Wall clock time and date at job start Mon Mar 30 2020 04:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30558 * 1 3 3 Si 1.86798 * 119.99811 * 2 1 4 4 H 1.48505 * 109.46920 * 269.99685 * 3 2 1 5 5 H 1.48496 * 109.47322 * 29.99517 * 3 2 1 6 6 H 1.48502 * 109.46848 * 149.99961 * 3 2 1 7 7 C 1.40589 * 120.00160 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00194 * 180.02562 * 7 2 1 9 9 C 1.39101 * 119.99775 * 0.02562 * 7 2 1 10 10 N 1.31439 * 126.65207 * 359.95830 * 9 7 2 11 11 N 1.39168 * 112.35120 * 180.02562 * 10 9 7 12 12 C 1.34783 * 111.43898 * 0.02562 * 11 10 9 13 13 O 1.21291 * 127.14483 * 180.02562 * 12 11 10 14 14 C 1.51455 * 126.64689 * 179.97438 * 9 7 2 15 15 H 1.09009 * 110.68358 * 61.33005 * 14 9 7 16 16 C 1.53001 * 110.56169 * 298.54461 * 14 9 7 17 17 C 1.50702 * 109.46952 * 179.16969 * 16 14 9 18 18 C 1.38608 * 120.07583 * 125.00405 * 17 16 14 19 19 C 1.38877 * 117.96774 * 180.02562 * 18 17 16 20 20 C 1.38602 * 117.97363 * 359.97438 * 19 18 17 21 21 N 1.31934 * 119.84436 * 0.02562 * 20 19 18 22 22 N 1.28347 * 122.18663 * 0.02562 * 21 20 19 23 23 H 0.96994 * 120.00114 * 0.02562 * 1 2 3 24 24 H 0.97002 * 124.28285 * 180.02562 * 11 10 9 25 25 H 1.09006 * 109.46986 * 59.17512 * 16 14 9 26 26 H 1.08995 * 109.47223 * 299.16953 * 16 14 9 27 27 H 1.08005 * 121.01509 * 359.97438 * 18 17 16 28 28 H 1.08004 * 121.01718 * 179.97438 * 19 18 17 29 29 H 1.07998 * 120.07984 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3056 0.0000 0.0000 3 14 2.2395 1.6177 0.0000 4 1 2.4871 2.0464 -1.4001 5 1 1.4369 2.6527 0.6999 6 1 3.5371 1.4402 0.7001 7 6 2.0086 -1.2175 0.0005 8 1 3.0885 -1.2175 0.0010 9 6 1.3130 -2.4222 0.0005 10 7 0.0075 -2.5744 0.0008 11 7 -0.3691 -3.9142 0.0013 12 6 0.7054 -4.7279 0.0019 13 8 0.7055 -5.9408 0.0020 14 6 1.9134 -3.8126 0.0005 15 1 2.5152 -3.9722 0.8953 16 6 2.7548 -4.0346 -1.2579 17 6 3.3561 -5.4161 -1.2228 18 6 3.1483 -6.2910 -2.2776 19 6 3.7222 -7.5533 -2.1995 20 6 4.4676 -7.8599 -1.0719 21 7 4.6117 -6.9621 -0.1160 22 7 4.0806 -5.7958 -0.1877 23 1 -0.4850 0.8400 -0.0004 24 1 -1.2885 -4.2233 0.0012 25 1 3.5521 -3.2923 -1.2974 26 1 2.1223 -3.9360 -2.1400 27 1 2.5575 -6.0003 -3.1337 28 1 3.5916 -8.2741 -2.9932 29 1 4.9294 -8.8314 -0.9761 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259792880.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:36 Heat of formation + Delta-G solvation = 35.522443 kcal Electronic energy + Delta-G solvation = -17151.976314 eV Core-core repulsion = 14268.463377 eV Total energy + Delta-G solvation = -2883.512938 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.05328 -41.16426 -37.86523 -35.54620 -35.35789 -33.98055 -32.37384 -30.45426 -27.84343 -26.84469 -25.47194 -23.70934 -22.14262 -21.17856 -18.48469 -18.35661 -18.13858 -17.77241 -16.85862 -16.68696 -16.25329 -15.74406 -15.31747 -15.21643 -14.66473 -14.20880 -13.95081 -13.59323 -13.28322 -12.96160 -12.75733 -12.67397 -12.32162 -11.90882 -11.78975 -11.33090 -11.11159 -11.09719 -10.58934 -10.50621 -9.90439 -9.47159 -8.49584 -6.62657 -0.04655 0.05296 1.19963 1.52867 1.58877 1.66821 2.23409 2.29346 2.61417 2.66988 3.06591 3.31107 3.53941 3.60870 3.78004 3.87040 3.95653 4.18214 4.25474 4.37281 4.49537 4.76826 4.88981 4.91384 5.16284 5.21109 5.39018 5.40757 6.03438 6.28769 6.67707 6.86694 7.39158 7.82742 8.02946 8.42999 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.031814 B = 0.006611 C = 0.005827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.916130 B = 4234.051527 C = 4804.083212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.029 3.971 3 Si 0.993 3.007 4 H -0.260 1.260 5 H -0.276 1.276 6 H -0.251 1.251 7 C -0.431 4.431 8 H 0.110 0.890 9 C 0.186 3.814 10 N -0.392 5.392 11 N -0.567 5.567 12 C 0.470 3.530 13 O -0.588 6.588 14 C -0.115 4.115 15 H 0.103 0.897 16 C -0.023 4.023 17 C 0.075 3.925 18 C -0.122 4.122 19 C -0.104 4.104 20 C 0.025 3.975 21 N -0.282 5.282 22 N -0.277 5.277 23 H 0.287 0.713 24 H 0.416 0.584 25 H 0.113 0.887 26 H 0.086 0.914 27 H 0.167 0.833 28 H 0.194 0.806 29 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.980 -5.486 -7.191 11.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.194 4.194 3 Si 0.813 3.187 4 H -0.184 1.184 5 H -0.201 1.201 6 H -0.174 1.174 7 C -0.471 4.471 8 H 0.128 0.872 9 C 0.026 3.974 10 N -0.219 5.219 11 N -0.304 5.304 12 C 0.255 3.745 13 O -0.470 6.470 14 C -0.139 4.139 15 H 0.121 0.879 16 C -0.063 4.063 17 C -0.071 4.071 18 C -0.151 4.151 19 C -0.132 4.132 20 C -0.140 4.140 21 N -0.122 5.122 22 N -0.119 5.119 23 H 0.098 0.902 24 H 0.257 0.743 25 H 0.131 0.869 26 H 0.105 0.895 27 H 0.184 0.816 28 H 0.211 0.789 29 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 6.573 -5.270 -5.677 10.160 hybrid contribution -0.584 -0.423 -1.007 1.238 sum 5.990 -5.693 -6.684 10.629 Atomic orbital electron populations 1.69910 1.09297 1.30424 1.30026 1.27030 0.95517 1.04657 0.92187 0.85018 0.78962 0.75137 0.79574 1.18439 1.20090 1.17441 1.18989 0.95463 0.88110 1.44520 0.87235 1.21681 0.90293 0.91956 0.93515 1.77457 1.14205 0.89319 1.40964 1.47881 1.08131 1.06139 1.68280 1.21682 0.88314 0.87411 0.77083 1.90579 1.87458 1.13068 1.55914 1.21350 0.95823 0.95561 1.01182 0.87943 1.20090 0.98516 0.91673 0.96041 1.22839 0.94193 0.98166 0.91860 1.22599 0.98345 0.94526 0.99611 1.22860 0.93945 0.96764 0.99659 1.24901 0.96716 1.01477 0.90936 1.72845 1.15897 0.97670 1.25788 1.72746 1.07372 1.10102 1.21654 0.90237 0.74326 0.86925 0.89537 0.81551 0.78850 0.77567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -38.70 11.94 21.94 0.26 -38.44 15 2 C 0.03 1.32 5.51 85.46 0.47 1.79 15 3 Si 0.99 34.25 29.57 68.60 2.03 36.28 15 4 H -0.26 -8.58 7.11 99.48 0.71 -7.87 15 5 H -0.28 -9.42 7.11 99.48 0.71 -8.71 15 6 H -0.25 -8.27 7.11 99.48 0.71 -7.56 15 7 C -0.43 -20.46 9.30 23.05 0.21 -20.25 15 8 H 0.11 4.65 7.85 -2.91 -0.02 4.63 15 9 C 0.19 9.27 6.37 43.07 0.27 9.55 15 10 N -0.39 -20.75 10.60 -46.97 -0.50 -21.25 15 11 N -0.57 -27.25 7.10 -172.80 -1.23 -28.48 15 12 C 0.47 22.58 8.02 87.93 0.71 23.29 15 13 O -0.59 -29.84 17.25 -3.06 -0.05 -29.89 15 14 C -0.11 -5.18 2.91 -11.77 -0.03 -5.21 15 15 H 0.10 4.83 7.91 -2.38 -0.02 4.81 15 16 C -0.02 -0.87 5.13 29.85 0.15 -0.72 15 17 C 0.07 2.66 5.22 42.63 0.22 2.88 15 18 C -0.12 -3.40 9.82 22.51 0.22 -3.18 15 19 C -0.10 -2.26 10.21 22.51 0.23 -2.03 15 20 C 0.02 0.62 11.31 84.76 0.96 1.58 15 21 N -0.28 -9.99 11.50 -57.26 -0.66 -10.65 15 22 N -0.28 -10.95 11.03 -47.62 -0.53 -11.47 15 23 H 0.29 13.04 8.29 -92.71 -0.77 12.27 15 24 H 0.42 17.93 8.96 -213.91 -1.92 16.01 15 25 H 0.11 3.84 8.13 -2.38 -0.02 3.82 15 26 H 0.09 3.04 7.92 -2.39 -0.02 3.02 15 27 H 0.17 3.71 8.00 -2.91 -0.02 3.69 15 28 H 0.19 2.22 8.06 -2.91 -0.02 2.19 15 29 H 0.21 3.17 8.06 -2.91 -0.02 3.14 15 Total: -1.00 -68.78 267.28 2.03 -66.75 By element: Atomic # 1 Polarization: 30.15 SS G_CDS: -0.72 Total: 29.44 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: 3.42 Total: 7.70 kcal Atomic # 7 Polarization: -107.64 SS G_CDS: -2.65 Total: -110.28 kcal Atomic # 8 Polarization: -29.84 SS G_CDS: -0.05 Total: -29.89 kcal Atomic # 14 Polarization: 34.25 SS G_CDS: 2.03 Total: 36.28 kcal Total: -68.78 2.03 -66.75 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259792880.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.275 kcal (2) G-P(sol) polarization free energy of solvation -68.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds