Wall clock time and date at job start Mon Mar 30 2020 03:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31035 * 1 3 3 Si 1.86799 * 119.99959 * 2 1 4 4 H 1.48504 * 109.47339 * 270.00330 * 3 2 1 5 5 H 1.48493 * 109.47288 * 30.00542 * 3 2 1 6 6 H 1.48500 * 109.47298 * 150.00624 * 3 2 1 7 7 C 1.39728 * 120.00377 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00671 * 189.35789 * 7 2 1 9 9 C 1.41388 * 119.99284 * 9.35761 * 7 2 1 10 10 C 1.39349 * 126.94376 * 10.84467 * 9 7 2 11 11 N 1.34472 * 107.50533 * 180.14697 * 10 9 7 12 12 C 1.40053 * 125.13443 * 179.87963 * 11 10 9 13 13 C 1.38801 * 120.09404 * 359.72456 * 12 11 10 14 14 C 1.38149 * 119.98082 * 179.97438 * 13 12 11 15 15 C 1.38322 * 120.17453 * 0.02562 * 14 13 12 16 16 C 1.38222 * 120.19659 * 359.97438 * 15 14 13 17 17 C 1.38577 * 120.01444 * 0.02562 * 16 15 14 18 18 O 1.35934 * 120.09014 * 179.97438 * 17 16 15 19 19 N 1.39711 * 109.73452 * 359.61579 * 11 10 9 20 20 C 1.30771 * 109.50222 * 0.24021 * 19 11 10 21 21 O 1.35826 * 126.43468 * 180.02562 * 20 19 11 22 22 H 0.97000 * 119.99599 * 359.97438 * 1 2 3 23 23 H 1.07999 * 126.24049 * 0.03003 * 10 9 7 24 24 H 1.07991 * 120.01023 * 359.97438 * 13 12 11 25 25 H 1.07994 * 119.91343 * 179.97438 * 14 13 12 26 26 H 1.08006 * 119.90018 * 179.70173 * 15 14 13 27 27 H 1.07997 * 119.98970 * 179.97438 * 16 15 14 28 28 H 0.96700 * 113.99845 * 270.04727 * 18 17 16 29 29 H 0.96701 * 113.99903 * 89.97922 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3103 0.0000 0.0000 3 14 2.2443 1.6177 0.0000 4 1 2.4918 2.0465 -1.4001 5 1 1.4419 2.6526 0.7001 6 1 3.5420 1.4402 0.6999 7 6 2.0091 -1.2100 -0.0005 8 1 3.0782 -1.2164 0.1515 9 6 1.3162 -2.4262 -0.2002 10 6 -0.0057 -2.5788 -0.6139 11 7 -0.2619 -3.8977 -0.6711 12 6 -1.4866 -4.4654 -1.0442 13 6 -2.5562 -3.6498 -1.3868 14 6 -3.7631 -4.2123 -1.7551 15 6 -3.9095 -5.5875 -1.7830 16 6 -2.8492 -6.4065 -1.4432 17 6 -1.6350 -5.8508 -1.0727 18 8 -0.5914 -6.6549 -0.7377 19 7 0.8799 -4.6163 -0.3079 20 6 1.8460 -3.7838 -0.0188 21 8 3.1036 -4.1128 0.3749 22 1 -0.4849 0.8401 0.0004 23 1 -0.6985 -1.7831 -0.8444 24 1 -2.4450 -2.5758 -1.3655 25 1 -4.5946 -3.5767 -2.0210 26 1 -4.8564 -6.0224 -2.0669 27 1 -2.9673 -7.4798 -1.4658 28 1 -0.5522 -6.8773 0.2025 29 1 3.7291 -4.2188 -0.3549 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259762976.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:05 Heat of formation + Delta-G solvation = 23.104647 kcal Electronic energy + Delta-G solvation = -17125.030917 eV Core-core repulsion = 14208.686752 eV Total energy + Delta-G solvation = -2916.344165 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.13172 -38.63745 -36.24311 -36.03165 -33.70106 -31.94539 -29.64409 -28.94505 -27.81032 -25.16137 -22.35087 -22.17243 -19.96402 -19.76583 -17.95466 -17.22823 -16.63213 -16.31605 -15.24688 -14.97996 -14.58967 -14.28608 -14.12337 -13.42516 -13.13803 -12.80613 -12.47548 -11.88500 -11.68579 -11.61614 -11.33520 -11.26203 -10.86805 -10.57692 -10.04492 -9.93795 -9.57561 -9.07410 -8.79201 -8.43742 -7.68914 -7.07171 -6.65417 -4.17143 1.45828 1.60137 3.00209 3.11876 3.12253 3.16095 3.40435 3.89302 4.01533 4.18571 4.70734 4.96128 5.19083 5.25757 5.31434 5.60205 5.77327 5.89845 6.19287 6.34201 6.60189 6.61961 6.79268 7.04384 7.08086 7.23885 7.26083 7.54529 8.07018 8.21268 8.50620 8.61381 8.79707 8.92465 9.06841 10.36178 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.028036 B = 0.007241 C = 0.005793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.485096 B = 3866.001423 C = 4832.189121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.060 3.940 3 Si 0.918 3.082 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.418 4.418 8 H 0.077 0.923 9 C -0.026 4.026 10 C -0.088 4.088 11 N -0.314 5.314 12 C 0.181 3.819 13 C -0.148 4.148 14 C -0.096 4.096 15 C -0.153 4.153 16 C -0.121 4.121 17 C 0.070 3.930 18 O -0.473 6.473 19 N -0.304 5.304 20 C 0.206 3.794 21 O -0.459 6.459 22 H 0.276 0.724 23 H 0.189 0.811 24 H 0.136 0.864 25 H 0.125 0.875 26 H 0.120 0.880 27 H 0.125 0.875 28 H 0.379 0.621 29 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.346 -5.261 -2.629 7.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.152 4.152 3 Si 0.744 3.256 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.451 4.451 8 H 0.095 0.905 9 C -0.035 4.035 10 C -0.223 4.223 11 N -0.096 5.096 12 C 0.082 3.918 13 C -0.170 4.170 14 C -0.115 4.115 15 C -0.173 4.173 16 C -0.140 4.140 17 C 0.021 3.979 18 O -0.281 6.281 19 N -0.134 5.134 20 C -0.004 4.004 21 O -0.261 6.261 22 H 0.087 0.913 23 H 0.205 0.795 24 H 0.153 0.847 25 H 0.143 0.857 26 H 0.138 0.862 27 H 0.143 0.857 28 H 0.234 0.766 29 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -5.768 -6.127 -2.667 8.827 hybrid contribution 0.788 1.598 0.163 1.789 sum -4.980 -4.529 -2.504 7.182 Atomic orbital electron populations 1.69635 1.07281 1.28476 1.40138 1.25682 0.94894 1.00856 0.93781 0.86135 0.80058 0.80543 0.78890 1.19734 1.20523 1.18918 1.18770 0.95056 0.88927 1.42321 0.90451 1.19296 0.92282 0.90986 1.00965 1.23095 1.00101 0.83141 1.15969 1.44352 1.06396 1.05044 1.53805 1.18100 0.84069 0.91882 0.97756 1.20800 0.91873 1.00365 1.03919 1.20862 0.96511 0.94893 0.99252 1.20813 0.98520 0.93459 1.04481 1.21182 0.91604 1.00018 1.01198 1.18070 0.88205 0.87038 1.04545 1.84884 1.46362 1.67116 1.29774 1.76661 0.93750 1.19987 1.22970 1.21836 0.85926 0.91399 1.01283 1.84785 1.15330 1.91800 1.34147 0.91303 0.79465 0.84664 0.85728 0.86162 0.85678 0.76555 0.76521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -21.19 10.68 55.54 0.59 -20.60 15 2 C 0.06 1.51 5.45 -17.34 -0.09 1.42 15 3 Si 0.92 19.08 29.57 -169.99 -5.03 14.06 15 4 H -0.27 -5.57 7.11 56.52 0.40 -5.17 15 5 H -0.28 -5.72 7.11 56.52 0.40 -5.32 15 6 H -0.26 -5.46 7.11 56.52 0.40 -5.06 15 7 C -0.42 -11.19 9.43 -37.83 -0.36 -11.55 15 8 H 0.08 1.99 7.86 -52.49 -0.41 1.58 15 9 C -0.03 -0.70 6.05 -104.80 -0.63 -1.33 15 10 C -0.09 -2.29 9.66 -15.98 -0.15 -2.45 15 11 N -0.31 -7.62 3.74 -9.82 -0.04 -7.66 15 12 C 0.18 3.77 6.69 -83.47 -0.56 3.21 15 13 C -0.15 -2.67 9.43 -39.41 -0.37 -3.04 15 14 C -0.10 -1.40 10.04 -39.58 -0.40 -1.79 15 15 C -0.15 -2.07 10.04 -39.56 -0.40 -2.47 15 16 C -0.12 -1.82 9.98 -39.46 -0.39 -2.21 15 17 C 0.07 1.30 6.72 -39.04 -0.26 1.03 15 18 O -0.47 -8.84 11.49 -19.53 -0.22 -9.07 15 19 N -0.30 -7.52 10.40 31.95 0.33 -7.19 15 20 C 0.21 5.18 8.73 -14.52 -0.13 5.05 15 21 O -0.46 -9.97 13.66 -19.19 -0.26 -10.23 15 22 H 0.28 6.49 8.30 -40.82 -0.34 6.15 15 23 H 0.19 4.87 5.05 -52.49 -0.27 4.60 15 24 H 0.14 2.48 6.65 -52.49 -0.35 2.13 15 25 H 0.12 1.43 8.06 -52.49 -0.42 1.01 15 26 H 0.12 1.25 8.06 -52.48 -0.42 0.82 15 27 H 0.13 1.56 8.06 -52.49 -0.42 1.14 15 28 H 0.38 5.88 9.06 45.56 0.41 6.29 15 29 H 0.38 6.18 9.06 45.56 0.41 6.59 15 LS Contribution 263.22 15.07 3.97 3.97 Total: -1.00 -31.07 263.22 -5.01 -36.07 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -0.60 Total: 14.78 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: -3.75 Total: -14.13 kcal Atomic # 7 Polarization: -36.34 SS G_CDS: 0.89 Total: -35.45 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: -0.49 Total: -19.29 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.03 Total: 14.06 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -31.07 -5.01 -36.07 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259762976.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.178 kcal (2) G-P(sol) polarization free energy of solvation -31.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds