Wall clock time and date at job start Mon Mar 30 2020 03:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30514 * 1 3 3 Si 1.86803 * 120.00032 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00005 * 3 2 1 5 5 H 1.48501 * 109.47062 * 29.99956 * 3 2 1 6 6 H 1.48495 * 109.46833 * 149.99578 * 3 2 1 7 7 C 1.40467 * 119.99901 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99617 * 179.97438 * 7 2 1 9 9 C 1.40458 * 119.99992 * 0.28017 * 7 2 1 10 10 O 1.34685 * 126.74155 * 359.40712 * 9 7 2 11 11 N 1.20836 * 112.06849 * 179.78605 * 10 9 7 12 12 H 0.96994 * 124.17235 * 180.21685 * 11 10 9 13 13 C 1.34709 * 111.65901 * 0.49251 * 11 10 9 14 14 O 1.22042 * 126.96551 * 179.71576 * 13 11 10 15 15 C 1.39586 * 126.73942 * 179.72546 * 9 7 2 16 16 C 1.50697 * 128.15995 * 359.95642 * 15 9 7 17 17 C 1.50704 * 109.46621 * 95.00089 * 16 15 9 18 18 C 1.38645 * 120.79291 * 269.72139 * 17 16 15 19 19 C 1.38207 * 119.16207 * 179.80463 * 18 17 16 20 20 N 1.31867 * 120.76174 * 0.48042 * 19 18 17 21 21 C 1.31867 * 121.72924 * 359.74881 * 20 19 18 22 22 C 1.38203 * 120.76348 * 0.02562 * 21 20 19 23 23 H 0.97005 * 119.99934 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.47605 * 215.00640 * 16 15 9 25 25 H 1.09008 * 109.47100 * 335.00993 * 16 15 9 26 26 H 1.08004 * 120.41945 * 0.02562 * 18 17 16 27 27 H 1.08007 * 119.61694 * 180.20769 * 19 18 17 28 28 H 1.08000 * 119.61728 * 179.97438 * 21 20 19 29 29 H 1.08001 * 120.41719 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3051 0.0000 0.0000 3 14 2.2392 1.6178 0.0000 4 1 2.4867 2.0464 -1.4001 5 1 1.4366 2.6527 0.7000 6 1 3.5366 1.4401 0.7001 7 6 2.0075 -1.2165 0.0005 8 1 3.0875 -1.2164 0.0001 9 6 1.3052 -2.4329 -0.0049 10 8 -0.0324 -2.5910 0.0003 11 7 -0.3518 -3.7563 -0.0107 12 1 -1.2698 -4.0696 -0.0124 13 6 0.7242 -4.5668 -0.0143 14 8 0.7237 -5.7872 -0.0200 15 6 1.8564 -3.7153 -0.0104 16 6 3.3127 -4.1028 -0.0129 17 6 3.7670 -4.3574 1.4012 18 6 4.2915 -3.3324 2.1737 19 6 4.6940 -3.6027 3.4679 20 7 4.5924 -4.8197 3.9656 21 6 4.1030 -5.8194 3.2586 22 6 3.6761 -5.6236 1.9588 23 1 -0.4850 0.8401 -0.0004 24 1 3.4471 -5.0072 -0.6062 25 1 3.9031 -3.2942 -0.4442 26 1 4.3810 -2.3345 1.7703 27 1 5.1004 -2.8090 4.0773 28 1 4.0357 -6.8027 3.7001 29 1 3.2765 -6.4465 1.3847 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259817440.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:29 Heat of formation + Delta-G solvation = 35.276084 kcal Electronic energy + Delta-G solvation = -17320.174552 eV Core-core repulsion = 14404.358180 eV Total energy + Delta-G solvation = -2915.816372 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.00063 -39.46631 -36.47689 -34.73665 -33.62755 -31.14987 -30.58690 -30.11514 -27.42549 -26.05431 -22.82805 -21.95589 -21.05524 -20.11276 -17.68310 -17.32177 -16.22560 -15.79533 -15.68910 -15.51684 -14.94459 -14.17819 -13.72651 -13.34588 -13.06780 -13.02163 -12.36480 -12.03149 -11.95417 -11.79671 -11.62260 -11.39775 -11.15042 -10.72563 -10.47822 -9.99967 -8.99014 -8.82949 -8.56615 -8.46674 -8.43008 -7.36957 -7.04025 -5.18484 1.73527 1.93590 2.56056 2.79798 2.84825 3.15264 3.51877 3.83524 4.22605 4.42637 4.75969 4.96095 5.29239 5.37014 5.59852 5.77625 5.83133 6.07120 6.23545 6.40048 6.52283 6.61453 6.73243 6.87863 6.94623 7.10464 7.31291 7.37865 7.60039 7.77642 8.01207 8.18375 8.49931 9.36791 9.58936 9.84600 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.019585 B = 0.009183 C = 0.006765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.307936 B = 3048.424867 C = 4138.242937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.755 5.755 2 C 0.067 3.933 3 Si 0.930 3.070 4 H -0.261 1.261 5 H -0.271 1.271 6 H -0.253 1.253 7 C -0.409 4.409 8 H 0.118 0.882 9 C 0.259 3.741 10 O -0.013 6.013 11 N -0.595 5.595 12 H 0.433 0.567 13 C 0.496 3.504 14 O -0.604 6.604 15 C -0.498 4.498 16 C 0.052 3.948 17 C -0.009 4.009 18 C -0.167 4.167 19 C 0.085 3.915 20 N -0.505 5.505 21 C 0.085 3.915 22 C -0.165 4.165 23 H 0.295 0.705 24 H 0.060 0.940 25 H 0.067 0.933 26 H 0.133 0.867 27 H 0.146 0.854 28 H 0.145 0.855 29 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.234 2.211 1.083 4.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.379 5.379 2 C -0.158 4.158 3 Si 0.752 3.248 4 H -0.186 1.186 5 H -0.196 1.196 6 H -0.176 1.176 7 C -0.438 4.438 8 H 0.136 0.864 9 C 0.205 3.795 10 O -0.024 6.024 11 N -0.285 5.285 12 H 0.280 0.720 13 C 0.304 3.696 14 O -0.495 6.495 15 C -0.505 4.505 16 C 0.014 3.986 17 C -0.017 4.017 18 C -0.187 4.187 19 C -0.071 4.071 20 N -0.215 5.215 21 C -0.071 4.071 22 C -0.185 4.185 23 H 0.106 0.894 24 H 0.079 0.921 25 H 0.085 0.915 26 H 0.151 0.849 27 H 0.164 0.836 28 H 0.163 0.837 29 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 4.124 1.707 1.939 4.866 hybrid contribution -0.694 0.836 -0.812 1.356 sum 3.430 2.543 1.127 4.416 Atomic orbital electron populations 1.69575 1.08016 1.31293 1.28972 1.26368 0.95167 1.02774 0.91511 0.85909 0.80427 0.78511 0.79966 1.18606 1.19556 1.17612 1.19197 0.95099 0.86534 1.42941 0.86410 1.20049 0.78211 0.94430 0.86829 1.84379 1.24917 1.09192 1.83902 1.43044 1.09837 0.97781 1.77875 0.71980 1.17807 0.84226 0.87661 0.79896 1.90730 1.86211 1.11693 1.60846 1.19974 0.93951 0.92025 1.44586 1.18016 0.91009 1.00066 0.89474 1.20803 0.90326 0.92294 0.98298 1.22068 1.00837 1.00283 0.95520 1.22580 0.97241 0.93870 0.93406 1.67559 1.15567 1.00560 1.37800 1.22568 0.95458 0.97639 0.91466 1.22096 1.01160 0.98427 0.96827 0.89355 0.92125 0.91498 0.84920 0.83625 0.83720 0.85060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -16.89 12.06 55.57 0.67 -16.22 15 2 C 0.07 1.43 5.50 -17.27 -0.10 1.33 15 3 Si 0.93 15.47 29.56 -169.99 -5.03 10.44 15 4 H -0.26 -4.31 7.11 56.52 0.40 -3.91 15 5 H -0.27 -4.47 7.11 56.52 0.40 -4.07 15 6 H -0.25 -4.09 7.11 56.52 0.40 -3.69 15 7 C -0.41 -9.17 9.19 -37.91 -0.35 -9.52 15 8 H 0.12 2.40 7.41 -52.49 -0.39 2.01 15 9 C 0.26 6.33 6.89 -38.24 -0.26 6.07 15 10 O -0.01 -0.32 9.56 15.44 0.15 -0.17 15 11 N -0.59 -13.73 6.72 29.14 0.20 -13.53 15 12 H 0.43 8.39 8.96 -40.82 -0.37 8.03 15 13 C 0.50 12.67 8.44 -14.98 -0.13 12.54 15 14 O -0.60 -16.59 18.08 4.88 0.09 -16.50 15 15 C -0.50 -12.02 5.71 -102.81 -0.59 -12.61 15 16 C 0.05 1.08 5.85 -29.03 -0.17 0.91 15 17 C -0.01 -0.18 5.15 -104.32 -0.54 -0.72 15 18 C -0.17 -3.02 9.82 -39.44 -0.39 -3.41 15 19 C 0.09 1.46 11.18 -17.55 -0.20 1.27 15 20 N -0.50 -9.22 10.36 -13.25 -0.14 -9.36 15 21 C 0.08 1.50 11.18 -17.55 -0.20 1.30 15 22 C -0.17 -3.15 9.82 -39.44 -0.39 -3.54 15 23 H 0.30 5.87 8.29 -40.82 -0.34 5.53 15 24 H 0.06 1.25 8.10 -51.93 -0.42 0.82 15 25 H 0.07 1.27 7.58 -51.92 -0.39 0.87 15 26 H 0.13 2.20 8.06 -52.48 -0.42 1.78 15 27 H 0.15 2.02 8.06 -52.48 -0.42 1.60 15 28 H 0.15 2.11 8.06 -52.49 -0.42 1.68 15 29 H 0.13 2.51 8.06 -52.49 -0.42 2.09 15 LS Contribution 268.98 15.07 4.05 4.05 Total: -1.00 -29.21 268.98 -5.70 -34.90 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -2.39 Total: 12.76 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: -3.29 Total: -6.37 kcal Atomic # 7 Polarization: -39.84 SS G_CDS: 0.73 Total: -39.11 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: 0.24 Total: -16.67 kcal Atomic # 14 Polarization: 15.47 SS G_CDS: -5.03 Total: 10.44 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -29.21 -5.70 -34.90 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259817440.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.181 kcal (2) G-P(sol) polarization free energy of solvation -29.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds