Wall clock time and date at job start Mon Mar 30 2020 04:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30552 * 1 3 3 Si 1.86797 * 120.00408 * 2 1 4 4 H 1.48495 * 109.47473 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46861 * 299.99779 * 3 2 1 6 6 H 1.48506 * 109.47326 * 59.99597 * 3 2 1 7 7 C 1.40594 * 119.99968 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99866 * 180.02562 * 7 2 1 9 9 C 1.39104 * 119.99869 * 0.02562 * 7 2 1 10 10 N 1.31439 * 126.64526 * 0.02562 * 9 7 2 11 11 N 1.39175 * 112.34791 * 179.97438 * 10 9 7 12 12 C 1.35109 * 111.47423 * 359.91271 * 11 10 9 13 13 O 1.21300 * 127.31238 * 180.10594 * 12 11 10 14 14 C 1.51445 * 126.64827 * 180.02562 * 9 7 2 15 15 H 1.09003 * 110.56282 * 298.73861 * 14 9 7 16 16 C 1.53002 * 110.56428 * 61.43812 * 14 9 7 17 17 C 1.50692 * 109.47632 * 182.96838 * 16 14 9 18 18 C 1.38611 * 120.07902 * 125.01802 * 17 16 14 19 19 C 1.38880 * 117.96732 * 179.97438 * 18 17 16 20 20 C 1.38606 * 117.97215 * 0.02562 * 19 18 17 21 21 N 1.31934 * 119.84591 * 359.97438 * 20 19 18 22 22 N 1.28346 * 122.18125 * 0.02562 * 21 20 19 23 23 H 0.97002 * 119.99486 * 0.02562 * 1 2 3 24 24 H 0.97002 * 124.28254 * 179.97438 * 11 10 9 25 25 H 1.09005 * 109.47046 * 62.96634 * 16 14 9 26 26 H 1.09002 * 109.47038 * 302.97531 * 16 14 9 27 27 H 1.07994 * 121.01494 * 359.96196 * 18 17 16 28 28 H 1.08004 * 121.01175 * 180.02562 * 19 18 17 29 29 H 1.07998 * 120.07552 * 180.27759 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3055 0.0000 0.0000 3 14 2.2396 1.6176 0.0000 4 1 3.6996 1.3463 0.0006 5 1 1.8809 2.3963 -1.2125 6 1 1.8809 2.3965 1.2125 7 6 2.0085 -1.2176 0.0005 8 1 3.0885 -1.2176 0.0010 9 6 1.3129 -2.4222 0.0005 10 7 0.0074 -2.5743 -0.0004 11 7 -0.3693 -3.9141 -0.0007 12 6 0.7071 -4.7306 -0.0018 13 8 0.7100 -5.9436 -0.0041 14 6 1.9132 -3.8127 0.0016 15 1 2.5161 -3.9701 -0.8927 16 6 2.7540 -4.0341 1.2606 17 6 3.3976 -5.3954 1.2020 18 6 4.7719 -5.5203 1.3322 19 6 5.3186 -6.7956 1.2721 20 6 4.4562 -7.8644 1.0850 21 7 3.1594 -7.6497 0.9709 22 7 2.6542 -6.4711 1.0265 23 1 -0.4849 0.8401 -0.0004 24 1 -1.2888 -4.2232 -0.0010 25 1 2.1137 -3.9724 2.1406 26 1 3.5277 -3.2686 1.3200 27 1 5.3984 -4.6525 1.4759 28 1 6.3832 -6.9497 1.3682 29 1 4.8443 -8.8711 1.0376 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259792879.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:34 Heat of formation + Delta-G solvation = 51.786251 kcal Electronic energy + Delta-G solvation = -17201.782307 eV Core-core repulsion = 14318.974621 eV Total energy + Delta-G solvation = -2882.807686 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.96565 -40.98682 -37.63334 -35.46101 -35.27563 -33.87122 -32.26164 -30.36984 -27.74748 -26.75451 -25.35051 -23.59851 -22.04737 -21.04240 -18.42183 -18.27079 -18.05530 -17.61338 -16.66780 -16.54917 -15.96081 -15.81282 -15.23572 -15.12804 -14.59362 -14.13350 -13.79808 -13.32698 -13.27615 -12.90370 -12.77131 -12.61302 -12.22165 -11.79743 -11.66339 -11.06677 -11.05470 -10.91129 -10.61868 -10.26349 -9.70178 -9.32391 -8.43385 -6.55395 0.06018 0.11887 1.31644 1.54771 1.69199 1.70292 2.31416 2.35272 2.73270 2.78751 3.16238 3.36913 3.52821 3.78585 3.89057 3.95993 4.02198 4.27807 4.30229 4.45324 4.53461 4.76891 4.95313 4.98458 5.23040 5.29188 5.47109 5.52120 6.18824 6.38930 6.75735 6.95357 7.60643 8.00847 8.14244 8.49598 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.031238 B = 0.006827 C = 0.005689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.130955 B = 4100.363429 C = 4920.349971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.025 3.975 3 Si 0.995 3.005 4 H -0.239 1.239 5 H -0.276 1.276 6 H -0.273 1.273 7 C -0.435 4.435 8 H 0.117 0.883 9 C 0.182 3.818 10 N -0.391 5.391 11 N -0.586 5.586 12 C 0.462 3.538 13 O -0.537 6.537 14 C -0.116 4.116 15 H 0.100 0.900 16 C -0.020 4.020 17 C 0.036 3.964 18 C -0.111 4.111 19 C -0.111 4.111 20 C 0.019 3.981 21 N -0.297 5.297 22 N -0.237 5.237 23 H 0.284 0.716 24 H 0.411 0.589 25 H 0.063 0.937 26 H 0.129 0.871 27 H 0.188 0.812 28 H 0.198 0.802 29 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.442 -2.650 3.054 14.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C -0.197 4.197 3 Si 0.815 3.185 4 H -0.161 1.161 5 H -0.202 1.202 6 H -0.198 1.198 7 C -0.474 4.474 8 H 0.135 0.865 9 C 0.020 3.980 10 N -0.218 5.218 11 N -0.326 5.326 12 C 0.246 3.754 13 O -0.413 6.413 14 C -0.141 4.141 15 H 0.118 0.882 16 C -0.060 4.060 17 C -0.110 4.110 18 C -0.139 4.139 19 C -0.139 4.139 20 C -0.145 4.145 21 N -0.138 5.138 22 N -0.079 5.079 23 H 0.094 0.906 24 H 0.251 0.749 25 H 0.082 0.918 26 H 0.147 0.853 27 H 0.205 0.795 28 H 0.215 0.785 29 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 11.847 -3.538 2.829 12.683 hybrid contribution 1.057 0.420 -0.028 1.138 sum 12.904 -3.117 2.801 13.567 Atomic orbital electron populations 1.69956 1.09533 1.30108 1.30874 1.27095 0.95477 1.04880 0.92227 0.84948 0.80036 0.75393 0.78115 1.16132 1.20152 1.19825 1.19026 0.95594 0.87803 1.45014 0.86546 1.21739 0.90271 0.92056 0.93964 1.77329 1.14635 0.90119 1.39684 1.47961 1.08060 1.05928 1.70692 1.21836 0.88038 0.87910 0.77616 1.90759 1.86354 1.12093 1.52111 1.21292 0.96368 0.95732 1.00658 0.88237 1.20092 0.99061 0.91603 0.95259 1.23270 0.94024 0.96980 0.96696 1.22740 0.94044 1.01142 0.96011 1.22889 1.03856 0.91574 0.95613 1.25021 0.91076 1.03260 0.95169 1.73110 1.14652 1.15256 1.10739 1.73614 1.32168 0.94737 1.07373 0.90551 0.74908 0.91803 0.85266 0.79524 0.78475 0.78267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -39.83 11.94 21.94 0.26 -39.57 15 2 C 0.02 1.15 5.51 85.46 0.47 1.62 15 3 Si 0.99 33.62 29.57 68.60 2.03 35.65 15 4 H -0.24 -7.21 7.11 99.48 0.71 -6.51 15 5 H -0.28 -9.38 7.11 99.48 0.71 -8.67 15 6 H -0.27 -9.15 7.11 99.48 0.71 -8.44 15 7 C -0.43 -20.13 9.26 23.05 0.21 -19.91 15 8 H 0.12 4.58 7.85 -2.91 -0.02 4.56 15 9 C 0.18 9.09 6.37 43.06 0.27 9.36 15 10 N -0.39 -21.45 10.60 -46.97 -0.50 -21.95 15 11 N -0.59 -29.89 7.11 -172.42 -1.23 -31.12 15 12 C 0.46 23.32 7.98 87.88 0.70 24.02 15 13 O -0.54 -29.11 14.60 -3.09 -0.05 -29.16 15 14 C -0.12 -5.18 2.97 -11.77 -0.03 -5.22 15 15 H 0.10 4.31 8.14 -2.39 -0.02 4.29 15 16 C -0.02 -0.74 5.15 29.85 0.15 -0.59 15 17 C 0.04 1.25 6.25 42.63 0.27 1.51 15 18 C -0.11 -2.54 9.82 22.51 0.22 -2.32 15 19 C -0.11 -2.04 10.21 22.51 0.23 -1.81 15 20 C 0.02 0.48 11.31 84.77 0.96 1.44 15 21 N -0.30 -11.28 11.50 -57.26 -0.66 -11.94 15 22 N -0.24 -10.11 7.57 -47.63 -0.36 -10.47 15 23 H 0.28 13.19 8.29 -92.71 -0.77 12.42 15 24 H 0.41 19.23 8.96 -213.91 -1.92 17.32 15 25 H 0.06 2.55 8.14 -2.38 -0.02 2.53 15 26 H 0.13 3.71 7.86 -2.39 -0.02 3.69 15 27 H 0.19 2.66 8.00 -2.91 -0.02 2.64 15 28 H 0.20 1.49 8.06 -2.91 -0.02 1.47 15 29 H 0.20 3.13 8.06 -2.91 -0.02 3.11 15 Total: -1.00 -74.29 262.42 2.24 -72.05 By element: Atomic # 1 Polarization: 29.12 SS G_CDS: -0.72 Total: 28.40 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: 3.46 Total: 8.10 kcal Atomic # 7 Polarization: -112.56 SS G_CDS: -2.48 Total: -115.04 kcal Atomic # 8 Polarization: -29.11 SS G_CDS: -0.05 Total: -29.16 kcal Atomic # 14 Polarization: 33.62 SS G_CDS: 2.03 Total: 35.65 kcal Total: -74.29 2.24 -72.05 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259792879.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.834 kcal (2) G-P(sol) polarization free energy of solvation -74.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds