Wall clock time and date at job start Mon Mar 30 2020 03:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 119.99628 * 2 1 4 4 H 1.48507 * 109.47111 * 270.00502 * 3 2 1 5 5 H 1.48494 * 109.46928 * 30.00215 * 3 2 1 6 6 H 1.48491 * 109.46919 * 150.00586 * 3 2 1 7 7 C 1.37871 * 120.00170 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00150 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00282 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47291 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47289 * 179.97438 * 10 9 7 12 12 N 1.31122 * 126.53772 * 89.97399 * 11 10 9 13 13 C 1.34567 * 105.61109 * 180.02562 * 12 11 10 14 14 Br 1.89105 * 126.29910 * 180.02562 * 13 12 11 15 15 N 1.30041 * 107.39919 * 0.02562 * 13 12 11 16 16 O 1.21303 * 110.23088 * 359.97438 * 15 13 12 17 17 H 0.96993 * 120.00751 * 359.97438 * 1 2 3 18 18 H 1.08999 * 109.46848 * 60.00007 * 9 7 2 19 19 H 1.09006 * 109.46719 * 300.00472 * 9 7 2 20 20 H 1.09012 * 109.46910 * 60.00199 * 10 9 7 21 21 H 1.08997 * 109.47563 * 300.00510 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4921 -4.9671 0.0001 12 7 1.1010 -5.6433 -1.0531 13 6 0.4725 -6.7315 -0.5719 14 35 -0.3228 -8.1089 -1.5949 15 7 0.5127 -6.6617 0.7260 16 8 1.0942 -5.6557 1.0742 17 1 -0.4851 0.8399 0.0004 18 1 0.6242 -2.5567 -0.8903 19 1 0.6248 -2.5571 0.8897 20 1 2.8721 -3.6042 0.8896 21 1 2.8722 -3.6043 -0.8904 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259765211.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:33 Heat of formation + Delta-G solvation = 57.794409 kcal Electronic energy + Delta-G solvation = -10416.495099 eV Core-core repulsion = 8148.961566 eV Total energy + Delta-G solvation = -2267.533534 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 245.974 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -45.44305 -35.79858 -34.57748 -32.75124 -31.36039 -30.20552 -25.97249 -23.95217 -22.61999 -20.91655 -17.99857 -17.41662 -16.45737 -14.87199 -14.57838 -14.21680 -13.31172 -12.55632 -12.49635 -12.33706 -11.64896 -11.15395 -11.03774 -10.91692 -10.70848 -10.60696 -10.20277 -10.02569 -9.42891 -9.30957 -8.49202 -6.13368 -4.18697 0.76349 1.25963 2.25096 3.07692 3.26989 3.33819 3.36185 4.07970 4.36861 4.79452 5.23395 5.66414 5.81742 6.08505 6.12112 6.51027 7.42244 7.48379 7.81301 8.15747 8.17727 8.86390 9.46707 10.97810 Molecular weight = 245.97amu Principal moments of inertia in cm(-1) A = 0.072415 B = 0.004928 C = 0.004805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 386.569848 B = 5680.860107 C = 5826.228022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.899 3.101 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.527 4.527 8 H 0.062 0.938 9 C 0.027 3.973 10 C -0.030 4.030 11 C 0.227 3.773 12 N -0.474 5.474 13 C 0.155 3.845 14 Br 0.089 6.911 15 N -0.362 5.362 16 O 0.086 5.914 17 H 0.264 0.736 18 H 0.028 0.972 19 H 0.025 0.975 20 H 0.096 0.904 21 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.916 -14.582 -1.920 14.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.143 4.143 3 Si 0.726 3.274 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.565 4.565 8 H 0.081 0.919 9 C -0.012 4.012 10 C -0.069 4.069 11 C 0.008 3.992 12 N -0.209 5.209 13 C -0.196 4.196 14 Br 0.169 6.831 15 N -0.072 5.072 16 O 0.024 5.976 17 H 0.073 0.927 18 H 0.046 0.954 19 H 0.043 0.957 20 H 0.114 0.886 21 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.071 -15.666 -2.209 15.821 hybrid contribution 0.478 1.254 0.175 1.353 sum 0.549 -14.412 -2.035 14.565 Atomic orbital electron populations 1.69961 1.06179 1.27085 1.49659 1.25019 0.94888 0.99521 0.94835 0.86483 0.79746 0.82911 0.78222 1.20524 1.21159 1.19669 1.21040 0.93183 0.90086 1.52219 0.91936 1.19191 0.93563 0.89761 0.98640 1.20888 0.98040 0.83098 1.04858 1.29810 0.93543 0.96857 0.78988 1.72086 1.15867 1.03938 1.28969 1.27363 1.04353 0.98092 0.89796 1.96800 1.78707 1.39896 1.67729 1.74796 1.14497 1.04032 1.13838 1.85312 1.51615 1.24513 1.36151 0.92678 0.95396 0.95669 0.88593 0.87754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.73 13.29 55.43 0.74 -24.99 14 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 14 3 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 14 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 14 5 H -0.29 -6.53 7.11 56.52 0.40 -6.13 14 6 H -0.27 -6.02 7.11 56.52 0.40 -5.62 14 7 C -0.53 -13.72 9.11 -34.44 -0.31 -14.04 14 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 14 9 C 0.03 0.64 4.96 -27.88 -0.14 0.50 14 10 C -0.03 -0.54 5.78 -27.89 -0.16 -0.70 14 11 C 0.23 4.17 7.77 -13.04 -0.10 4.07 14 12 N -0.47 -8.99 11.55 -12.05 -0.14 -9.13 14 13 C 0.15 2.72 8.77 -91.19 -0.80 1.92 14 14 Br 0.09 1.20 34.13 -68.01 -2.32 -1.12 14 15 N -0.36 -6.52 12.16 29.10 0.35 -6.17 14 16 O 0.09 1.54 11.30 18.11 0.20 1.75 14 17 H 0.26 7.19 8.31 -40.82 -0.34 6.86 14 18 H 0.03 0.73 8.14 -51.93 -0.42 0.30 14 19 H 0.02 0.64 8.14 -51.93 -0.42 0.21 14 20 H 0.10 1.53 8.14 -51.92 -0.42 1.11 14 21 H 0.10 1.79 8.14 -51.93 -0.42 1.37 14 LS Contribution 223.76 15.07 3.37 3.37 Total: -1.00 -28.55 223.76 -5.66 -34.21 By element: Atomic # 1 Polarization: -5.47 SS G_CDS: -1.23 Total: -6.70 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: -1.61 Total: -6.73 kcal Atomic # 7 Polarization: -41.24 SS G_CDS: 0.95 Total: -40.29 kcal Atomic # 8 Polarization: 1.54 SS G_CDS: 0.20 Total: 1.75 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Atomic # 35 Polarization: 1.20 SS G_CDS: -2.32 Total: -1.12 kcal Total LS contribution 3.37 Total: 3.37 kcal Total: -28.55 -5.66 -34.21 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259765211.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.003 kcal (2) G-P(sol) polarization free energy of solvation -28.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds