Wall clock time and date at job start Mon Mar 30 2020 03:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30514 * 1 3 3 Si 1.86803 * 120.00032 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00005 * 3 2 1 5 5 H 1.48501 * 109.47062 * 29.99956 * 3 2 1 6 6 H 1.48495 * 109.46833 * 149.99578 * 3 2 1 7 7 C 1.40467 * 119.99901 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99617 * 179.97438 * 7 2 1 9 9 C 1.40458 * 119.99992 * 0.28017 * 7 2 1 10 10 O 1.34685 * 126.74155 * 359.40712 * 9 7 2 11 11 N 1.20836 * 112.06849 * 179.78605 * 10 9 7 12 12 H 0.96994 * 124.17235 * 180.21685 * 11 10 9 13 13 C 1.34709 * 111.65901 * 0.49251 * 11 10 9 14 14 O 1.22042 * 126.96551 * 179.71576 * 13 11 10 15 15 C 1.39586 * 126.73942 * 179.72546 * 9 7 2 16 16 C 1.50697 * 128.15995 * 359.95642 * 15 9 7 17 17 C 1.50704 * 109.46621 * 95.00089 * 16 15 9 18 18 C 1.38645 * 120.79291 * 269.72139 * 17 16 15 19 19 C 1.38207 * 119.16207 * 179.80463 * 18 17 16 20 20 N 1.31867 * 120.76174 * 0.48042 * 19 18 17 21 21 C 1.31867 * 121.72924 * 359.74881 * 20 19 18 22 22 C 1.38203 * 120.76348 * 0.02562 * 21 20 19 23 23 H 0.97005 * 119.99934 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.47605 * 215.00640 * 16 15 9 25 25 H 1.09008 * 109.47100 * 335.00993 * 16 15 9 26 26 H 1.08004 * 120.41945 * 0.02562 * 18 17 16 27 27 H 1.08007 * 119.61694 * 180.20769 * 19 18 17 28 28 H 1.08000 * 119.61728 * 179.97438 * 21 20 19 29 29 H 1.08001 * 120.41719 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3051 0.0000 0.0000 3 14 2.2392 1.6178 0.0000 4 1 2.4867 2.0464 -1.4001 5 1 1.4366 2.6527 0.7000 6 1 3.5366 1.4401 0.7001 7 6 2.0075 -1.2165 0.0005 8 1 3.0875 -1.2164 0.0001 9 6 1.3052 -2.4329 -0.0049 10 8 -0.0324 -2.5910 0.0003 11 7 -0.3518 -3.7563 -0.0107 12 1 -1.2698 -4.0696 -0.0124 13 6 0.7242 -4.5668 -0.0143 14 8 0.7237 -5.7872 -0.0200 15 6 1.8564 -3.7153 -0.0104 16 6 3.3127 -4.1028 -0.0129 17 6 3.7670 -4.3574 1.4012 18 6 4.2915 -3.3324 2.1737 19 6 4.6940 -3.6027 3.4679 20 7 4.5924 -4.8197 3.9656 21 6 4.1030 -5.8194 3.2586 22 6 3.6761 -5.6236 1.9588 23 1 -0.4850 0.8401 -0.0004 24 1 3.4471 -5.0072 -0.6062 25 1 3.9031 -3.2942 -0.4442 26 1 4.3810 -2.3345 1.7703 27 1 5.1004 -2.8090 4.0773 28 1 4.0357 -6.8027 3.7001 29 1 3.2765 -6.4465 1.3847 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259817440.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:29 Heat of formation + Delta-G solvation = 16.644686 kcal Electronic energy + Delta-G solvation = -17320.982470 eV Core-core repulsion = 14404.358180 eV Total energy + Delta-G solvation = -2916.624290 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -44.85409 -40.86924 -38.44485 -36.42721 -35.21937 -32.85292 -31.99409 -31.94673 -29.10001 -27.76452 -24.22282 -23.51434 -22.84626 -21.83444 -19.54229 -19.08615 -18.05346 -17.28306 -17.18342 -17.02427 -16.33390 -15.93133 -15.46717 -14.79816 -14.71077 -14.40717 -14.22976 -13.74063 -13.53806 -13.38537 -13.05810 -12.96309 -12.81499 -12.07949 -11.96287 -11.52218 -10.46617 -10.44259 -10.27768 -10.17974 -9.94239 -8.99741 -8.95293 -6.95738 0.35078 0.48019 0.97278 1.44621 1.61992 1.68665 2.04628 2.15815 2.36501 2.97682 3.06398 3.48128 3.68453 4.00152 4.11551 4.36443 4.41302 4.51185 4.83800 4.89672 4.94385 4.99973 5.12724 5.26852 5.28898 5.45542 5.75068 5.85594 5.94347 6.06283 6.26262 6.43051 7.11828 7.44363 7.93720 8.02464 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.019585 B = 0.009183 C = 0.006765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.307936 B = 3048.424867 C = 4138.242937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.030 3.970 3 Si 1.005 2.995 4 H -0.257 1.257 5 H -0.268 1.268 6 H -0.240 1.240 7 C -0.412 4.412 8 H 0.138 0.862 9 C 0.231 3.769 10 O -0.023 6.023 11 N -0.587 5.587 12 H 0.446 0.554 13 C 0.474 3.526 14 O -0.637 6.637 15 C -0.511 4.511 16 C 0.055 3.945 17 C -0.027 4.027 18 C -0.172 4.172 19 C 0.088 3.912 20 N -0.516 5.516 21 C 0.086 3.914 22 C -0.182 4.182 23 H 0.306 0.694 24 H 0.051 0.949 25 H 0.083 0.917 26 H 0.148 0.852 27 H 0.182 0.818 28 H 0.172 0.828 29 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.623 4.444 1.851 7.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.194 4.194 3 Si 0.822 3.178 4 H -0.181 1.181 5 H -0.192 1.192 6 H -0.162 1.162 7 C -0.439 4.439 8 H 0.155 0.845 9 C 0.177 3.823 10 O -0.035 6.035 11 N -0.278 5.278 12 H 0.295 0.705 13 C 0.284 3.716 14 O -0.531 6.531 15 C -0.519 4.519 16 C 0.017 3.983 17 C -0.035 4.035 18 C -0.191 4.191 19 C -0.068 4.068 20 N -0.226 5.226 21 C -0.070 4.070 22 C -0.202 4.202 23 H 0.118 0.882 24 H 0.070 0.930 25 H 0.101 0.899 26 H 0.166 0.834 27 H 0.199 0.801 28 H 0.189 0.811 29 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 5.486 3.928 2.705 7.269 hybrid contribution -1.178 0.224 -1.049 1.593 sum 4.308 4.151 1.656 6.208 Atomic orbital electron populations 1.69622 1.09742 1.33095 1.28306 1.27368 0.95789 1.05942 0.90262 0.84806 0.79328 0.73439 0.80179 1.18117 1.19205 1.16246 1.19747 0.96171 0.86516 1.41515 0.84457 1.20545 0.78154 0.95394 0.88202 1.84352 1.25477 1.09414 1.84246 1.42963 1.10219 0.97312 1.77352 0.70513 1.18152 0.85342 0.87566 0.80543 1.90684 1.86836 1.12814 1.62778 1.20370 0.95106 0.91761 1.44658 1.18014 0.89561 1.00132 0.90557 1.20812 0.91484 0.93237 0.97974 1.22258 1.00564 1.00449 0.95843 1.23146 0.96020 0.94317 0.93336 1.67668 1.15862 1.01120 1.37946 1.22953 0.94397 0.98845 0.90793 1.22138 1.02172 0.98223 0.97711 0.88220 0.93048 0.89871 0.83401 0.80144 0.81063 0.86118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -34.11 12.06 21.91 0.26 -33.85 15 2 C 0.03 1.19 5.50 85.43 0.47 1.66 15 3 Si 1.00 29.05 29.56 68.60 2.03 31.08 15 4 H -0.26 -7.25 7.11 99.48 0.71 -6.54 15 5 H -0.27 -7.57 7.11 99.48 0.71 -6.87 15 6 H -0.24 -6.43 7.11 99.48 0.71 -5.72 15 7 C -0.41 -17.83 9.19 23.35 0.21 -17.62 15 8 H 0.14 5.25 7.41 -2.91 -0.02 5.23 15 9 C 0.23 11.28 6.89 23.14 0.16 11.43 15 10 O -0.02 -1.16 9.56 65.46 0.63 -0.54 15 11 N -0.59 -27.74 6.72 -179.85 -1.21 -28.95 15 12 H 0.45 17.74 8.96 -92.71 -0.83 16.91 15 13 C 0.47 24.90 8.44 85.10 0.72 25.62 15 14 O -0.64 -36.23 18.08 -5.45 -0.10 -36.33 15 15 C -0.51 -25.02 5.71 -18.69 -0.11 -25.13 15 16 C 0.06 2.30 5.85 29.10 0.17 2.47 15 17 C -0.03 -1.06 5.15 -19.67 -0.10 -1.16 15 18 C -0.17 -5.86 9.82 22.36 0.22 -5.64 15 19 C 0.09 2.78 11.18 84.68 0.95 3.72 15 20 N -0.52 -17.77 10.36 -195.84 -2.03 -19.79 15 21 C 0.09 2.93 11.18 84.68 0.95 3.88 15 22 C -0.18 -6.99 9.82 22.36 0.22 -6.77 15 23 H 0.31 11.72 8.29 -92.70 -0.77 10.96 15 24 H 0.05 2.18 8.10 -2.39 -0.02 2.16 15 25 H 0.08 3.09 7.58 -2.38 -0.02 3.07 15 26 H 0.15 4.50 8.06 -2.91 -0.02 4.47 15 27 H 0.18 4.31 8.06 -2.91 -0.02 4.28 15 28 H 0.17 4.73 8.06 -2.91 -0.02 4.71 15 29 H 0.12 4.79 8.06 -2.91 -0.02 4.77 15 Total: -1.00 -62.29 268.98 3.81 -58.48 By element: Atomic # 1 Polarization: 37.04 SS G_CDS: 0.37 Total: 37.41 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: 3.86 Total: -7.52 kcal Atomic # 7 Polarization: -79.61 SS G_CDS: -2.97 Total: -82.59 kcal Atomic # 8 Polarization: -37.39 SS G_CDS: 0.53 Total: -36.86 kcal Atomic # 14 Polarization: 29.05 SS G_CDS: 2.03 Total: 31.08 kcal Total: -62.29 3.81 -58.48 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259817440.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.124 kcal (2) G-P(sol) polarization free energy of solvation -62.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds