Wall clock time and date at job start Mon Mar 30 2020 03:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31035 * 1 3 3 Si 1.86799 * 119.99959 * 2 1 4 4 H 1.48504 * 109.47339 * 270.00330 * 3 2 1 5 5 H 1.48493 * 109.47288 * 30.00542 * 3 2 1 6 6 H 1.48500 * 109.47298 * 150.00624 * 3 2 1 7 7 C 1.39728 * 120.00377 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00671 * 189.35789 * 7 2 1 9 9 C 1.41388 * 119.99284 * 9.35761 * 7 2 1 10 10 C 1.39349 * 126.94376 * 10.84467 * 9 7 2 11 11 N 1.34472 * 107.50533 * 180.14697 * 10 9 7 12 12 C 1.40053 * 125.13443 * 179.87963 * 11 10 9 13 13 C 1.38801 * 120.09404 * 359.72456 * 12 11 10 14 14 C 1.38149 * 119.98082 * 179.97438 * 13 12 11 15 15 C 1.38322 * 120.17453 * 0.02562 * 14 13 12 16 16 C 1.38222 * 120.19659 * 359.97438 * 15 14 13 17 17 C 1.38577 * 120.01444 * 0.02562 * 16 15 14 18 18 O 1.35934 * 120.09014 * 179.97438 * 17 16 15 19 19 N 1.39711 * 109.73452 * 359.61579 * 11 10 9 20 20 C 1.30771 * 109.50222 * 0.24021 * 19 11 10 21 21 O 1.35826 * 126.43468 * 180.02562 * 20 19 11 22 22 H 0.97000 * 119.99599 * 359.97438 * 1 2 3 23 23 H 1.07999 * 126.24049 * 0.03003 * 10 9 7 24 24 H 1.07991 * 120.01023 * 359.97438 * 13 12 11 25 25 H 1.07994 * 119.91343 * 179.97438 * 14 13 12 26 26 H 1.08006 * 119.90018 * 179.70173 * 15 14 13 27 27 H 1.07997 * 119.98970 * 179.97438 * 16 15 14 28 28 H 0.96700 * 113.99845 * 270.04727 * 18 17 16 29 29 H 0.96701 * 113.99903 * 89.97922 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3103 0.0000 0.0000 3 14 2.2443 1.6177 0.0000 4 1 2.4918 2.0465 -1.4001 5 1 1.4419 2.6526 0.7001 6 1 3.5420 1.4402 0.6999 7 6 2.0091 -1.2100 -0.0005 8 1 3.0782 -1.2164 0.1515 9 6 1.3162 -2.4262 -0.2002 10 6 -0.0057 -2.5788 -0.6139 11 7 -0.2619 -3.8977 -0.6711 12 6 -1.4866 -4.4654 -1.0442 13 6 -2.5562 -3.6498 -1.3868 14 6 -3.7631 -4.2123 -1.7551 15 6 -3.9095 -5.5875 -1.7830 16 6 -2.8492 -6.4065 -1.4432 17 6 -1.6350 -5.8508 -1.0727 18 8 -0.5914 -6.6549 -0.7377 19 7 0.8799 -4.6163 -0.3079 20 6 1.8460 -3.7838 -0.0188 21 8 3.1036 -4.1128 0.3749 22 1 -0.4849 0.8401 0.0004 23 1 -0.6985 -1.7831 -0.8444 24 1 -2.4450 -2.5758 -1.3655 25 1 -4.5946 -3.5767 -2.0210 26 1 -4.8564 -6.0224 -2.0669 27 1 -2.9673 -7.4798 -1.4658 28 1 -0.5522 -6.8773 0.2025 29 1 3.7291 -4.2188 -0.3549 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259762976.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:05 Heat of formation + Delta-G solvation = -1.798979 kcal Electronic energy + Delta-G solvation = -17126.110819 eV Core-core repulsion = 14208.686752 eV Total energy + Delta-G solvation = -2917.424067 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.80978 -40.15416 -37.93145 -37.43157 -35.57857 -33.50757 -31.13620 -30.69371 -29.41742 -26.97697 -23.88949 -23.60830 -21.65940 -21.50430 -19.52658 -18.91766 -18.38787 -17.94020 -16.74649 -16.53369 -16.20204 -15.88834 -15.49973 -14.86155 -14.81844 -14.53064 -14.25360 -13.47877 -13.18162 -13.05035 -12.90692 -12.80473 -12.45272 -12.25597 -11.86569 -11.40901 -11.33337 -10.72537 -10.63286 -9.74445 -9.54239 -8.78243 -8.51990 -6.14140 0.02583 0.31393 1.33309 1.42498 1.44163 1.55474 1.72469 2.06314 2.28568 2.78535 3.23649 3.37468 3.38395 3.83177 4.13709 4.34280 4.41498 4.50594 4.75585 4.96414 5.06801 5.27164 5.33881 5.42989 5.49201 5.54660 5.63807 5.88979 6.26727 6.64670 6.76082 6.92715 6.93849 7.02454 7.17942 8.51076 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.028036 B = 0.007241 C = 0.005793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.485096 B = 3866.001423 C = 4832.189121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.019 3.981 3 Si 0.992 3.008 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.263 1.263 7 C -0.456 4.456 8 H 0.075 0.925 9 C -0.063 4.063 10 C -0.089 4.089 11 N -0.318 5.318 12 C 0.125 3.875 13 C -0.156 4.156 14 C -0.090 4.090 15 C -0.124 4.124 16 C -0.116 4.116 17 C 0.058 3.942 18 O -0.489 6.489 19 N -0.307 5.307 20 C 0.184 3.816 21 O -0.460 6.460 22 H 0.284 0.716 23 H 0.183 0.817 24 H 0.121 0.879 25 H 0.163 0.837 26 H 0.170 0.830 27 H 0.157 0.843 28 H 0.390 0.610 29 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.482 -5.867 -3.457 10.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.190 4.190 3 Si 0.813 3.187 4 H -0.189 1.189 5 H -0.196 1.196 6 H -0.187 1.187 7 C -0.489 4.489 8 H 0.093 0.907 9 C -0.073 4.073 10 C -0.225 4.225 11 N -0.102 5.102 12 C 0.029 3.971 13 C -0.178 4.178 14 C -0.108 4.108 15 C -0.143 4.143 16 C -0.135 4.135 17 C 0.010 3.990 18 O -0.298 6.298 19 N -0.138 5.138 20 C -0.026 4.026 21 O -0.265 6.265 22 H 0.094 0.906 23 H 0.199 0.801 24 H 0.139 0.861 25 H 0.180 0.820 26 H 0.187 0.813 27 H 0.175 0.825 28 H 0.246 0.754 29 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -7.939 -6.786 -3.513 11.019 hybrid contribution 1.179 1.592 0.341 2.010 sum -6.760 -5.194 -3.172 9.096 Atomic orbital electron populations 1.69692 1.08516 1.29713 1.40451 1.26558 0.95772 1.03943 0.92721 0.85039 0.78592 0.75905 0.79133 1.18939 1.19574 1.18718 1.18998 0.95204 0.89991 1.44710 0.90721 1.19696 0.93220 0.92137 1.02227 1.23037 0.99886 0.84140 1.15464 1.44551 1.07331 1.04404 1.53889 1.18724 0.83665 0.93541 1.01143 1.20969 0.92821 0.99750 1.04271 1.21322 0.95781 0.96204 0.97508 1.21424 0.99689 0.92717 1.00497 1.21573 0.90237 1.01955 0.99723 1.18459 0.89452 0.86230 1.04842 1.84832 1.47196 1.66987 1.30810 1.76546 0.93986 1.20143 1.23077 1.21862 0.87087 0.90951 1.02691 1.84715 1.14701 1.91543 1.35497 0.90599 0.80090 0.86092 0.81984 0.81282 0.82497 0.75376 0.74085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -45.06 10.68 21.80 0.23 -44.83 15 2 C 0.02 1.00 5.45 85.17 0.46 1.46 15 3 Si 0.99 39.62 29.57 68.60 2.03 41.65 15 4 H -0.26 -10.17 7.11 99.48 0.71 -9.46 15 5 H -0.27 -10.32 7.11 99.48 0.71 -9.62 15 6 H -0.26 -10.32 7.11 99.48 0.71 -9.62 15 7 C -0.46 -25.47 9.43 23.41 0.22 -25.25 15 8 H 0.07 4.02 7.86 -2.91 -0.02 4.00 15 9 C -0.06 -3.58 6.05 -19.98 -0.12 -3.70 15 10 C -0.09 -4.86 9.66 84.56 0.82 -4.04 15 11 N -0.32 -16.03 3.74 -184.98 -0.69 -16.72 15 12 C 0.12 5.26 6.69 38.23 0.26 5.51 15 13 C -0.16 -5.58 9.43 22.38 0.21 -5.37 15 14 C -0.09 -2.27 10.04 22.27 0.22 -2.04 15 15 C -0.12 -2.70 10.04 22.29 0.22 -2.48 15 16 C -0.12 -3.04 9.98 22.35 0.22 -2.82 15 17 C 0.06 2.09 6.72 22.62 0.15 2.24 15 18 O -0.49 -18.11 11.49 -92.80 -1.07 -19.18 15 19 N -0.31 -15.71 10.40 -166.36 -1.73 -17.44 15 20 C 0.18 9.64 8.73 87.11 0.76 10.40 15 21 O -0.46 -20.65 13.66 -91.59 -1.25 -21.90 15 22 H 0.28 13.55 8.30 -92.71 -0.77 12.79 15 23 H 0.18 9.95 5.05 -2.91 -0.01 9.93 15 24 H 0.12 4.58 6.65 -2.92 -0.02 4.56 15 25 H 0.16 2.90 8.06 -2.91 -0.02 2.87 15 26 H 0.17 2.18 8.06 -2.91 -0.02 2.16 15 27 H 0.16 3.13 8.06 -2.91 -0.02 3.11 15 28 H 0.39 12.12 9.06 -74.06 -0.67 11.45 15 29 H 0.40 13.46 9.06 -74.06 -0.67 12.79 15 Total: -1.00 -70.40 263.22 0.83 -69.56 By element: Atomic # 1 Polarization: 35.07 SS G_CDS: -0.12 Total: 34.95 kcal Atomic # 6 Polarization: -29.52 SS G_CDS: 3.43 Total: -26.09 kcal Atomic # 7 Polarization: -76.81 SS G_CDS: -2.19 Total: -79.00 kcal Atomic # 8 Polarization: -38.76 SS G_CDS: -2.32 Total: -41.07 kcal Atomic # 14 Polarization: 39.62 SS G_CDS: 2.03 Total: 41.65 kcal Total: -70.40 0.83 -69.56 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259762976.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.762 kcal (2) G-P(sol) polarization free energy of solvation -70.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds