Wall clock time and date at job start Mon Mar 30 2020 04:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35814 * 117.00163 * 2 1 4 4 C 1.38907 * 119.92731 * 180.02562 * 3 2 1 5 5 C 1.37819 * 120.07768 * 179.97438 * 4 3 2 6 6 C 1.39542 * 119.92043 * 359.97438 * 5 4 3 7 7 C 1.48093 * 120.07038 * 179.97438 * 6 5 4 8 8 N 1.31400 * 128.77182 * 325.02391 * 7 6 5 9 9 O 1.20783 * 109.72532 * 179.97438 * 8 7 6 10 10 N 1.20865 * 116.40553 * 0.02562 * 9 8 7 11 11 C 1.32705 * 109.12759 * 359.97438 * 10 9 8 12 12 C 1.41323 * 128.86304 * 179.97438 * 11 10 9 13 13 H 1.08000 * 120.00478 * 179.97438 * 12 11 10 14 14 C 1.40129 * 120.00236 * 359.97438 * 12 11 10 15 15 N 1.30686 * 120.00294 * 180.02562 * 14 12 11 16 16 Si 1.86797 * 119.99618 * 359.97438 * 14 12 11 17 17 H 1.48503 * 109.47058 * 89.99835 * 16 14 12 18 18 H 1.48497 * 109.47426 * 209.99811 * 16 14 12 19 19 H 1.48499 * 109.47380 * 330.00234 * 16 14 12 20 20 C 1.39535 * 119.85106 * 0.27506 * 6 5 4 21 21 C 1.37817 * 119.92379 * 359.46498 * 20 6 5 22 22 H 1.09003 * 109.47156 * 299.99561 * 1 2 3 23 23 H 1.08996 * 109.47040 * 60.00048 * 1 2 3 24 24 H 1.08999 * 109.46900 * 179.97438 * 1 2 3 25 25 H 1.08001 * 119.96188 * 359.97438 * 4 3 2 26 26 H 1.08003 * 120.03965 * 179.97438 * 5 4 3 27 27 H 0.97004 * 120.00029 * 180.02562 * 15 14 12 28 28 H 1.08000 * 120.03689 * 179.70398 * 20 6 5 29 29 H 1.08003 * 119.96140 * 180.23566 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2101 0.0000 4 6 3.4329 1.2810 -0.0005 5 6 4.0618 2.5073 -0.0011 6 6 3.3033 3.6786 -0.0016 7 6 3.9757 4.9981 -0.0016 8 7 5.0970 5.3502 0.5860 9 8 5.3279 6.5139 0.3595 10 7 4.5233 7.0977 -0.3280 11 6 3.5520 6.2595 -0.6674 12 6 2.4067 6.5032 -1.4587 13 1 1.7009 5.7076 -1.6466 14 6 2.1867 7.7771 -1.9995 15 7 1.1274 8.0025 -2.7308 16 14 3.4071 9.1533 -1.6739 17 1 4.4464 9.1546 -2.7347 18 1 2.6956 10.4567 -1.6765 19 1 4.0497 8.9427 -0.3518 20 6 1.9100 3.6037 0.0042 21 6 1.2875 2.3741 -0.0007 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 4.0193 0.3741 -0.0005 26 1 5.1405 2.5617 -0.0011 27 1 0.9753 8.8843 -3.1055 28 1 1.3200 4.5083 0.0086 29 1 0.2091 2.3155 -0.0001 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259839501.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:14 Heat of formation + Delta-G solvation = 84.983707 kcal Electronic energy + Delta-G solvation = -16925.860119 eV Core-core repulsion = 14012.199231 eV Total energy + Delta-G solvation = -2913.660887 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -44.62658 -39.82372 -37.27401 -34.40643 -33.02782 -32.38512 -30.84439 -29.55703 -27.33397 -27.02590 -23.19775 -22.41911 -21.36802 -20.49675 -17.97261 -17.49152 -17.11044 -16.93100 -15.85692 -15.64035 -15.26430 -14.49216 -14.03599 -13.51615 -13.36741 -12.98841 -12.54834 -12.44313 -11.98149 -11.62863 -11.43945 -11.24359 -11.09164 -10.80181 -10.71808 -10.23468 -9.84304 -9.58851 -8.95694 -8.72149 -8.49098 -7.62255 -7.06684 -4.92849 1.47077 1.68198 2.76956 3.00007 3.22218 3.38121 3.51056 3.55552 4.15434 4.21245 4.78194 4.94676 4.99053 5.11601 5.15252 5.21021 5.43472 5.45241 5.71541 5.74708 5.78695 5.95034 6.13802 6.33580 6.59787 6.70198 6.79373 7.00119 7.02963 7.10316 7.56619 7.99243 8.07765 8.48323 9.90507 10.44904 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.029857 B = 0.006736 C = 0.005618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.592539 B = 4155.888200 C = 4982.614995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.322 6.322 3 C 0.115 3.885 4 C -0.153 4.153 5 C -0.067 4.067 6 C -0.009 4.009 7 C -0.046 4.046 8 N -0.372 5.372 9 O 0.272 5.728 10 N -0.497 5.497 11 C 0.152 3.848 12 C -0.403 4.403 13 H 0.106 0.894 14 C 0.093 3.907 15 N -0.797 5.797 16 Si 0.887 3.113 17 H -0.269 1.269 18 H -0.295 1.295 19 H -0.180 1.180 20 C -0.055 4.055 21 C -0.204 4.204 22 H 0.054 0.946 23 H 0.056 0.944 24 H 0.095 0.905 25 H 0.128 0.872 26 H 0.128 0.872 27 H 0.291 0.709 28 H 0.139 0.861 29 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.149 -9.826 3.388 10.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.235 6.235 3 C 0.070 3.930 4 C -0.172 4.172 5 C -0.087 4.087 6 C -0.011 4.011 7 C -0.208 4.208 8 N -0.092 5.092 9 O 0.072 5.928 10 N -0.259 5.259 11 C 0.008 3.992 12 C -0.441 4.441 13 H 0.124 0.876 14 C -0.131 4.131 15 N -0.423 5.423 16 Si 0.712 3.288 17 H -0.194 1.194 18 H -0.223 1.223 19 H -0.102 1.102 20 C -0.074 4.074 21 C -0.223 4.223 22 H 0.073 0.927 23 H 0.074 0.926 24 H 0.114 0.886 25 H 0.146 0.854 26 H 0.146 0.854 27 H 0.101 0.899 28 H 0.156 0.844 29 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.117 -9.473 3.809 10.271 hybrid contribution -0.842 0.350 -0.610 1.097 sum -1.958 -9.123 3.199 9.864 Atomic orbital electron populations 1.23014 0.78761 1.03453 1.01521 1.85999 1.21123 1.27328 1.89075 1.19072 0.92280 0.83908 0.97768 1.20207 0.91162 0.98140 1.07657 1.20990 0.99809 0.90517 0.97340 1.17406 0.92234 0.88665 1.02745 1.23704 0.95335 0.96103 1.05610 1.74598 1.16440 0.98945 1.19252 1.84612 1.41756 1.14604 1.51851 1.76127 1.06984 1.19092 1.23720 1.22880 0.95167 0.85999 0.95132 1.18632 1.03111 0.97974 1.24367 0.87611 1.26080 0.95685 1.00233 0.91087 1.69501 1.24780 1.24910 1.23140 0.86642 0.79818 0.76457 0.85852 1.19402 1.22278 1.10250 1.21143 0.93549 0.97656 0.95084 1.21106 0.99834 0.91970 1.09403 0.92729 0.92583 0.88629 0.85404 0.85370 0.89861 0.84368 0.85420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.26 15 2 O -0.32 -4.43 10.49 -19.16 -0.20 -4.63 15 3 C 0.11 1.78 6.69 -39.09 -0.26 1.52 15 4 C -0.15 -2.40 9.97 -39.49 -0.39 -2.79 15 5 C -0.07 -1.19 9.77 -39.25 -0.38 -1.57 15 6 C -0.01 -0.18 5.88 -104.88 -0.62 -0.80 15 7 C -0.05 -1.07 7.21 -79.64 -0.57 -1.65 15 8 N -0.37 -8.70 12.24 33.97 0.42 -8.29 15 9 O 0.27 6.57 11.62 27.29 0.32 6.89 15 10 N -0.50 -12.66 7.18 32.90 0.24 -12.43 15 11 C 0.15 3.87 6.86 -81.95 -0.56 3.31 15 12 C -0.40 -10.50 9.47 -37.70 -0.36 -10.86 15 13 H 0.11 2.75 6.70 -52.49 -0.35 2.40 15 14 C 0.09 2.38 5.52 -17.33 -0.10 2.28 15 15 N -0.80 -20.48 13.92 55.56 0.77 -19.70 15 16 Si 0.89 20.63 26.73 -169.99 -4.54 16.08 15 17 H -0.27 -6.38 7.11 56.52 0.40 -5.98 15 18 H -0.30 -6.61 7.11 56.52 0.40 -6.21 15 19 H -0.18 -4.28 5.21 56.52 0.29 -3.98 15 20 C -0.05 -1.02 9.05 -39.25 -0.36 -1.37 15 21 C -0.20 -3.22 9.02 -39.49 -0.36 -3.58 15 22 H 0.05 0.48 7.65 -51.93 -0.40 0.09 15 23 H 0.06 0.52 7.65 -51.93 -0.40 0.12 15 24 H 0.10 0.68 8.14 -51.93 -0.42 0.25 15 25 H 0.13 1.70 8.06 -52.49 -0.42 1.28 15 26 H 0.13 2.14 8.06 -52.48 -0.42 1.72 15 27 H 0.29 6.82 8.29 -40.82 -0.34 6.48 15 28 H 0.14 2.65 6.79 -52.49 -0.36 2.30 15 29 H 0.13 1.66 6.28 -52.48 -0.33 1.33 15 LS Contribution 258.46 15.07 3.89 3.89 Total: -1.00 -28.21 258.46 -4.41 -32.62 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: -2.34 Total: -0.20 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: -2.96 Total: -14.24 kcal Atomic # 7 Polarization: -41.84 SS G_CDS: 1.43 Total: -40.42 kcal Atomic # 8 Polarization: 2.14 SS G_CDS: 0.12 Total: 2.26 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.54 Total: 16.08 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -28.21 -4.41 -32.62 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259839501.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.608 kcal (2) G-P(sol) polarization free energy of solvation -28.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds