Wall clock time and date at job start Mon Mar 30 2020 03:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00052 * 2 1 4 4 H 1.48506 * 109.47099 * 240.00142 * 3 2 1 5 5 H 1.48497 * 109.47066 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47179 * 119.99986 * 3 2 1 7 7 C 1.37881 * 120.00047 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99489 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99890 * 359.97438 * 7 2 1 10 10 C 1.50694 * 109.47091 * 180.02562 * 9 7 2 11 11 N 1.30970 * 126.43563 * 90.27384 * 10 9 7 12 12 C 1.35249 * 105.58262 * 180.12785 * 11 10 9 13 13 C 1.48293 * 126.42090 * 179.88021 * 12 11 10 14 14 C 1.39332 * 120.15589 * 359.71377 * 13 12 11 15 15 C 1.37963 * 119.93811 * 179.97438 * 14 13 12 16 16 C 1.38425 * 120.24534 * 359.97438 * 15 14 13 17 17 C 1.38134 * 120.30925 * 359.97438 * 16 15 14 18 18 C 1.38629 * 120.06439 * 0.02562 * 17 16 15 19 19 O 1.35803 * 120.12650 * 180.02562 * 18 17 16 20 20 N 1.30822 * 107.15653 * 359.62140 * 12 11 10 21 21 O 1.21288 * 110.08612 * 0.23578 * 20 12 11 22 22 H 0.97003 * 120.00174 * 359.97438 * 1 2 3 23 23 H 1.09006 * 109.46728 * 59.99906 * 9 7 2 24 24 H 1.08997 * 109.47313 * 300.00587 * 9 7 2 25 25 H 1.08007 * 120.03256 * 359.97438 * 14 13 12 26 26 H 1.08001 * 119.88433 * 180.02562 * 15 14 13 27 27 H 1.08000 * 119.84123 * 179.72963 * 16 15 14 28 28 H 1.08002 * 119.97347 * 179.97438 * 17 16 15 29 29 H 0.96695 * 114.00402 * 269.97702 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2302 -3.6446 -0.0005 11 7 2.7319 -4.2391 1.0531 12 6 3.5572 -5.1964 0.5717 13 6 4.3677 -6.1447 1.3734 14 6 4.3272 -6.0971 2.7653 15 6 5.0827 -6.9819 3.5068 16 6 5.8814 -7.9181 2.8731 17 6 5.9285 -7.9750 1.4937 18 6 5.1746 -7.0922 0.7361 19 8 5.2195 -7.1473 -0.6201 20 7 3.5020 -5.1326 -0.7338 21 8 2.7458 -4.2482 -1.0760 22 1 -0.4850 0.8401 0.0004 23 1 0.6240 -2.5566 -0.8904 24 1 0.6246 -2.5571 0.8896 25 1 3.7049 -5.3683 3.2634 26 1 5.0503 -6.9445 4.5857 27 1 6.4735 -8.6048 3.4599 28 1 6.5539 -8.7074 1.0049 29 1 5.9045 -6.5899 -1.0139 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259794247.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:38 Heat of formation + Delta-G solvation = 43.599673 kcal Electronic energy + Delta-G solvation = -16644.044671 eV Core-core repulsion = 13728.589237 eV Total energy + Delta-G solvation = -2915.455434 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -44.71571 -39.73071 -36.64784 -35.19615 -33.87970 -32.18779 -30.72083 -29.74722 -28.38301 -24.37964 -24.04654 -22.63398 -22.00189 -20.53725 -18.27445 -17.47608 -17.13375 -16.28677 -15.96038 -15.56183 -15.24810 -14.73157 -14.16221 -13.72029 -13.24778 -12.64850 -12.51632 -12.41687 -12.01063 -11.72784 -11.37093 -11.24274 -11.01987 -10.79123 -10.60573 -10.30557 -10.17207 -10.00296 -9.27175 -8.85821 -8.62692 -8.41630 -6.26298 -4.32272 0.81375 1.19342 2.09317 2.97424 3.24850 3.28798 3.32446 3.70136 3.74692 4.01053 4.19160 4.31038 4.55582 4.84418 4.99356 5.12178 5.23619 5.42691 5.52506 5.83721 5.89039 6.19847 6.29585 6.37098 6.57714 6.62579 6.73320 7.10782 7.17694 7.64063 7.66637 7.90318 8.67631 8.90843 9.32580 10.84051 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.036883 B = 0.005045 C = 0.004810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.969288 B = 5548.957744 C = 5819.384511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.067 3.933 3 Si 0.906 3.094 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.525 4.525 8 H 0.061 0.939 9 C 0.101 3.899 10 C 0.239 3.761 11 N -0.501 5.501 12 C 0.190 3.810 13 C -0.033 4.033 14 C -0.063 4.063 15 C -0.134 4.134 16 C -0.095 4.095 17 C -0.152 4.152 18 C 0.135 3.865 19 O -0.482 6.482 20 N -0.380 5.380 21 O 0.065 5.935 22 H 0.269 0.731 23 H 0.059 0.941 24 H 0.069 0.931 25 H 0.141 0.859 26 H 0.131 0.869 27 H 0.128 0.872 28 H 0.132 0.868 29 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.932 -12.155 4.094 16.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.137 4.137 3 Si 0.733 3.267 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.564 4.564 8 H 0.079 0.921 9 C 0.062 3.938 10 C 0.021 3.979 11 N -0.234 5.234 12 C -0.079 4.079 13 C -0.036 4.036 14 C -0.083 4.083 15 C -0.152 4.152 16 C -0.114 4.114 17 C -0.170 4.170 18 C 0.088 3.912 19 O -0.292 6.292 20 N -0.091 5.091 21 O 0.007 5.993 22 H 0.078 0.922 23 H 0.077 0.923 24 H 0.087 0.913 25 H 0.159 0.841 26 H 0.149 0.851 27 H 0.146 0.854 28 H 0.150 0.850 29 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 9.776 -13.006 4.028 16.762 hybrid contribution 0.696 1.351 -0.125 1.525 sum 10.472 -11.656 3.903 16.148 Atomic orbital electron populations 1.69910 1.06033 1.27754 1.48790 1.24923 0.94993 0.99428 0.94318 0.86412 0.79455 0.81868 0.78948 1.19905 1.20911 1.19944 1.20752 0.93204 0.88861 1.53590 0.92109 1.18220 0.89827 0.84445 1.01277 1.30090 0.94495 0.94518 0.78772 1.72045 1.13110 1.09099 1.29175 1.23665 0.99010 0.97176 0.88074 1.17884 0.98612 0.94507 0.92570 1.21239 0.97377 0.98036 0.91654 1.21121 0.97668 0.96084 1.00310 1.21136 0.98225 0.98116 0.93899 1.21313 1.00765 1.00766 0.94198 1.18476 0.95229 0.93870 0.83650 1.84802 1.59927 1.69309 1.15198 1.74918 1.11856 1.07713 1.14596 1.85271 1.43020 1.34290 1.36740 0.92178 0.92284 0.91296 0.84098 0.85134 0.85374 0.84995 0.75192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.57 13.29 55.43 0.74 -23.84 15 2 C 0.07 1.79 5.46 -17.82 -0.10 1.69 15 3 Si 0.91 20.66 29.54 -169.99 -5.02 15.63 15 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 15 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 15 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 15 7 C -0.53 -14.07 9.09 -34.44 -0.31 -14.39 15 8 H 0.06 1.64 7.74 -52.49 -0.41 1.23 15 9 C 0.10 2.48 5.60 -29.04 -0.16 2.32 15 10 C 0.24 5.49 7.69 -12.98 -0.10 5.39 15 11 N -0.50 -11.20 11.26 -9.88 -0.11 -11.31 15 12 C 0.19 3.91 7.78 -156.10 -1.21 2.69 15 13 C -0.03 -0.57 5.89 -104.76 -0.62 -1.18 15 14 C -0.06 -0.92 9.70 -39.28 -0.38 -1.30 15 15 C -0.13 -1.48 10.03 -39.61 -0.40 -1.88 15 16 C -0.09 -0.95 10.03 -39.55 -0.40 -1.35 15 17 C -0.15 -1.73 9.98 -39.48 -0.39 -2.13 15 18 C 0.13 1.97 6.71 -38.85 -0.26 1.71 15 19 O -0.48 -7.05 11.85 -19.12 -0.23 -7.27 15 20 N -0.38 -8.00 10.70 30.98 0.33 -7.67 15 21 O 0.06 1.43 11.29 18.02 0.20 1.63 15 22 H 0.27 7.02 8.31 -40.82 -0.34 6.68 15 23 H 0.06 1.44 8.14 -51.93 -0.42 1.02 15 24 H 0.07 1.74 8.14 -51.93 -0.42 1.32 15 25 H 0.14 2.09 7.88 -52.48 -0.41 1.68 15 26 H 0.13 1.08 8.06 -52.49 -0.42 0.66 15 27 H 0.13 0.88 8.06 -52.49 -0.42 0.46 15 28 H 0.13 1.19 8.06 -52.49 -0.42 0.77 15 29 H 0.39 4.28 9.06 45.56 0.41 4.70 15 LS Contribution 270.64 15.07 4.08 4.08 Total: -1.00 -30.15 270.64 -6.00 -36.15 By element: Atomic # 1 Polarization: 2.66 SS G_CDS: -1.66 Total: 1.00 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: -4.33 Total: -8.42 kcal Atomic # 7 Polarization: -43.76 SS G_CDS: 0.96 Total: -42.81 kcal Atomic # 8 Polarization: -5.62 SS G_CDS: -0.02 Total: -5.64 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -30.15 -6.00 -36.15 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259794247.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.748 kcal (2) G-P(sol) polarization free energy of solvation -30.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.148 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds