Wall clock time and date at job start Mon Mar 30 2020 04:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30552 * 1 3 3 Si 1.86797 * 120.00408 * 2 1 4 4 H 1.48495 * 109.47473 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46861 * 299.99779 * 3 2 1 6 6 H 1.48506 * 109.47326 * 59.99597 * 3 2 1 7 7 C 1.40594 * 119.99968 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99866 * 180.02562 * 7 2 1 9 9 C 1.39104 * 119.99869 * 0.02562 * 7 2 1 10 10 N 1.31439 * 126.64526 * 0.02562 * 9 7 2 11 11 N 1.39175 * 112.34791 * 179.97438 * 10 9 7 12 12 C 1.35109 * 111.47423 * 359.91271 * 11 10 9 13 13 O 1.21300 * 127.31238 * 180.10594 * 12 11 10 14 14 C 1.51445 * 126.64827 * 180.02562 * 9 7 2 15 15 H 1.09003 * 110.56282 * 298.73861 * 14 9 7 16 16 C 1.53002 * 110.56428 * 61.43812 * 14 9 7 17 17 C 1.50692 * 109.47632 * 182.96838 * 16 14 9 18 18 C 1.38611 * 120.07902 * 125.01802 * 17 16 14 19 19 C 1.38880 * 117.96732 * 179.97438 * 18 17 16 20 20 C 1.38606 * 117.97215 * 0.02562 * 19 18 17 21 21 N 1.31934 * 119.84591 * 359.97438 * 20 19 18 22 22 N 1.28346 * 122.18125 * 0.02562 * 21 20 19 23 23 H 0.97002 * 119.99486 * 0.02562 * 1 2 3 24 24 H 0.97002 * 124.28254 * 179.97438 * 11 10 9 25 25 H 1.09005 * 109.47046 * 62.96634 * 16 14 9 26 26 H 1.09002 * 109.47038 * 302.97531 * 16 14 9 27 27 H 1.07994 * 121.01494 * 359.96196 * 18 17 16 28 28 H 1.08004 * 121.01175 * 180.02562 * 19 18 17 29 29 H 1.07998 * 120.07552 * 180.27759 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3055 0.0000 0.0000 3 14 2.2396 1.6176 0.0000 4 1 3.6996 1.3463 0.0006 5 1 1.8809 2.3963 -1.2125 6 1 1.8809 2.3965 1.2125 7 6 2.0085 -1.2176 0.0005 8 1 3.0885 -1.2176 0.0010 9 6 1.3129 -2.4222 0.0005 10 7 0.0074 -2.5743 -0.0004 11 7 -0.3693 -3.9141 -0.0007 12 6 0.7071 -4.7306 -0.0018 13 8 0.7100 -5.9436 -0.0041 14 6 1.9132 -3.8127 0.0016 15 1 2.5161 -3.9701 -0.8927 16 6 2.7540 -4.0341 1.2606 17 6 3.3976 -5.3954 1.2020 18 6 4.7719 -5.5203 1.3322 19 6 5.3186 -6.7956 1.2721 20 6 4.4562 -7.8644 1.0850 21 7 3.1594 -7.6497 0.9709 22 7 2.6542 -6.4711 1.0265 23 1 -0.4849 0.8401 -0.0004 24 1 -1.2888 -4.2232 -0.0010 25 1 2.1137 -3.9724 2.1406 26 1 3.5277 -3.2686 1.3200 27 1 5.3984 -4.6525 1.4759 28 1 6.3832 -6.9497 1.3682 29 1 4.8443 -8.8711 1.0376 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259792879.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:34 Heat of formation + Delta-G solvation = 75.782400 kcal Electronic energy + Delta-G solvation = -17200.741756 eV Core-core repulsion = 14318.974621 eV Total energy + Delta-G solvation = -2881.767135 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.71831 -39.22967 -35.72761 -34.03441 -33.48449 -32.79013 -30.64179 -28.70514 -25.86694 -25.25382 -24.22001 -22.28349 -20.19979 -19.26123 -17.10502 -16.75012 -16.43372 -16.20177 -15.30963 -14.88810 -14.60946 -14.22199 -13.57531 -13.46429 -13.13820 -12.96281 -12.47792 -11.80549 -11.61133 -11.34714 -11.17288 -10.81767 -10.46435 -10.43932 -10.26622 -9.99198 -9.45121 -9.29335 -9.14922 -8.89929 -7.84775 -7.42402 -6.65772 -4.64534 1.10273 1.21248 2.90934 3.06548 3.09723 3.39045 3.89159 3.92306 4.17539 4.37854 4.59348 4.68527 4.81360 4.90577 5.15602 5.20121 5.39982 5.43615 5.84449 5.86523 5.91259 6.02522 6.28634 6.38153 6.48325 6.60854 7.00530 7.33864 8.01939 8.20880 8.56876 8.81622 9.18116 9.47535 10.01152 10.25197 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.031238 B = 0.006827 C = 0.005689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.130955 B = 4100.363429 C = 4920.349971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.735 5.735 2 C 0.071 3.929 3 Si 0.913 3.087 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.423 4.423 8 H 0.089 0.911 9 C 0.198 3.802 10 N -0.347 5.347 11 N -0.584 5.584 12 C 0.471 3.529 13 O -0.516 6.516 14 C -0.126 4.126 15 H 0.097 0.903 16 C -0.030 4.030 17 C 0.059 3.941 18 C -0.117 4.117 19 C -0.131 4.131 20 C 0.017 3.983 21 N -0.243 5.243 22 N -0.176 5.176 23 H 0.278 0.722 24 H 0.408 0.592 25 H 0.085 0.915 26 H 0.097 0.903 27 H 0.147 0.853 28 H 0.143 0.857 29 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.489 -3.600 2.684 11.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.361 5.361 2 C -0.154 4.154 3 Si 0.737 3.263 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.463 4.463 8 H 0.107 0.893 9 C 0.034 3.966 10 N -0.171 5.171 11 N -0.324 5.324 12 C 0.254 3.746 13 O -0.390 6.390 14 C -0.150 4.150 15 H 0.115 0.885 16 C -0.070 4.070 17 C -0.085 4.085 18 C -0.147 4.147 19 C -0.160 4.160 20 C -0.146 4.146 21 N -0.085 5.085 22 N -0.019 5.019 23 H 0.090 0.910 24 H 0.248 0.752 25 H 0.104 0.896 26 H 0.115 0.885 27 H 0.165 0.835 28 H 0.161 0.839 29 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 7.902 -4.464 2.458 9.402 hybrid contribution 2.236 0.771 0.086 2.366 sum 10.137 -3.693 2.544 11.085 Atomic orbital electron populations 1.69826 1.07347 1.28643 1.30250 1.26002 0.94830 1.00960 0.93649 0.86183 0.80617 0.80964 0.78546 1.18370 1.19935 1.19909 1.18424 0.94149 0.87870 1.45865 0.89301 1.21263 0.90280 0.90425 0.94671 1.77368 1.13110 0.89467 1.37181 1.47909 1.07601 1.06096 1.70798 1.21427 0.87180 0.87914 0.78059 1.90772 1.85880 1.11243 1.51109 1.21360 0.96971 0.98026 0.98683 0.88500 1.20150 0.99120 0.89537 0.98225 1.23318 0.91921 0.98342 0.94887 1.22326 0.95860 0.98730 0.97763 1.22305 1.01654 0.93291 0.98776 1.24327 0.92361 1.00555 0.97404 1.73273 1.11534 1.15586 1.08091 1.73809 1.29698 0.93452 1.04959 0.91048 0.75245 0.89618 0.88493 0.83502 0.83911 0.81996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -18.62 11.94 55.58 0.66 -17.96 15 2 C 0.07 1.66 5.51 -17.21 -0.09 1.57 15 3 Si 0.91 17.14 29.57 -169.99 -5.03 12.11 15 4 H -0.26 -4.68 7.11 56.52 0.40 -4.28 15 5 H -0.27 -5.17 7.11 56.52 0.40 -4.77 15 6 H -0.27 -5.13 7.11 56.52 0.40 -4.73 15 7 C -0.42 -10.02 9.26 -38.37 -0.36 -10.38 15 8 H 0.09 1.88 7.85 -52.49 -0.41 1.47 15 9 C 0.20 4.89 6.37 -82.07 -0.52 4.37 15 10 N -0.35 -9.19 10.60 33.80 0.36 -8.83 15 11 N -0.58 -14.17 7.11 31.51 0.22 -13.95 15 12 C 0.47 11.40 7.98 -10.41 -0.08 11.31 15 13 O -0.52 -13.32 14.60 5.54 0.08 -13.24 15 14 C -0.13 -2.77 2.97 -92.13 -0.27 -3.04 15 15 H 0.10 2.08 8.14 -51.93 -0.42 1.66 15 16 C -0.03 -0.56 5.15 -27.89 -0.14 -0.70 15 17 C 0.06 1.05 6.25 -82.42 -0.52 0.54 15 18 C -0.12 -1.57 9.82 -39.21 -0.39 -1.95 15 19 C -0.13 -1.52 10.21 -39.21 -0.40 -1.92 15 20 C 0.02 0.23 11.31 -17.37 -0.20 0.04 15 21 N -0.24 -4.61 11.50 30.55 0.35 -4.25 15 22 N -0.18 -3.68 7.57 33.59 0.25 -3.42 15 23 H 0.28 6.40 8.29 -40.82 -0.34 6.06 15 24 H 0.41 8.96 8.96 -183.29 -1.64 7.32 15 25 H 0.09 1.66 8.14 -51.93 -0.42 1.24 15 26 H 0.10 1.51 7.86 -51.93 -0.41 1.10 15 27 H 0.15 1.47 8.00 -52.49 -0.42 1.05 15 28 H 0.14 1.06 8.06 -52.48 -0.42 0.64 15 29 H 0.16 1.57 8.06 -52.49 -0.42 1.15 15 LS Contribution 262.42 15.07 3.95 3.95 Total: -1.00 -32.04 262.42 -5.82 -37.86 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -3.71 Total: 7.91 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -2.97 Total: -0.18 kcal Atomic # 7 Polarization: -50.27 SS G_CDS: 1.85 Total: -48.42 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: 0.08 Total: -13.24 kcal Atomic # 14 Polarization: 17.14 SS G_CDS: -5.03 Total: 12.11 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -32.04 -5.82 -37.86 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259792879.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.638 kcal (2) G-P(sol) polarization free energy of solvation -32.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds