Wall clock time and date at job start Mon Mar 30 2020 04:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86799 * 120.00384 * 2 1 4 4 H 1.48501 * 109.47118 * 240.00036 * 3 2 1 5 5 H 1.48500 * 109.46843 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47495 * 119.99424 * 3 2 1 7 7 C 1.38814 * 119.99708 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00026 * 179.97438 * 7 2 1 9 9 N 1.36942 * 120.00059 * 0.02562 * 7 2 1 10 10 C 1.46737 * 126.84153 * 359.95736 * 9 7 2 11 11 C 1.50809 * 107.50557 * 180.02562 * 10 9 7 12 12 C 1.40250 * 142.76257 * 179.97438 * 11 10 9 13 13 N 1.30742 * 108.38320 * 179.75477 * 12 11 10 14 14 N 1.40050 * 108.26248 * 0.37969 * 13 12 11 15 15 C 1.39142 * 126.12568 * 179.87794 * 14 13 12 16 16 N 1.30868 * 125.68608 * 359.69429 * 15 14 13 17 17 C 1.34525 * 108.63675 * 179.97438 * 16 15 14 18 18 C 1.34267 * 107.77113 * 0.02562 * 17 16 15 19 19 O 1.34185 * 125.68613 * 179.66346 * 15 14 13 20 20 C 1.34960 * 109.30204 * 359.97438 * 11 10 9 21 21 C 1.46755 * 126.84315 * 179.97438 * 9 7 2 22 22 H 0.97003 * 119.99698 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.84375 * 299.52125 * 10 9 7 24 24 H 1.08997 * 109.85222 * 60.43824 * 10 9 7 25 25 H 1.08004 * 125.80636 * 359.96467 * 12 11 10 26 26 H 1.08001 * 126.11402 * 179.97438 * 17 16 15 27 27 H 1.07991 * 126.38648 * 179.97438 * 18 17 16 28 28 H 1.09005 * 109.84397 * 60.48500 * 21 9 7 29 29 H 1.08991 * 109.94161 * 299.49980 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1314 -2.5629 0.0009 11 6 -0.4106 -4.0449 0.0014 12 6 -1.4513 -4.9851 0.0023 13 7 -0.9255 -6.1821 -0.0031 14 7 0.4687 -6.0491 0.0012 15 6 1.3920 -7.0900 0.0001 16 7 1.1035 -8.3665 0.0005 17 6 2.2520 -9.0669 -0.0015 18 6 3.2676 -8.1886 -0.0026 19 8 2.7268 -6.9524 -0.0022 20 6 0.7586 -4.7191 0.0008 21 6 1.9025 -3.7375 0.0005 22 1 -0.4850 0.8401 -0.0004 23 1 -0.5587 -2.1055 0.8932 24 1 -0.5594 -2.1046 -0.8907 25 1 -2.5073 -4.7588 0.0034 26 1 2.3412 -10.1432 -0.0013 27 1 4.3208 -8.4271 -0.0038 28 1 2.5125 -3.8791 0.8928 29 1 2.5126 -3.8809 -0.8912 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259839496.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:27 Heat of formation + Delta-G solvation = 152.375576 kcal Electronic energy + Delta-G solvation = -17126.051955 eV Core-core repulsion = 14247.606149 eV Total energy + Delta-G solvation = -2878.445806 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.57066 -42.84337 -38.28258 -36.04278 -34.52365 -34.18876 -31.06241 -30.33687 -28.60441 -27.05857 -24.70368 -23.85876 -23.20551 -21.63679 -20.99211 -19.27459 -18.58009 -18.30392 -17.46207 -16.76509 -16.68927 -15.84239 -15.63041 -15.25015 -15.01183 -14.74683 -14.21600 -13.57302 -13.27530 -13.01212 -12.76649 -12.73249 -12.65696 -12.26559 -11.99227 -11.86100 -11.77854 -11.48331 -11.00289 -10.04541 -9.34457 -8.88769 -7.91360 -5.30663 -0.31843 0.06145 0.85425 1.51636 1.51776 1.55499 1.61542 1.67819 1.88129 2.46697 2.93363 3.26732 3.31979 3.42637 3.82874 3.90539 4.01695 4.26626 4.42492 4.55209 4.57036 4.73123 4.94621 5.10031 5.27017 5.34519 5.45097 5.61328 5.66024 6.02111 6.13496 6.63910 6.99108 7.60993 8.27799 9.21552 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.039067 B = 0.005913 C = 0.005155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.538827 B = 4734.060680 C = 5430.105017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.055 4.055 3 Si 0.989 3.011 4 H -0.275 1.275 5 H -0.293 1.293 6 H -0.274 1.274 7 C -0.250 4.250 8 H 0.095 0.905 9 N -0.616 5.616 10 C 0.258 3.742 11 C -0.243 4.243 12 C 0.110 3.890 13 N -0.261 5.261 14 N -0.291 5.291 15 C 0.400 3.600 16 N -0.490 5.490 17 C -0.039 4.039 18 C -0.051 4.051 19 O -0.216 6.216 20 C 0.038 3.962 21 C 0.221 3.779 22 H 0.254 0.746 23 H 0.035 0.965 24 H 0.036 0.964 25 H 0.244 0.756 26 H 0.233 0.767 27 H 0.279 0.721 28 H 0.053 0.947 29 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.175 -14.176 0.001 15.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.249 4.249 3 Si 0.816 3.184 4 H -0.200 1.200 5 H -0.219 1.219 6 H -0.200 1.200 7 C -0.378 4.378 8 H 0.113 0.887 9 N -0.344 5.344 10 C 0.132 3.868 11 C -0.254 4.254 12 C -0.079 4.079 13 N -0.079 5.079 14 N -0.074 5.074 15 C 0.106 3.894 16 N -0.226 5.226 17 C -0.178 4.178 18 C -0.121 4.121 19 O -0.100 6.100 20 C -0.084 4.084 21 C 0.094 3.906 22 H 0.063 0.937 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.260 0.740 26 H 0.249 0.751 27 H 0.295 0.705 28 H 0.070 0.930 29 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.453 -15.449 -0.002 16.078 hybrid contribution 0.939 1.948 -0.001 2.163 sum 5.393 -13.501 -0.003 14.538 Atomic orbital electron populations 1.70111 1.06379 1.26222 1.56608 1.25739 0.96739 1.01140 1.01290 0.85006 0.77077 0.77907 0.78388 1.20031 1.21858 1.20019 1.19337 0.91259 0.81806 1.45357 0.88693 1.44270 1.02008 1.00015 1.88074 1.18742 0.84364 0.84185 0.99472 1.21922 0.92957 0.98511 1.11991 1.24332 1.01789 0.86551 0.95229 1.77782 0.81690 1.22214 1.26165 1.43652 1.03620 0.99665 1.60500 1.20545 0.78392 0.86134 1.04320 1.70742 1.31690 0.99301 1.20841 1.24100 0.85304 1.03495 1.04881 1.26195 1.02732 0.77574 1.05555 1.84499 1.18285 1.36045 1.71170 1.21973 1.01412 0.82990 1.02016 1.19166 0.89455 0.81830 1.00183 0.93690 0.94663 0.94632 0.74045 0.75053 0.70527 0.92951 0.92948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.59 10.49 21.65 0.23 -54.36 15 2 C -0.05 -3.00 5.49 84.86 0.47 -2.54 15 3 Si 0.99 43.70 29.55 68.60 2.03 45.72 15 4 H -0.27 -11.66 7.11 99.48 0.71 -10.96 15 5 H -0.29 -13.01 7.11 99.48 0.71 -12.31 15 6 H -0.27 -11.66 7.11 99.48 0.71 -10.95 15 7 C -0.25 -13.61 10.34 84.03 0.87 -12.74 15 8 H 0.10 4.81 7.83 -2.91 -0.02 4.79 15 9 N -0.62 -31.98 3.42 -709.17 -2.43 -34.40 15 10 C 0.26 12.94 5.42 85.62 0.46 13.40 15 11 C -0.24 -10.21 6.99 -20.09 -0.14 -10.35 15 12 C 0.11 3.80 12.02 85.34 1.03 4.82 15 13 N -0.26 -9.87 12.51 -56.82 -0.71 -10.58 15 14 N -0.29 -11.49 3.79 -295.33 -1.12 -12.61 15 15 C 0.40 14.11 8.96 178.80 1.60 15.71 15 16 N -0.49 -15.70 11.33 -313.37 -3.55 -19.24 15 17 C -0.04 -0.79 11.88 83.37 0.99 0.20 15 18 C -0.05 -0.91 12.17 66.91 0.81 -0.09 15 19 O -0.22 -6.34 10.70 -7.68 -0.08 -6.43 15 20 C 0.04 1.60 7.57 41.15 0.31 1.91 15 21 C 0.22 9.63 7.28 85.60 0.62 10.26 15 22 H 0.25 14.17 8.31 -92.71 -0.77 13.40 15 23 H 0.04 1.93 7.51 -2.39 -0.02 1.91 15 24 H 0.04 1.95 7.51 -2.39 -0.02 1.93 15 25 H 0.24 5.82 8.06 -2.91 -0.02 5.79 15 26 H 0.23 2.42 8.06 -2.91 -0.02 2.40 15 27 H 0.28 1.40 8.06 -2.92 -0.02 1.37 15 28 H 0.05 2.20 8.14 -2.38 -0.02 2.18 15 29 H 0.05 2.20 8.14 -2.39 -0.02 2.18 15 Total: -1.00 -72.16 262.84 2.57 -69.58 By element: Atomic # 1 Polarization: 0.56 SS G_CDS: 1.18 Total: 1.74 kcal Atomic # 6 Polarization: 13.56 SS G_CDS: 7.02 Total: 20.58 kcal Atomic # 7 Polarization: -123.62 SS G_CDS: -7.58 Total: -131.20 kcal Atomic # 8 Polarization: -6.34 SS G_CDS: -0.08 Total: -6.43 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Total: -72.16 2.57 -69.58 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259839496.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 221.956 kcal (2) G-P(sol) polarization free energy of solvation -72.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 152.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds