Wall clock time and date at job start Mon Mar 30 2020 04:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30558 * 1 3 3 Si 1.86798 * 119.99811 * 2 1 4 4 H 1.48505 * 109.46920 * 269.99685 * 3 2 1 5 5 H 1.48496 * 109.47322 * 29.99517 * 3 2 1 6 6 H 1.48502 * 109.46848 * 149.99961 * 3 2 1 7 7 C 1.40589 * 120.00160 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00194 * 180.02562 * 7 2 1 9 9 C 1.39101 * 119.99775 * 0.02562 * 7 2 1 10 10 N 1.31439 * 126.65207 * 359.95830 * 9 7 2 11 11 N 1.39168 * 112.35120 * 180.02562 * 10 9 7 12 12 C 1.34783 * 111.43898 * 0.02562 * 11 10 9 13 13 O 1.21291 * 127.14483 * 180.02562 * 12 11 10 14 14 C 1.51455 * 126.64689 * 179.97438 * 9 7 2 15 15 H 1.09009 * 110.68358 * 61.33005 * 14 9 7 16 16 C 1.53001 * 110.56169 * 298.54461 * 14 9 7 17 17 C 1.50702 * 109.46952 * 179.16969 * 16 14 9 18 18 C 1.38608 * 120.07583 * 125.00405 * 17 16 14 19 19 C 1.38877 * 117.96774 * 180.02562 * 18 17 16 20 20 C 1.38602 * 117.97363 * 359.97438 * 19 18 17 21 21 N 1.31934 * 119.84436 * 0.02562 * 20 19 18 22 22 N 1.28347 * 122.18663 * 0.02562 * 21 20 19 23 23 H 0.96994 * 120.00114 * 0.02562 * 1 2 3 24 24 H 0.97002 * 124.28285 * 180.02562 * 11 10 9 25 25 H 1.09006 * 109.46986 * 59.17512 * 16 14 9 26 26 H 1.08995 * 109.47223 * 299.16953 * 16 14 9 27 27 H 1.08005 * 121.01509 * 359.97438 * 18 17 16 28 28 H 1.08004 * 121.01718 * 179.97438 * 19 18 17 29 29 H 1.07998 * 120.07984 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3056 0.0000 0.0000 3 14 2.2395 1.6177 0.0000 4 1 2.4871 2.0464 -1.4001 5 1 1.4369 2.6527 0.6999 6 1 3.5371 1.4402 0.7001 7 6 2.0086 -1.2175 0.0005 8 1 3.0885 -1.2175 0.0010 9 6 1.3130 -2.4222 0.0005 10 7 0.0075 -2.5744 0.0008 11 7 -0.3691 -3.9142 0.0013 12 6 0.7054 -4.7279 0.0019 13 8 0.7055 -5.9408 0.0020 14 6 1.9134 -3.8126 0.0005 15 1 2.5152 -3.9722 0.8953 16 6 2.7548 -4.0346 -1.2579 17 6 3.3561 -5.4161 -1.2228 18 6 3.1483 -6.2910 -2.2776 19 6 3.7222 -7.5533 -2.1995 20 6 4.4676 -7.8599 -1.0719 21 7 4.6117 -6.9621 -0.1160 22 7 4.0806 -5.7958 -0.1877 23 1 -0.4850 0.8400 -0.0004 24 1 -1.2885 -4.2233 0.0012 25 1 3.5521 -3.2923 -1.2974 26 1 2.1223 -3.9360 -2.1400 27 1 2.5575 -6.0003 -3.1337 28 1 3.5916 -8.2741 -2.9932 29 1 4.9294 -8.8314 -0.9761 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259792880.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:36 Heat of formation + Delta-G solvation = 58.545683 kcal Electronic energy + Delta-G solvation = -17150.977952 eV Core-core repulsion = 14268.463377 eV Total energy + Delta-G solvation = -2882.514575 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.76372 -39.41906 -35.97209 -34.09012 -33.57585 -32.84697 -30.74455 -28.78613 -25.96361 -25.32680 -24.29488 -22.36010 -20.30374 -19.40986 -17.05199 -16.78196 -16.58046 -16.35159 -15.34947 -15.04372 -14.83191 -14.33092 -13.63336 -13.49043 -13.16168 -13.02467 -12.54130 -12.05280 -11.60397 -11.35388 -11.17861 -10.85844 -10.71193 -10.43916 -10.33218 -9.99230 -9.69888 -9.36907 -9.35212 -9.03063 -8.03286 -7.58105 -6.71515 -4.72038 1.07522 1.21172 2.88326 3.06284 3.09271 3.22899 3.86366 3.87864 4.05241 4.30841 4.42257 4.72168 4.81290 4.90353 5.13226 5.17728 5.27531 5.46956 5.67636 5.81971 5.96441 6.05167 6.24453 6.35398 6.46264 6.63624 6.96158 7.23018 7.84860 8.11336 8.50354 8.73071 9.03828 9.23203 9.89689 10.19134 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.031814 B = 0.006611 C = 0.005827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.916130 B = 4234.051527 C = 4804.083212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.733 5.733 2 C 0.070 3.930 3 Si 0.915 3.085 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.259 1.259 7 C -0.416 4.416 8 H 0.092 0.908 9 C 0.201 3.799 10 N -0.355 5.355 11 N -0.570 5.570 12 C 0.473 3.527 13 O -0.569 6.569 14 C -0.124 4.124 15 H 0.115 0.885 16 C -0.031 4.031 17 C 0.095 3.905 18 C -0.109 4.109 19 C -0.120 4.120 20 C 0.022 3.978 21 N -0.243 5.243 22 N -0.235 5.235 23 H 0.280 0.720 24 H 0.409 0.591 25 H 0.104 0.896 26 H 0.081 0.919 27 H 0.144 0.856 28 H 0.144 0.856 29 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.750 -5.245 -5.825 9.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.358 5.358 2 C -0.155 4.155 3 Si 0.739 3.261 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.183 1.183 7 C -0.456 4.456 8 H 0.110 0.890 9 C 0.039 3.961 10 N -0.181 5.181 11 N -0.307 5.307 12 C 0.257 3.743 13 O -0.450 6.450 14 C -0.148 4.148 15 H 0.133 0.867 16 C -0.071 4.071 17 C -0.049 4.049 18 C -0.138 4.138 19 C -0.149 4.149 20 C -0.142 4.142 21 N -0.084 5.084 22 N -0.078 5.078 23 H 0.091 0.909 24 H 0.249 0.751 25 H 0.122 0.878 26 H 0.100 0.900 27 H 0.162 0.838 28 H 0.162 0.838 29 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 5.340 -5.025 -4.323 8.512 hybrid contribution -0.181 -0.410 -1.412 1.481 sum 5.159 -5.435 -5.735 9.436 Atomic orbital electron populations 1.69812 1.07415 1.28943 1.29635 1.26039 0.94857 1.01129 0.93510 0.86195 0.80399 0.80299 0.79256 1.19374 1.20185 1.18316 1.18480 0.94414 0.87782 1.44910 0.88964 1.21297 0.90204 0.90582 0.94006 1.77498 1.13129 0.88458 1.38981 1.47903 1.07588 1.06551 1.68664 1.21496 0.87790 0.87555 0.77419 1.90610 1.87112 1.12438 1.54856 1.21443 0.96216 0.97328 0.99841 0.86719 1.20167 0.98772 0.90276 0.97911 1.22895 0.93284 0.98044 0.90672 1.22237 0.97945 0.93930 0.99730 1.22292 0.96367 0.97061 0.99186 1.24156 0.97561 1.00830 0.91668 1.72963 1.14544 0.97266 1.23615 1.72868 1.05869 1.08730 1.20321 0.90883 0.75132 0.87824 0.90044 0.83810 0.83808 0.81738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -18.32 11.94 55.58 0.66 -17.66 15 2 C 0.07 1.64 5.51 -17.21 -0.09 1.55 15 3 Si 0.91 17.18 29.57 -169.99 -5.03 12.15 15 4 H -0.27 -4.97 7.11 56.52 0.40 -4.57 15 5 H -0.28 -5.19 7.11 56.52 0.40 -4.79 15 6 H -0.26 -4.78 7.11 56.52 0.40 -4.38 15 7 C -0.42 -9.89 9.30 -38.38 -0.36 -10.25 15 8 H 0.09 1.99 7.85 -52.49 -0.41 1.58 15 9 C 0.20 4.94 6.37 -82.07 -0.52 4.42 15 10 N -0.35 -9.21 10.60 33.80 0.36 -8.85 15 11 N -0.57 -13.43 7.10 31.45 0.22 -13.21 15 12 C 0.47 11.19 8.02 -10.56 -0.08 11.10 15 13 O -0.57 -14.34 17.25 5.55 0.10 -14.24 15 14 C -0.12 -2.74 2.91 -92.13 -0.27 -3.01 15 15 H 0.12 2.60 7.91 -51.92 -0.41 2.19 15 16 C -0.03 -0.58 5.13 -27.88 -0.14 -0.72 15 17 C 0.10 1.72 5.22 -82.41 -0.43 1.29 15 18 C -0.11 -1.63 9.82 -39.21 -0.39 -2.02 15 19 C -0.12 -1.53 10.21 -39.21 -0.40 -1.93 15 20 C 0.02 0.31 11.31 -17.37 -0.20 0.11 15 21 N -0.24 -4.38 11.50 30.55 0.35 -4.03 15 22 N -0.24 -4.62 11.03 33.60 0.37 -4.25 15 23 H 0.28 6.36 8.29 -40.82 -0.34 6.02 15 24 H 0.41 8.62 8.96 -183.29 -1.64 6.98 15 25 H 0.10 1.76 8.13 -51.93 -0.42 1.34 15 26 H 0.08 1.44 7.92 -51.93 -0.41 1.03 15 27 H 0.14 1.79 8.00 -52.48 -0.42 1.37 15 28 H 0.14 1.24 8.06 -52.48 -0.42 0.81 15 29 H 0.17 1.60 8.06 -52.49 -0.42 1.18 15 LS Contribution 267.28 15.07 4.03 4.03 Total: -1.00 -31.24 267.28 -5.52 -36.76 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -3.70 Total: 8.77 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: -2.88 Total: 0.54 kcal Atomic # 7 Polarization: -49.97 SS G_CDS: 1.97 Total: -48.00 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: 0.10 Total: -14.24 kcal Atomic # 14 Polarization: 17.18 SS G_CDS: -5.03 Total: 12.15 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -31.24 -5.52 -36.76 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259792880.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.304 kcal (2) G-P(sol) polarization free energy of solvation -31.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds