Wall clock time and date at job start Mon Mar 30 2020 03:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.34408 * 125.49969 * 2 1 4 4 C 1.46675 * 105.99018 * 179.97438 * 3 2 1 5 5 C 1.35870 * 105.78910 * 359.92598 * 4 3 2 6 6 O 1.33969 * 108.47616 * 0.12091 * 5 4 3 7 7 C 1.51058 * 106.98138 * 179.97438 * 5 4 3 8 8 C 1.50791 * 105.68623 * 0.08279 * 7 5 4 9 9 C 1.35652 * 107.50487 * 359.96348 * 8 7 5 10 10 N 1.36152 * 107.49521 * 180.02562 * 9 8 7 11 11 C 1.30821 * 109.32614 * 359.97438 * 10 9 8 12 12 O 1.35407 * 125.65947 * 179.97438 * 11 10 9 13 13 N 1.36872 * 108.68466 * 0.02562 * 11 10 9 14 14 C 1.37462 * 126.44098 * 179.97438 * 13 11 10 15 15 H 1.07995 * 120.00322 * 333.09859 * 14 13 11 16 16 C 1.38808 * 119.99460 * 153.10661 * 14 13 11 17 17 N 1.31425 * 120.00270 * 342.13693 * 16 14 13 18 18 Si 1.86802 * 120.00166 * 162.14109 * 16 14 13 19 19 H 1.48503 * 109.46714 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47183 * 119.99471 * 18 16 14 21 21 H 1.48495 * 109.47382 * 239.99609 * 18 16 14 22 22 H 1.08999 * 109.46571 * 90.00527 * 1 2 3 23 23 H 1.09001 * 109.46839 * 210.00033 * 1 2 3 24 24 H 1.08999 * 109.46693 * 330.00375 * 1 2 3 25 25 H 1.07994 * 127.00468 * 0.02562 * 3 2 1 26 26 H 1.09007 * 110.21897 * 241.01174 * 7 5 4 27 27 H 1.08995 * 110.22212 * 119.16618 * 7 5 4 28 28 H 0.96702 * 113.99370 * 89.97876 * 12 11 10 29 29 H 0.97001 * 120.00267 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2876 1.0942 0.0000 4 6 3.6701 0.6044 0.0006 5 6 3.5819 -0.7514 0.0026 6 8 2.2864 -1.0927 0.0005 7 6 4.9950 -1.2854 0.0027 8 6 5.8896 -0.0715 0.0026 9 6 5.0902 1.0244 0.0016 10 7 5.8981 2.1203 0.0009 11 6 7.1486 1.7363 0.0020 12 8 8.2262 2.5562 0.0012 13 7 7.1872 0.3681 0.0028 14 6 8.3156 -0.4170 0.0035 15 1 9.2353 -0.0410 -0.4197 16 6 8.2728 -1.6931 0.5480 17 7 7.2966 -2.0279 1.3618 18 14 9.6027 -2.9345 0.1242 19 1 10.5801 -2.3145 -0.8061 20 1 10.2995 -3.3567 1.3658 21 1 8.9855 -4.1193 -0.5242 22 1 -0.3632 -0.0001 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 1.9629 2.1242 0.0004 26 1 5.1717 -1.8836 -0.8913 27 1 5.1717 -1.8836 0.8966 28 1 8.5386 2.7959 0.8844 29 1 7.2665 -2.9198 1.7420 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259798232.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:21 Heat of formation + Delta-G solvation = 47.958112 kcal Electronic energy + Delta-G solvation = -17345.900914 eV Core-core repulsion = 14430.634477 eV Total energy + Delta-G solvation = -2915.266438 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.66586 -42.44446 -38.27676 -36.38357 -35.60417 -33.72435 -32.91766 -30.59876 -27.45777 -27.29141 -25.82418 -23.30540 -22.08116 -21.22922 -20.33253 -19.59812 -18.38624 -17.68755 -17.38466 -17.00769 -16.25204 -15.95774 -15.39441 -15.02695 -14.53378 -14.03404 -13.94858 -13.82090 -13.64021 -13.44666 -13.12419 -13.00122 -12.81193 -12.49329 -12.19315 -12.07319 -11.70361 -10.93050 -10.60933 -10.24992 -9.31414 -8.83064 -8.51576 -6.61710 0.66487 1.07035 1.24155 1.30992 1.40238 1.55824 1.58964 2.06162 2.37895 2.57823 2.73556 3.04081 3.56221 4.00897 4.09959 4.23449 4.49788 4.52853 4.58519 4.80808 4.82456 4.88402 4.98041 5.08898 5.21493 5.30088 5.34451 5.63192 5.84105 6.11409 6.31694 6.48194 6.63250 7.26521 7.43684 8.26543 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.026602 B = 0.007925 C = 0.006243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.290108 B = 3532.193452 C = 4483.759910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.002 4.002 3 C -0.210 4.210 4 C -0.124 4.124 5 C -0.059 4.059 6 O -0.159 6.159 7 C 0.097 3.903 8 C -0.037 4.037 9 C -0.029 4.029 10 N -0.510 5.510 11 C 0.275 3.725 12 O -0.439 6.439 13 N -0.246 5.246 14 C -0.387 4.387 15 H 0.117 0.883 16 C 0.021 3.979 17 N -0.846 5.846 18 Si 1.012 2.988 19 H -0.260 1.260 20 H -0.265 1.265 21 H -0.261 1.261 22 H 0.100 0.900 23 H 0.091 0.909 24 H 0.110 0.890 25 H 0.164 0.836 26 H 0.094 0.906 27 H 0.120 0.880 28 H 0.400 0.600 29 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.194 -3.124 -0.290 7.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.051 4.051 3 C -0.229 4.229 4 C -0.127 4.127 5 C -0.111 4.111 6 O -0.057 6.057 7 C 0.059 3.941 8 C -0.162 4.162 9 C -0.160 4.160 10 N -0.241 5.241 11 C -0.019 4.019 12 O -0.240 6.240 13 N 0.077 4.923 14 C -0.514 4.514 15 H 0.134 0.866 16 C -0.190 4.190 17 N -0.475 5.475 18 Si 0.831 3.169 19 H -0.183 1.183 20 H -0.189 1.189 21 H -0.186 1.186 22 H 0.118 0.882 23 H 0.110 0.890 24 H 0.128 0.872 25 H 0.182 0.818 26 H 0.112 0.888 27 H 0.138 0.862 28 H 0.257 0.743 29 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.371 -2.715 -0.753 7.891 hybrid contribution 1.437 -0.526 0.574 1.634 sum -5.934 -3.240 -0.179 6.764 Atomic orbital electron populations 1.20545 0.80304 1.05727 1.05213 1.23283 0.95486 0.82147 1.04138 1.22332 0.88986 1.00611 1.11018 1.20197 0.90294 0.94211 1.07953 1.22361 0.85258 0.94759 1.08695 1.83437 1.13220 1.35565 1.73496 1.17990 0.79107 0.92545 1.04413 1.20261 0.84396 0.97567 1.13980 1.18920 0.91956 0.89472 1.15689 1.69859 0.98977 1.30517 1.24748 1.19977 0.86466 0.79190 1.16307 1.84735 1.41981 1.62676 1.34572 1.41171 1.04610 1.05033 1.41453 1.20414 0.90129 0.98152 1.42730 0.86586 1.26571 1.00856 0.99358 0.92173 1.69986 1.32731 1.22360 1.22420 0.84626 0.76696 0.76552 0.78988 1.18317 1.18940 1.18578 0.88151 0.89028 0.87152 0.81814 0.88841 0.86240 0.74328 0.89478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.08 10.41 71.24 0.74 -0.34 15 2 C 0.00 -0.06 7.29 24.81 0.18 0.12 15 3 C -0.21 -7.91 11.05 23.60 0.26 -7.65 15 4 C -0.12 -5.93 7.24 -19.01 -0.14 -6.07 15 5 C -0.06 -2.61 8.48 25.25 0.21 -2.40 15 6 O -0.16 -5.99 10.55 1.56 0.02 -5.97 15 7 C 0.10 4.51 5.93 29.24 0.17 4.68 15 8 C -0.04 -1.99 6.58 41.18 0.27 -1.72 15 9 C -0.03 -1.62 8.05 40.49 0.33 -1.30 15 10 N -0.51 -28.83 11.34 -302.12 -3.43 -32.25 15 11 C 0.27 14.90 9.01 179.58 1.62 16.52 15 12 O -0.44 -20.04 13.53 -87.01 -1.18 -21.22 15 13 N -0.25 -13.62 2.89 -451.03 -1.30 -14.92 15 14 C -0.39 -20.04 9.94 83.95 0.83 -19.20 15 15 H 0.12 5.79 7.89 -2.91 -0.02 5.77 15 16 C 0.02 0.99 5.27 84.89 0.45 1.44 15 17 N -0.85 -41.03 9.94 21.63 0.22 -40.82 15 18 Si 1.01 35.88 29.59 68.60 2.03 37.91 15 19 H -0.26 -9.07 7.11 99.48 0.71 -8.36 15 20 H -0.26 -8.99 7.11 99.48 0.71 -8.28 15 21 H -0.26 -8.87 7.11 99.48 0.71 -8.17 15 22 H 0.10 1.39 8.14 -2.39 -0.02 1.37 15 23 H 0.09 1.34 8.14 -2.39 -0.02 1.33 15 24 H 0.11 1.46 8.14 -2.39 -0.02 1.44 15 25 H 0.16 5.32 8.06 -2.91 -0.02 5.30 15 26 H 0.09 4.04 8.14 -2.38 -0.02 4.02 15 27 H 0.12 5.59 6.37 -2.39 -0.02 5.57 15 28 H 0.40 13.96 9.06 -74.06 -0.67 13.29 15 29 H 0.29 12.77 8.31 -92.71 -0.77 12.00 15 Total: -1.00 -69.73 260.67 1.83 -67.91 By element: Atomic # 1 Polarization: 24.74 SS G_CDS: 0.54 Total: 25.28 kcal Atomic # 6 Polarization: -20.85 SS G_CDS: 4.93 Total: -15.92 kcal Atomic # 7 Polarization: -83.48 SS G_CDS: -4.51 Total: -87.99 kcal Atomic # 8 Polarization: -26.03 SS G_CDS: -1.16 Total: -27.19 kcal Atomic # 14 Polarization: 35.88 SS G_CDS: 2.03 Total: 37.91 kcal Total: -69.73 1.83 -67.91 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259798232.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.863 kcal (2) G-P(sol) polarization free energy of solvation -69.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds