Wall clock time and date at job start Mon Mar 30 2020 04:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 120.00032 * 2 1 4 4 H 1.48502 * 109.47330 * 179.97438 * 3 2 1 5 5 H 1.48510 * 109.46950 * 299.99574 * 3 2 1 6 6 H 1.48494 * 109.47462 * 59.99360 * 3 2 1 7 7 C 1.37876 * 119.99594 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99510 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00378 * 0.02562 * 7 2 1 10 10 C 1.50701 * 109.47138 * 179.97438 * 9 7 2 11 11 C 1.34772 * 125.66847 * 124.99956 * 10 9 7 12 12 N 1.37617 * 107.00818 * 180.02562 * 11 10 9 13 13 C 1.37091 * 106.99181 * 0.02562 * 12 11 10 14 14 C 1.41746 * 120.90384 * 179.97438 * 13 12 11 15 15 C 1.35044 * 120.36054 * 0.02562 * 14 13 12 16 16 C 1.46986 * 118.99091 * 359.74778 * 15 14 13 17 17 N 1.32258 * 120.65907 * 180.25156 * 16 15 14 18 18 O 1.21799 * 119.99415 * 0.24148 * 17 16 15 19 19 C 1.36292 * 131.76423 * 180.02562 * 12 11 10 20 20 N 1.35100 * 120.09064 * 359.97180 * 19 12 11 21 21 N 1.32313 * 107.92279 * 0.02562 * 13 12 11 22 22 H 0.96997 * 119.99788 * 0.02562 * 1 2 3 23 23 H 1.09005 * 109.47110 * 59.99926 * 9 7 2 24 24 H 1.08990 * 109.46934 * 299.99677 * 9 7 2 25 25 H 1.07996 * 126.49406 * 0.03668 * 11 10 9 26 26 H 1.07999 * 119.81480 * 180.02562 * 14 13 12 27 27 H 1.08001 * 120.50573 * 180.02562 * 15 14 13 28 28 H 0.97001 * 120.00609 * 0.02562 * 20 19 12 29 29 H 0.97005 * 119.99665 * 179.72515 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2123 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2303 -3.6446 0.0005 11 6 2.2636 -4.6500 0.8974 12 7 3.3032 -5.4766 0.5371 13 6 3.8753 -4.9350 -0.5849 14 6 4.9850 -5.5578 -1.2092 15 6 5.4985 -6.7010 -0.7060 16 6 4.8926 -7.2838 0.4998 17 7 5.3721 -8.3996 1.0235 18 8 6.3278 -8.9522 0.5088 19 6 3.7801 -6.6284 1.0880 20 7 3.1988 -7.1413 2.1944 21 7 3.2116 -3.8312 -0.8880 22 1 -0.4850 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6241 -2.5567 0.8902 25 1 1.6001 -4.7820 1.7392 26 1 5.4222 -5.1157 -2.0922 27 1 6.3442 -7.1772 -1.1795 28 1 2.4408 -6.6901 2.5977 29 1 3.5368 -7.9633 2.5831 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259795296.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:24 Heat of formation + Delta-G solvation = 74.656933 kcal Electronic energy + Delta-G solvation = -16686.552053 eV Core-core repulsion = 13804.736114 eV Total energy + Delta-G solvation = -2881.815939 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -44.07616 -40.77037 -38.96291 -36.43743 -35.34498 -34.02859 -32.26538 -31.09063 -29.12254 -26.75462 -25.37526 -23.70268 -23.32542 -21.45761 -20.02094 -19.12291 -18.51764 -18.45214 -17.48631 -17.13736 -16.83196 -16.50549 -15.78937 -15.75120 -14.87533 -14.54068 -14.45467 -14.19051 -13.71608 -13.47154 -12.99337 -12.76704 -12.68833 -12.06966 -12.02218 -11.65717 -11.26312 -11.12239 -10.63059 -10.09369 -9.75531 -8.73704 -8.24855 -6.33787 -1.17526 0.04709 0.74456 0.93738 1.36763 1.38679 1.51360 1.85095 1.95517 2.38589 2.46199 2.74522 3.06980 3.16772 3.48214 3.85443 4.01486 4.22307 4.35316 4.48706 4.72887 5.07583 5.12797 5.19755 5.28604 5.34506 5.49336 5.61163 5.70773 6.01641 6.13794 6.73510 6.80393 7.33508 7.35812 8.85985 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.044878 B = 0.004986 C = 0.004716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.765028 B = 5614.330737 C = 5936.103933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.009 3.991 3 Si 0.962 3.038 4 H -0.273 1.273 5 H -0.276 1.276 6 H -0.272 1.272 7 C -0.522 4.522 8 H 0.046 0.954 9 C 0.093 3.907 10 C 0.082 3.918 11 C -0.102 4.102 12 N -0.422 5.422 13 C 0.272 3.728 14 C -0.155 4.155 15 C -0.020 4.020 16 C -0.253 4.253 17 N -0.298 5.298 18 O 0.001 5.999 19 C 0.554 3.446 20 N -0.760 5.760 21 N -0.505 5.505 22 H 0.267 0.733 23 H 0.012 0.988 24 H 0.036 0.964 25 H 0.223 0.777 26 H 0.168 0.832 27 H 0.184 0.816 28 H 0.431 0.569 29 H 0.445 0.555 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.983 -15.554 4.819 17.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.190 4.190 3 Si 0.787 3.213 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.197 1.197 7 C -0.561 4.561 8 H 0.064 0.936 9 C 0.056 3.944 10 C -0.044 4.044 11 C -0.223 4.223 12 N -0.107 5.107 13 C 0.022 3.978 14 C -0.177 4.177 15 C -0.045 4.045 16 C -0.379 4.379 17 N 0.165 4.835 18 O -0.333 6.333 19 C 0.319 3.681 20 N -0.300 5.300 21 N -0.225 5.225 22 H 0.076 0.924 23 H 0.030 0.970 24 H 0.054 0.946 25 H 0.240 0.760 26 H 0.185 0.815 27 H 0.201 0.799 28 H 0.265 0.735 29 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges 5.594 -14.615 5.396 16.553 hybrid contribution -0.050 0.963 0.088 0.968 sum 5.544 -13.652 5.483 15.722 Atomic orbital electron populations 1.70038 1.07242 1.27945 1.51403 1.25787 0.95795 1.02704 0.94678 0.85438 0.78630 0.79104 0.78104 1.19790 1.20205 1.19704 1.21246 0.92826 0.91286 1.50710 0.93592 1.17573 0.91253 0.88527 0.97094 1.21611 0.95346 0.96113 0.91307 1.22935 0.97267 0.94705 1.07431 1.43182 1.25918 1.17757 1.23885 1.21902 0.97715 0.91483 0.86701 1.20135 0.95564 0.97959 1.04041 1.22688 0.97711 0.92429 0.91694 1.21074 1.05505 1.05535 1.05792 1.72846 0.98385 0.96624 1.15652 1.93687 1.19399 1.55670 1.64545 1.18011 0.86159 0.80448 0.83470 1.42112 1.34358 1.29429 1.24127 1.70691 1.09069 1.14302 1.28433 0.92438 0.96966 0.94554 0.76039 0.81488 0.79884 0.73459 0.71697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.34 13.29 21.45 0.28 -54.06 15 2 C 0.01 0.50 5.46 84.65 0.46 0.96 15 3 Si 0.96 44.68 29.54 68.60 2.03 46.70 15 4 H -0.27 -12.62 7.11 99.48 0.71 -11.91 15 5 H -0.28 -12.51 7.11 99.48 0.71 -11.80 15 6 H -0.27 -12.00 7.11 99.48 0.71 -11.30 15 7 C -0.52 -30.02 9.07 25.60 0.23 -29.79 15 8 H 0.05 2.72 7.74 -2.91 -0.02 2.69 15 9 C 0.09 4.84 5.53 29.10 0.16 5.01 15 10 C 0.08 3.60 6.26 41.48 0.26 3.86 15 11 C -0.10 -3.32 11.08 82.99 0.92 -2.40 15 12 N -0.42 -12.80 2.95 -346.86 -1.02 -13.83 15 13 C 0.27 9.82 7.78 134.38 1.05 10.86 15 14 C -0.15 -4.42 10.04 22.40 0.22 -4.19 15 15 C -0.02 -0.50 9.68 23.83 0.23 -0.27 15 16 C -0.25 -6.46 6.86 42.28 0.29 -6.17 15 17 N -0.30 -7.33 10.76 -48.23 -0.52 -7.85 15 18 O 0.00 0.03 18.40 -5.23 -0.10 -0.06 15 19 C 0.55 13.16 7.75 133.83 1.04 14.19 15 20 N -0.76 -10.62 8.86 -53.76 -0.48 -11.09 15 21 N -0.51 -22.69 11.26 -182.01 -2.05 -24.74 15 22 H 0.27 14.64 8.31 -92.71 -0.77 13.87 15 23 H 0.01 0.70 8.14 -2.38 -0.02 0.68 15 24 H 0.04 1.84 8.10 -2.39 -0.02 1.82 15 25 H 0.22 5.07 7.72 -2.91 -0.02 5.05 15 26 H 0.17 4.16 8.06 -2.91 -0.02 4.13 15 27 H 0.18 3.46 7.62 -2.91 -0.02 3.44 15 28 H 0.43 3.90 8.01 -92.71 -0.74 3.15 15 29 H 0.45 4.76 8.09 -92.70 -0.75 4.01 15 Total: -1.00 -71.79 267.70 2.74 -69.05 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -0.27 Total: 3.83 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: 4.86 Total: -7.95 kcal Atomic # 7 Polarization: -107.79 SS G_CDS: -3.78 Total: -111.57 kcal Atomic # 8 Polarization: 0.03 SS G_CDS: -0.10 Total: -0.06 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.70 kcal Total: -71.79 2.74 -69.05 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259795296.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.705 kcal (2) G-P(sol) polarization free energy of solvation -71.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds