573 -8.4207 -0.0042 16 6 -0.4369 -9.0798 -0.0047 17 6 -1.6346 -8.3760 -0.0055 18 6 -1.6382 -6.9948 -0.0048 19 8 -2.8156 -6.3151 0.0007 20 6 -0.4270 -6.2995 -0.0039 21 7 -0.1103 -4.9598 -0.0027 22 1 -0.7477 -4.2286 -0.0028 23 1 -0.4851 0.8400 0.0004 24 1 0.3549 -2.3892 -0.0016 25 1 2.8875 -6.2825 -0.0024 26 1 1.6824 -8.9780 -0.0047 27 1 -0.4515 -10.1597 -0.0055 28 1 -2.5713 -8.9136 -0.0063 29 1 -3.1580 -6.1143 -0.8811 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259758274.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:17 Heat of formation + Delta-G solvation = -51.127822 kcal Electronic energy + Delta-G solvation = -16703.016684 eV Core-core repulsion = 13783.453558 eV Total energy + Delta-G solvation = -2919.563126 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.56311 -40.14732 -38.77685 -36.97775 -36.24904 -33.52923 -32.30453 -30.45810 -29.53637 -27.39609 -24.52902 -23.14971 -22.27748 -20.99246 -20.37909 -19.52909 -18.28958 -18.09257 -16.83832 -16.54669 -16.15304 -15.95617 -15.82468 -15.31005 -15.04364 -14.65767 -14.55359 -13.86126 -13.63461 -13.12041 -13.01740 -12.58305 -12.47909 -12.28284 -12.16569 -11.69566 -11.68424 -10.82953 -10.69525 -10.24904 -9.26536 -8.66588 -8.64439 -6.10353 -0.21872 0.62330 1.06648 1.38966 1.45972 1.50425 1.93020 2.20804 2.35387 2.83828 2.90932 3.14730 3.27605 3.80609 4.06462 4.13717 4.23742 4.50575 4.52027 4.80673 4.95838 5.04987 5.26879 5.42805 5.50621 5.61977 5.69170 5.83457 6.04765 6.31837 6.40514 6.82930 6.90435 7.26538 7.79840 8.52283 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.039559 B = 0.005372 C = 0.004740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.636533 B = 5210.885735 C = 5906.170654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.007 4.007 3 Si 1.002 2.998 4 H -0.267 1.267 5 H -0.267 1.267 6 H -0.268 1.268 7 C -0.342 4.342 8 H 0.090 0.910 9 N -0.548 5.548 10 C 0.487 3.513 11 O -0.619 6.619 12 C 0.034 3.966 13 C -0.143 4.143 14 C -0.118 4.118 15 C -0.078 4.078 16 C -0.127 4.127 17 C -0.115 4.115 18 C 0.080 3.920 19 O -0.506 6.506 20 C 0.062 3.938 21 N -0.570 5.570 22 H 0.422 0.578 23 H 0.285 0.715 24 H 0.394 0.606 25 H 0.153 0.847 26 H 0.148 0.852 27 H 0.164 0.836 28 H 0.160 0.840 29 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.823 -14.230 -1.745 15.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.209 4.209 3 Si 0.824 3.176 4 H -0.192 1.192 5 H -0.191 1.191 6 H -0.193 1.193 7 C -0.471 4.471 8 H 0.108 0.892 9 N -0.181 5.181 10 C 0.275 3.725 11 O -0.506 6.506 12 C -0.077 4.077 13 C -0.170 4.170 14 C -0.122 4.122 15 C -0.097 4.097 16 C -0.146 4.146 17 C -0.134 4.134 18 C 0.033 3.967 19 O -0.318 6.318 20 C -0.048 4.048 21 N -0.174 5.174 22 H 0.261 0.739 23 H 0.094 0.906 24 H 0.228 0.772 25 H 0.171 0.829 26 H 0.166 0.834 27 H 0.182 0.818 28 H 0.177 0.823 29 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -6.192 -13.888 -1.142 15.249 hybrid contribution -0.425 1.629 -0.475 1.749 sum -6.616 -12.259 -1.617 14.024 Atomic orbital electron populations 1.69614 1.07129 1.30273 1.47801 1.26241 0.96634 1.02865 0.95114 0.84855 0.77796 0.75600 0.79345 1.19219 1.19122 1.19335 1.19806 0.93340 0.83389 1.50551 0.89229 1.41807 1.09197 1.04856 1.62273 1.17301 0.87038 0.82803 0.85346 1.90622 1.14051 1.86989 1.58966 1.20334 0.82667 0.95203 1.09493 1.20931 0.99594 0.89362 1.07159 1.18368 0.90972 0.94849 1.08050 1.20747 1.00284 0.90247 0.98388 1.20893 0.90449 1.01529 1.01701 1.21450 1.00659 0.90924 1.00388 1.17689 0.81600 0.90441 1.06997 1.84844 1.35280 1.76485 1.35210 1.19202 0.96215 0.83236 1.06184 1.41972 1.05472 1.06731 1.63262 0.73922 0.90567 0.77209 0.82914 0.83422 0.81809 0.82283 0.73908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.71 13.05 21.68 0.28 -47.43 15 2 C -0.01 -0.35 5.50 84.96 0.47 0.12 15 3 Si 1.00 41.57 29.55 68.60 2.03 43.60 15 4 H -0.27 -10.92 7.11 99.48 0.71 -10.21 15 5 H -0.27 -10.34 7.11 99.48 0.71 -9.64 15 6 H -0.27 -11.01 7.11 99.48 0.71 -10.31 15 7 C -0.34 -19.33 9.68 84.11 0.81 -18.52 15 8 H 0.09 5.33 7.15 -2.91 -0.02 5.31 15 9 N -0.55 -28.94 5.27 -310.45 -1.64 -30.58 15 10 C 0.49 25.22 7.74 86.51 0.67 25.89 15 11 O -0.62 -36.10 16.41 -4.32 -0.07 -36.17 15 12 C 0.03 1.44 6.96 39.91 0.28 1.72 15 13 C -0.14 -5.45 10.54 22.57 0.24 -5.21 15 14 C -0.12 -3.77 6.16 -21.37 -0.13 -3.91 15 15 C -0.08 -1.83 10.06 22.33 0.22 -1.61 15 16 C -0.13 -2.34 9.96 22.01 0.22 -2.12 15 17 C -0.11 -2.30 9.96 22.40 0.22 -2.07 15 18 C 0.08 2.08 6.72 22.58 0.15 2.23 15 19 O -0.51 -11.86 13.51 -93.06 -1.26 -13.12 15 20 C 0.06 2.01 7.20 39.18 0.28 2.29 15 21 N -0.57 -20.62 6.08 -176.90 -1.08 -21.69 15 22 H 0.42 14.31 8.12 -92.71 -0.75 13.56 15 23 H 0.28 13.86 8.31 -92.71 -0.77 13.09 15 24 H 0.39 19.54 6.95 -92.71 -0.64 18.90 15 25 H 0.15 5.59 8.06 -2.91 -0.02 5.57 15 26 H 0.15 2.70 8.06 -2.91 -0.02 2.68 15 27 H 0.16 1.76 8.06 -2.91 -0.02 1.74 15 28 H 0.16 2.22 8.06 -2.91 -0.02 2.19 15 29 H 0.40 5.73 9.06 -74.05 -0.67 5.06 15 Total: -1.00 -69.51 267.49 0.87 -68.64 By element: Atomic # 1 Polarization: 38.78 SS G_CDS: -0.83 Total: 37.95 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: 3.44 Total: -1.18 kcal Atomic # 7 Polarization: -97.27 SS G_CDS: -2.43 Total: -99.70 kcal Atomic # 8 Polarization: -47.97 SS G_CDS: -1.33 Total: -49.29 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.60 kcal Total: -69.51 0.87 -68.64 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259758274.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.508 kcal (2) G-P(sol) polarization free energy of solvation -69.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds