Wall clock time and date at job start Mon Mar 30 2020 04:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 120.00032 * 2 1 4 4 H 1.48502 * 109.47330 * 179.97438 * 3 2 1 5 5 H 1.48510 * 109.46950 * 299.99574 * 3 2 1 6 6 H 1.48494 * 109.47462 * 59.99360 * 3 2 1 7 7 C 1.37876 * 119.99594 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99510 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00378 * 0.02562 * 7 2 1 10 10 C 1.50701 * 109.47138 * 179.97438 * 9 7 2 11 11 C 1.34772 * 125.66847 * 124.99956 * 10 9 7 12 12 N 1.37617 * 107.00818 * 180.02562 * 11 10 9 13 13 C 1.37091 * 106.99181 * 0.02562 * 12 11 10 14 14 C 1.41746 * 120.90384 * 179.97438 * 13 12 11 15 15 C 1.35044 * 120.36054 * 0.02562 * 14 13 12 16 16 C 1.46986 * 118.99091 * 359.74778 * 15 14 13 17 17 N 1.32258 * 120.65907 * 180.25156 * 16 15 14 18 18 O 1.21799 * 119.99415 * 0.24148 * 17 16 15 19 19 C 1.36292 * 131.76423 * 180.02562 * 12 11 10 20 20 N 1.35100 * 120.09064 * 359.97180 * 19 12 11 21 21 N 1.32313 * 107.92279 * 0.02562 * 13 12 11 22 22 H 0.96997 * 119.99788 * 0.02562 * 1 2 3 23 23 H 1.09005 * 109.47110 * 59.99926 * 9 7 2 24 24 H 1.08990 * 109.46934 * 299.99677 * 9 7 2 25 25 H 1.07996 * 126.49406 * 0.03668 * 11 10 9 26 26 H 1.07999 * 119.81480 * 180.02562 * 14 13 12 27 27 H 1.08001 * 120.50573 * 180.02562 * 15 14 13 28 28 H 0.97001 * 120.00609 * 0.02562 * 20 19 12 29 29 H 0.97005 * 119.99665 * 179.72515 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2123 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2303 -3.6446 0.0005 11 6 2.2636 -4.6500 0.8974 12 7 3.3032 -5.4766 0.5371 13 6 3.8753 -4.9350 -0.5849 14 6 4.9850 -5.5578 -1.2092 15 6 5.4985 -6.7010 -0.7060 16 6 4.8926 -7.2838 0.4998 17 7 5.3721 -8.3996 1.0235 18 8 6.3278 -8.9522 0.5088 19 6 3.7801 -6.6284 1.0880 20 7 3.1988 -7.1413 2.1944 21 7 3.2116 -3.8312 -0.8880 22 1 -0.4850 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6241 -2.5567 0.8902 25 1 1.6001 -4.7820 1.7392 26 1 5.4222 -5.1157 -2.0922 27 1 6.3442 -7.1772 -1.1795 28 1 2.4408 -6.6901 2.5977 29 1 3.5368 -7.9633 2.5831 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259795296.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:24 Heat of formation + Delta-G solvation = 96.420181 kcal Electronic energy + Delta-G solvation = -16685.608328 eV Core-core repulsion = 13804.736114 eV Total energy + Delta-G solvation = -2880.872214 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.77603 -39.66296 -37.83994 -35.27610 -33.53472 -32.56017 -30.89884 -29.64480 -27.58804 -25.43274 -23.64583 -22.42105 -22.15062 -19.98280 -18.90668 -17.99432 -17.43904 -16.56783 -16.19526 -15.91491 -15.63833 -14.61881 -14.59149 -14.55976 -13.67308 -13.15168 -12.97765 -12.53058 -12.10703 -11.94218 -11.60311 -10.95454 -10.83034 -10.81221 -10.21667 -9.96369 -9.70239 -9.41269 -9.00953 -8.56784 -8.32243 -7.54954 -6.12945 -4.14525 -0.05650 1.18794 1.91503 2.17652 2.89373 3.19540 3.26531 3.34487 3.40944 3.71133 3.87459 4.39977 4.41739 4.62820 4.95148 5.23943 5.27803 5.38940 5.51558 5.76679 5.99682 6.12624 6.22841 6.30370 6.57573 6.94522 6.99664 7.29372 7.38893 7.84260 8.11328 8.28074 8.44726 8.89329 9.49160 10.98084 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.044878 B = 0.004986 C = 0.004716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.765028 B = 5614.330737 C = 5936.103933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.284 1.284 7 C -0.506 4.506 8 H 0.061 0.939 9 C 0.083 3.917 10 C 0.132 3.868 11 C -0.136 4.136 12 N -0.419 5.419 13 C 0.276 3.724 14 C -0.134 4.134 15 C -0.041 4.041 16 C -0.234 4.234 17 N -0.302 5.302 18 O 0.001 5.999 19 C 0.551 3.449 20 N -0.792 5.792 21 N -0.453 5.453 22 H 0.262 0.738 23 H 0.045 0.955 24 H 0.039 0.961 25 H 0.182 0.818 26 H 0.154 0.846 27 H 0.158 0.842 28 H 0.416 0.584 29 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.925 -14.154 3.534 15.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.210 1.210 7 C -0.544 4.544 8 H 0.079 0.921 9 C 0.045 3.955 10 C 0.006 3.994 11 C -0.257 4.257 12 N -0.106 5.106 13 C 0.027 3.973 14 C -0.157 4.157 15 C -0.066 4.066 16 C -0.360 4.360 17 N 0.161 4.839 18 O -0.333 6.333 19 C 0.319 3.681 20 N -0.331 5.331 21 N -0.172 5.172 22 H 0.072 0.928 23 H 0.063 0.937 24 H 0.057 0.943 25 H 0.199 0.801 26 H 0.172 0.828 27 H 0.175 0.825 28 H 0.248 0.752 29 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 4.549 -13.169 4.059 14.512 hybrid contribution 0.231 0.725 0.423 0.870 sum 4.780 -12.444 4.482 14.064 Atomic orbital electron populations 1.69949 1.06006 1.26906 1.50740 1.24983 0.94920 0.99375 0.95106 0.86416 0.80166 0.83169 0.77610 1.19646 1.20797 1.21016 1.21008 0.93328 0.89419 1.50684 0.92071 1.17955 0.90967 0.87701 0.98881 1.22128 0.94109 0.94779 0.88393 1.22649 0.97945 0.96680 1.08438 1.43284 1.26183 1.17015 1.24079 1.21576 0.97438 0.92173 0.86094 1.19947 0.95665 0.97074 1.02975 1.22345 0.98061 0.93611 0.92581 1.20831 1.04922 1.05095 1.05189 1.72833 0.98377 0.96881 1.15794 1.93679 1.19375 1.55711 1.64540 1.18028 0.86115 0.81368 0.82597 1.42064 1.35085 1.29743 1.26234 1.70886 1.07712 1.11787 1.26808 0.92803 0.93678 0.94272 0.80050 0.82820 0.82468 0.75168 0.73043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.80 13.29 55.43 0.74 -25.07 15 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 15 3 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 15 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 15 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 15 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 15 7 C -0.51 -14.06 9.07 -34.44 -0.31 -14.37 15 8 H 0.06 1.74 7.74 -52.48 -0.41 1.34 15 9 C 0.08 2.05 5.53 -29.04 -0.16 1.89 15 10 C 0.13 2.84 6.26 -83.01 -0.52 2.31 15 11 C -0.14 -2.31 11.08 -16.18 -0.18 -2.49 15 12 N -0.42 -6.72 2.95 -60.99 -0.18 -6.90 15 13 C 0.28 5.03 7.78 -155.92 -1.21 3.82 15 14 C -0.13 -2.00 10.04 -39.38 -0.40 -2.39 15 15 C -0.04 -0.55 9.68 -37.17 -0.36 -0.91 15 16 C -0.23 -3.33 6.86 -82.74 -0.57 -3.90 15 17 N -0.30 -4.19 10.76 33.40 0.36 -3.83 15 18 O 0.00 0.02 18.40 -4.24 -0.08 -0.06 15 19 C 0.55 7.36 7.75 -154.16 -1.20 6.16 15 20 N -0.79 -7.02 8.86 31.65 0.28 -6.74 15 21 N -0.45 -9.88 11.26 -8.88 -0.10 -9.98 15 22 H 0.26 7.12 8.31 -40.82 -0.34 6.78 15 23 H 0.05 1.20 8.14 -51.93 -0.42 0.78 15 24 H 0.04 0.96 8.10 -51.93 -0.42 0.54 15 25 H 0.18 2.35 7.72 -52.49 -0.41 1.94 15 26 H 0.15 1.97 8.06 -52.49 -0.42 1.54 15 27 H 0.16 1.74 7.62 -52.49 -0.40 1.34 15 28 H 0.42 2.76 8.01 -40.82 -0.33 2.43 15 29 H 0.43 3.19 8.09 -40.82 -0.33 2.86 15 LS Contribution 267.70 15.07 4.03 4.03 Total: -1.00 -32.29 267.70 -7.24 -39.53 By element: Atomic # 1 Polarization: 3.17 SS G_CDS: -2.27 Total: 0.90 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -5.00 Total: -8.37 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: 1.10 Total: -52.53 kcal Atomic # 8 Polarization: 0.02 SS G_CDS: -0.08 Total: -0.06 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -32.29 -7.24 -39.53 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259795296.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.951 kcal (2) G-P(sol) polarization free energy of solvation -32.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds