Wall clock time and date at job start Mon Mar 30 2020 03:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 119.99628 * 2 1 4 4 H 1.48507 * 109.47111 * 270.00502 * 3 2 1 5 5 H 1.48494 * 109.46928 * 30.00215 * 3 2 1 6 6 H 1.48491 * 109.46919 * 150.00586 * 3 2 1 7 7 C 1.37871 * 120.00170 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00150 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00282 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47291 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47289 * 179.97438 * 10 9 7 12 12 N 1.31122 * 126.53772 * 89.97399 * 11 10 9 13 13 C 1.34567 * 105.61109 * 180.02562 * 12 11 10 14 14 Br 1.89105 * 126.29910 * 180.02562 * 13 12 11 15 15 N 1.30041 * 107.39919 * 0.02562 * 13 12 11 16 16 O 1.21303 * 110.23088 * 359.97438 * 15 13 12 17 17 H 0.96993 * 120.00751 * 359.97438 * 1 2 3 18 18 H 1.08999 * 109.46848 * 60.00007 * 9 7 2 19 19 H 1.09006 * 109.46719 * 300.00472 * 9 7 2 20 20 H 1.09012 * 109.46910 * 60.00199 * 10 9 7 21 21 H 1.08997 * 109.47563 * 300.00510 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4921 -4.9671 0.0001 12 7 1.1010 -5.6433 -1.0531 13 6 0.4725 -6.7315 -0.5719 14 35 -0.3228 -8.1089 -1.5949 15 7 0.5127 -6.6617 0.7260 16 8 1.0942 -5.6557 1.0742 17 1 -0.4851 0.8399 0.0004 18 1 0.6242 -2.5567 -0.8903 19 1 0.6248 -2.5571 0.8897 20 1 2.8721 -3.6042 0.8896 21 1 2.8722 -3.6043 -0.8904 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259765211.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:33 Heat of formation + Delta-G solvation = 38.673181 kcal Electronic energy + Delta-G solvation = -10417.324258 eV Core-core repulsion = 8148.961566 eV Total energy + Delta-G solvation = -2268.362693 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 245.974 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -46.85659 -37.25567 -36.24415 -34.50414 -32.76462 -31.79706 -27.80293 -25.39929 -24.31978 -22.54290 -19.45192 -18.90562 -18.38110 -16.49376 -16.24856 -15.76708 -14.93013 -14.34305 -13.89688 -13.83532 -13.43283 -12.82430 -12.69016 -12.46897 -12.18414 -12.03888 -11.84689 -11.64005 -11.32732 -10.88917 -10.54825 -8.18696 -6.30468 -0.51151 -0.16589 0.82199 1.48743 1.49292 1.60098 1.64773 2.45302 2.68172 3.17291 3.39604 4.20449 4.37977 4.51429 4.63782 4.92316 5.45449 5.53364 5.79334 6.14239 6.75446 6.85596 7.39939 8.93609 Molecular weight = 245.97amu Principal moments of inertia in cm(-1) A = 0.072415 B = 0.004928 C = 0.004805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 386.569848 B = 5680.860107 C = 5826.228022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.001 4.001 3 Si 0.969 3.031 4 H -0.275 1.275 5 H -0.289 1.289 6 H -0.255 1.255 7 C -0.536 4.536 8 H 0.081 0.919 9 C 0.031 3.969 10 C -0.015 4.015 11 C 0.226 3.774 12 N -0.490 5.490 13 C 0.146 3.854 14 Br 0.126 6.874 15 N -0.369 5.369 16 O 0.085 5.915 17 H 0.263 0.737 18 H -0.005 1.005 19 H 0.001 0.999 20 H 0.124 0.876 21 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.214 -14.802 -2.017 15.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.199 4.199 3 Si 0.794 3.206 4 H -0.201 1.201 5 H -0.215 1.215 6 H -0.179 1.179 7 C -0.574 4.574 8 H 0.099 0.901 9 C -0.007 4.007 10 C -0.054 4.054 11 C 0.007 3.993 12 N -0.225 5.225 13 C -0.204 4.204 14 Br 0.205 6.795 15 N -0.079 5.079 16 O 0.024 5.976 17 H 0.072 0.928 18 H 0.013 0.987 19 H 0.019 0.981 20 H 0.142 0.858 21 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.392 -15.897 -2.296 16.122 hybrid contribution 0.013 1.214 0.168 1.226 sum 1.405 -14.683 -2.128 14.902 Atomic orbital electron populations 1.70110 1.08074 1.27923 1.51450 1.26000 0.95662 1.03623 0.94641 0.85371 0.78804 0.78090 0.78327 1.20102 1.21483 1.17898 1.21563 0.94257 0.90845 1.50761 0.90130 1.18986 0.94043 0.91841 0.95865 1.20673 0.96733 0.80896 1.07081 1.29729 0.93518 0.96957 0.79110 1.72084 1.16329 1.04626 1.29457 1.27923 1.03898 0.98580 0.90040 1.96833 1.77975 1.37913 1.66759 1.74776 1.14743 1.04139 1.14231 1.85297 1.51620 1.24598 1.36063 0.92816 0.98690 0.98110 0.85756 0.86199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.94 13.29 21.45 0.28 -54.66 14 2 C 0.00 -0.07 5.46 84.65 0.46 0.40 14 3 Si 0.97 41.62 29.54 68.60 2.03 43.64 14 4 H -0.28 -11.56 7.11 99.48 0.71 -10.86 14 5 H -0.29 -12.44 7.11 99.48 0.71 -11.73 14 6 H -0.26 -10.18 7.11 99.48 0.71 -9.47 14 7 C -0.54 -27.51 9.11 25.60 0.23 -27.28 14 8 H 0.08 3.76 7.74 -2.91 -0.02 3.73 14 9 C 0.03 1.49 4.96 29.85 0.15 1.64 14 10 C -0.02 -0.53 5.78 29.85 0.17 -0.36 14 11 C 0.23 8.08 7.77 88.37 0.69 8.77 14 12 N -0.49 -18.13 11.55 -310.02 -3.58 -21.71 14 13 C 0.15 4.96 8.77 180.55 1.58 6.54 14 14 Br 0.13 3.20 34.13 -20.37 -0.70 2.50 14 15 N -0.37 -12.92 12.16 -65.90 -0.80 -13.72 14 16 O 0.08 2.97 11.30 74.85 0.85 3.82 14 17 H 0.26 14.63 8.31 -92.71 -0.77 13.86 14 18 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 14 19 H 0.00 0.03 8.14 -2.38 -0.02 0.01 14 20 H 0.12 3.65 8.14 -2.38 -0.02 3.63 14 21 H 0.12 3.85 8.14 -2.39 -0.02 3.84 14 Total: -1.00 -60.33 223.76 2.61 -57.71 By element: Atomic # 1 Polarization: -8.54 SS G_CDS: 1.25 Total: -7.29 kcal Atomic # 6 Polarization: -13.58 SS G_CDS: 3.29 Total: -10.30 kcal Atomic # 7 Polarization: -85.99 SS G_CDS: -4.10 Total: -90.09 kcal Atomic # 8 Polarization: 2.97 SS G_CDS: 0.85 Total: 3.82 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.64 kcal Atomic # 35 Polarization: 3.20 SS G_CDS: -0.70 Total: 2.50 kcal Total: -60.33 2.61 -57.71 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259765211.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.385 kcal (2) G-P(sol) polarization free energy of solvation -60.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds