Wall clock time and date at job start Mon Mar 30 2020 03:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.34408 * 125.49969 * 2 1 4 4 C 1.46675 * 105.99018 * 179.97438 * 3 2 1 5 5 C 1.35870 * 105.78910 * 359.92598 * 4 3 2 6 6 O 1.33969 * 108.47616 * 0.12091 * 5 4 3 7 7 C 1.51058 * 106.98138 * 179.97438 * 5 4 3 8 8 C 1.50791 * 105.68623 * 0.08279 * 7 5 4 9 9 C 1.35652 * 107.50487 * 359.96348 * 8 7 5 10 10 N 1.36152 * 107.49521 * 180.02562 * 9 8 7 11 11 C 1.30821 * 109.32614 * 359.97438 * 10 9 8 12 12 O 1.35407 * 125.65947 * 179.97438 * 11 10 9 13 13 N 1.36872 * 108.68466 * 0.02562 * 11 10 9 14 14 C 1.37462 * 126.44098 * 179.97438 * 13 11 10 15 15 H 1.07995 * 120.00322 * 333.09859 * 14 13 11 16 16 C 1.38808 * 119.99460 * 153.10661 * 14 13 11 17 17 N 1.31425 * 120.00270 * 342.13693 * 16 14 13 18 18 Si 1.86802 * 120.00166 * 162.14109 * 16 14 13 19 19 H 1.48503 * 109.46714 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47183 * 119.99471 * 18 16 14 21 21 H 1.48495 * 109.47382 * 239.99609 * 18 16 14 22 22 H 1.08999 * 109.46571 * 90.00527 * 1 2 3 23 23 H 1.09001 * 109.46839 * 210.00033 * 1 2 3 24 24 H 1.08999 * 109.46693 * 330.00375 * 1 2 3 25 25 H 1.07994 * 127.00468 * 0.02562 * 3 2 1 26 26 H 1.09007 * 110.21897 * 241.01174 * 7 5 4 27 27 H 1.08995 * 110.22212 * 119.16618 * 7 5 4 28 28 H 0.96702 * 113.99370 * 89.97876 * 12 11 10 29 29 H 0.97001 * 120.00267 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2876 1.0942 0.0000 4 6 3.6701 0.6044 0.0006 5 6 3.5819 -0.7514 0.0026 6 8 2.2864 -1.0927 0.0005 7 6 4.9950 -1.2854 0.0027 8 6 5.8896 -0.0715 0.0026 9 6 5.0902 1.0244 0.0016 10 7 5.8981 2.1203 0.0009 11 6 7.1486 1.7363 0.0020 12 8 8.2262 2.5562 0.0012 13 7 7.1872 0.3681 0.0028 14 6 8.3156 -0.4170 0.0035 15 1 9.2353 -0.0410 -0.4197 16 6 8.2728 -1.6931 0.5480 17 7 7.2966 -2.0279 1.3618 18 14 9.6027 -2.9345 0.1242 19 1 10.5801 -2.3145 -0.8061 20 1 10.2995 -3.3567 1.3658 21 1 8.9855 -4.1193 -0.5242 22 1 -0.3632 -0.0001 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 1.9629 2.1242 0.0004 26 1 5.1717 -1.8836 -0.8913 27 1 5.1717 -1.8836 0.8966 28 1 8.5386 2.7959 0.8844 29 1 7.2665 -2.9198 1.7420 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259798232.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:21 Heat of formation + Delta-G solvation = 70.621096 kcal Electronic energy + Delta-G solvation = -17344.918174 eV Core-core repulsion = 14430.634477 eV Total energy + Delta-G solvation = -2914.283697 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.02976 -40.59262 -36.47003 -34.56906 -33.77823 -32.38314 -30.98734 -29.20434 -25.65049 -25.42688 -24.27247 -21.59056 -20.18315 -19.58499 -18.56630 -17.83295 -16.50301 -15.95703 -15.80153 -15.30233 -14.56380 -14.15850 -13.80015 -13.34394 -12.90094 -12.78746 -12.74110 -12.24458 -12.04865 -11.89275 -11.56602 -11.40752 -11.05604 -10.80622 -10.64539 -10.41344 -9.89497 -9.19735 -8.62701 -8.47246 -7.68527 -7.00877 -6.64178 -4.68684 2.28142 2.74168 2.84725 2.89025 2.96659 3.02376 3.30741 3.69931 4.17065 4.47559 4.57280 4.85224 4.97579 5.37419 5.58392 5.64181 5.75899 5.89907 6.04812 6.06184 6.35990 6.45003 6.60005 6.76589 6.95566 6.97413 7.11219 7.33617 7.58068 7.90357 8.01255 8.28743 8.50497 9.21685 9.35321 10.04707 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.026602 B = 0.007925 C = 0.006243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.290108 B = 3532.193452 C = 4483.759910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.030 4.030 3 C -0.185 4.185 4 C -0.087 4.087 5 C -0.054 4.054 6 O -0.160 6.160 7 C 0.088 3.912 8 C -0.010 4.010 9 C -0.005 4.005 10 N -0.483 5.483 11 C 0.293 3.707 12 O -0.440 6.440 13 N -0.236 5.236 14 C -0.351 4.351 15 H 0.116 0.884 16 C 0.053 3.947 17 N -0.824 5.824 18 Si 0.937 3.063 19 H -0.261 1.261 20 H -0.273 1.273 21 H -0.270 1.270 22 H 0.075 0.925 23 H 0.072 0.928 24 H 0.084 0.916 25 H 0.145 0.855 26 H 0.084 0.916 27 H 0.124 0.876 28 H 0.378 0.622 29 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.009 -1.766 -0.251 6.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.079 4.079 3 C -0.204 4.204 4 C -0.090 4.090 5 C -0.106 4.106 6 O -0.058 6.058 7 C 0.051 3.949 8 C -0.136 4.136 9 C -0.136 4.136 10 N -0.213 5.213 11 C -0.002 4.002 12 O -0.238 6.238 13 N 0.087 4.913 14 C -0.480 4.480 15 H 0.134 0.866 16 C -0.160 4.160 17 N -0.454 5.454 18 Si 0.761 3.239 19 H -0.185 1.185 20 H -0.199 1.199 21 H -0.195 1.195 22 H 0.094 0.906 23 H 0.091 0.909 24 H 0.103 0.897 25 H 0.163 0.837 26 H 0.102 0.898 27 H 0.141 0.859 28 H 0.232 0.768 29 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.171 -1.376 -0.734 6.365 hybrid contribution 1.150 -0.991 0.516 1.603 sum -5.021 -2.367 -0.218 5.556 Atomic orbital electron populations 1.20186 0.85228 1.03533 1.02986 1.22129 0.93333 0.83795 1.08628 1.22045 0.90725 0.98715 1.08962 1.19823 0.89789 0.93092 1.06281 1.22560 0.84526 0.95413 1.08056 1.83395 1.14266 1.34466 1.73656 1.18113 0.78855 0.93721 1.04244 1.19639 0.84337 0.96152 1.13451 1.18252 0.90125 0.89427 1.15795 1.69908 0.98270 1.29726 1.23358 1.19666 0.85868 0.78575 1.16057 1.84810 1.43058 1.63340 1.32581 1.40930 1.03978 1.04761 1.41584 1.20042 0.90101 0.96915 1.40920 0.86649 1.25598 0.98610 0.98536 0.93240 1.69933 1.31474 1.21404 1.22597 0.85708 0.79749 0.79411 0.79072 1.18488 1.19869 1.19504 0.90606 0.90902 0.89701 0.83738 0.89816 0.85872 0.76844 0.90533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.69 10.41 36.01 0.37 -0.32 15 2 C -0.03 -0.51 7.29 -35.66 -0.26 -0.77 15 3 C -0.18 -3.58 11.05 -37.53 -0.41 -3.99 15 4 C -0.09 -2.06 7.24 -103.30 -0.75 -2.80 15 5 C -0.05 -1.19 8.48 -34.98 -0.30 -1.49 15 6 O -0.16 -3.13 10.55 6.84 0.07 -3.06 15 7 C 0.09 2.01 5.93 -28.82 -0.17 1.84 15 8 C -0.01 -0.27 6.58 -81.16 -0.53 -0.80 15 9 C 0.00 -0.13 8.05 -82.83 -0.67 -0.80 15 10 N -0.48 -13.13 11.34 -10.90 -0.12 -13.26 15 11 C 0.29 7.67 9.01 -88.41 -0.80 6.87 15 12 O -0.44 -9.81 13.53 -17.91 -0.24 -10.05 15 13 N -0.24 -6.33 2.89 -58.97 -0.17 -6.50 15 14 C -0.35 -8.95 9.94 -14.82 -0.15 -9.09 15 15 H 0.12 2.83 7.89 -52.49 -0.41 2.41 15 16 C 0.05 1.24 5.27 -17.52 -0.09 1.15 15 17 N -0.82 -20.01 9.94 55.49 0.55 -19.45 15 18 Si 0.94 17.92 29.59 -169.99 -5.03 12.89 15 19 H -0.26 -4.96 7.11 56.52 0.40 -4.55 15 20 H -0.27 -5.16 7.11 56.52 0.40 -4.76 15 21 H -0.27 -5.09 7.11 56.52 0.40 -4.69 15 22 H 0.08 0.72 8.14 -51.93 -0.42 0.30 15 23 H 0.07 0.71 8.14 -51.93 -0.42 0.29 15 24 H 0.08 0.77 8.14 -51.93 -0.42 0.35 15 25 H 0.14 2.45 8.06 -52.49 -0.42 2.02 15 26 H 0.08 1.78 8.14 -51.93 -0.42 1.35 15 27 H 0.12 2.82 6.37 -51.93 -0.33 2.49 15 28 H 0.38 6.47 9.06 45.56 0.41 6.88 15 29 H 0.28 6.25 8.31 -40.82 -0.34 5.92 15 LS Contribution 260.67 15.07 3.93 3.93 Total: -1.00 -31.35 260.67 -6.35 -37.70 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -1.58 Total: 8.02 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: -3.75 Total: -10.21 kcal Atomic # 7 Polarization: -39.47 SS G_CDS: 0.26 Total: -39.22 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: -0.17 Total: -13.11 kcal Atomic # 14 Polarization: 17.92 SS G_CDS: -5.03 Total: 12.89 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -31.35 -6.35 -37.70 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259798232.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.318 kcal (2) G-P(sol) polarization free energy of solvation -31.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds