Wall clock time and date at job start Mon Mar 30 2020 04:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35814 * 117.00163 * 2 1 4 4 C 1.38907 * 119.92731 * 180.02562 * 3 2 1 5 5 C 1.37819 * 120.07768 * 179.97438 * 4 3 2 6 6 C 1.39542 * 119.92043 * 359.97438 * 5 4 3 7 7 C 1.48093 * 120.07038 * 179.97438 * 6 5 4 8 8 N 1.31400 * 128.77182 * 325.02391 * 7 6 5 9 9 O 1.20783 * 109.72532 * 179.97438 * 8 7 6 10 10 N 1.20865 * 116.40553 * 0.02562 * 9 8 7 11 11 C 1.32705 * 109.12759 * 359.97438 * 10 9 8 12 12 C 1.41323 * 128.86304 * 179.97438 * 11 10 9 13 13 H 1.08000 * 120.00478 * 179.97438 * 12 11 10 14 14 C 1.40129 * 120.00236 * 359.97438 * 12 11 10 15 15 N 1.30686 * 120.00294 * 180.02562 * 14 12 11 16 16 Si 1.86797 * 119.99618 * 359.97438 * 14 12 11 17 17 H 1.48503 * 109.47058 * 89.99835 * 16 14 12 18 18 H 1.48497 * 109.47426 * 209.99811 * 16 14 12 19 19 H 1.48499 * 109.47380 * 330.00234 * 16 14 12 20 20 C 1.39535 * 119.85106 * 0.27506 * 6 5 4 21 21 C 1.37817 * 119.92379 * 359.46498 * 20 6 5 22 22 H 1.09003 * 109.47156 * 299.99561 * 1 2 3 23 23 H 1.08996 * 109.47040 * 60.00048 * 1 2 3 24 24 H 1.08999 * 109.46900 * 179.97438 * 1 2 3 25 25 H 1.08001 * 119.96188 * 359.97438 * 4 3 2 26 26 H 1.08003 * 120.03965 * 179.97438 * 5 4 3 27 27 H 0.97004 * 120.00029 * 180.02562 * 15 14 12 28 28 H 1.08000 * 120.03689 * 179.70398 * 20 6 5 29 29 H 1.08003 * 119.96140 * 180.23566 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2101 0.0000 4 6 3.4329 1.2810 -0.0005 5 6 4.0618 2.5073 -0.0011 6 6 3.3033 3.6786 -0.0016 7 6 3.9757 4.9981 -0.0016 8 7 5.0970 5.3502 0.5860 9 8 5.3279 6.5139 0.3595 10 7 4.5233 7.0977 -0.3280 11 6 3.5520 6.2595 -0.6674 12 6 2.4067 6.5032 -1.4587 13 1 1.7009 5.7076 -1.6466 14 6 2.1867 7.7771 -1.9995 15 7 1.1274 8.0025 -2.7308 16 14 3.4071 9.1533 -1.6739 17 1 4.4464 9.1546 -2.7347 18 1 2.6956 10.4567 -1.6765 19 1 4.0497 8.9427 -0.3518 20 6 1.9100 3.6037 0.0042 21 6 1.2875 2.3741 -0.0007 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 4.0193 0.3741 -0.0005 26 1 5.1405 2.5617 -0.0011 27 1 0.9753 8.8843 -3.1055 28 1 1.3200 4.5083 0.0086 29 1 0.2091 2.3155 -0.0001 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259839501.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:14 Heat of formation + Delta-G solvation = 68.409691 kcal Electronic energy + Delta-G solvation = -16926.578822 eV Core-core repulsion = 14012.199231 eV Total energy + Delta-G solvation = -2914.379591 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -46.51899 -41.01905 -38.53071 -36.32263 -34.80276 -34.31445 -32.15149 -30.96949 -29.03532 -28.18527 -24.78132 -23.87888 -23.07945 -22.08171 -19.43036 -19.14697 -18.99836 -18.67268 -17.13672 -16.89214 -16.61414 -16.19830 -15.45534 -15.10734 -14.68078 -14.39593 -14.26914 -13.83167 -13.38907 -13.29276 -12.93429 -12.82747 -12.74738 -12.41481 -12.17814 -11.76956 -11.67288 -11.33993 -10.82945 -10.40300 -10.02654 -9.03080 -9.01140 -6.90734 0.01541 0.36722 0.86404 1.23438 1.34214 1.62180 1.67918 2.33165 2.36020 2.74951 2.97370 3.09743 3.56939 3.83936 3.87379 3.94271 4.31706 4.38374 4.44703 4.48730 4.54151 4.63200 4.78224 4.84302 5.07438 5.11636 5.26136 5.38757 5.64056 5.68568 5.97241 6.11950 6.42038 6.50744 7.99606 8.54114 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.029857 B = 0.006736 C = 0.005618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.592539 B = 4155.888200 C = 4982.614995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.326 6.326 3 C 0.128 3.872 4 C -0.151 4.151 5 C -0.065 4.065 6 C -0.051 4.051 7 C -0.031 4.031 8 N -0.374 5.374 9 O 0.259 5.741 10 N -0.504 5.504 11 C 0.134 3.866 12 C -0.421 4.421 13 H 0.096 0.904 14 C 0.065 3.935 15 N -0.818 5.818 16 Si 0.932 3.068 17 H -0.276 1.276 18 H -0.279 1.279 19 H -0.192 1.192 20 C -0.062 4.062 21 C -0.201 4.201 22 H 0.065 0.935 23 H 0.062 0.938 24 H 0.125 0.875 25 H 0.156 0.844 26 H 0.133 0.867 27 H 0.301 0.699 28 H 0.123 0.877 29 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.768 -11.622 3.639 12.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.239 6.239 3 C 0.082 3.918 4 C -0.169 4.169 5 C -0.084 4.084 6 C -0.052 4.052 7 C -0.193 4.193 8 N -0.097 5.097 9 O 0.064 5.936 10 N -0.266 5.266 11 C -0.011 4.011 12 C -0.458 4.458 13 H 0.114 0.886 14 C -0.156 4.156 15 N -0.445 5.445 16 Si 0.756 3.244 17 H -0.202 1.202 18 H -0.205 1.205 19 H -0.116 1.116 20 C -0.082 4.082 21 C -0.219 4.219 22 H 0.083 0.917 23 H 0.080 0.920 24 H 0.143 0.857 25 H 0.174 0.826 26 H 0.151 0.849 27 H 0.112 0.888 28 H 0.141 0.859 29 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -1.734 -11.245 4.065 12.082 hybrid contribution -0.750 0.664 -0.654 1.196 sum -2.483 -10.581 3.412 11.391 Atomic orbital electron populations 1.23395 0.76396 1.05804 1.02317 1.86017 1.23504 1.26037 1.88366 1.19202 0.92461 0.84536 0.95624 1.20476 0.91720 0.98269 1.06461 1.21054 1.00045 0.90414 0.96870 1.17556 0.93104 0.88026 1.06557 1.24198 0.94712 0.96857 1.03577 1.74580 1.16852 0.98600 1.19633 1.84582 1.41729 1.14989 1.52339 1.76081 1.07151 1.19599 1.23720 1.23082 0.95246 0.87217 0.95553 1.18655 1.03516 0.98244 1.25433 0.88563 1.26557 0.96662 1.01321 0.91052 1.69490 1.25351 1.25979 1.23672 0.85966 0.78293 0.75569 0.84557 1.20157 1.20531 1.11582 1.21091 0.92940 0.98398 0.95777 1.21316 1.01313 0.90915 1.08380 0.91681 0.91980 0.85695 0.82635 0.84868 0.88794 0.85891 0.82672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 15 2 O -0.33 -7.74 10.49 -91.47 -0.96 -8.70 15 3 C 0.13 3.59 6.69 22.59 0.15 3.74 15 4 C -0.15 -4.32 9.97 22.33 0.22 -4.09 15 5 C -0.06 -2.19 9.77 22.49 0.22 -1.97 15 6 C -0.05 -2.04 5.88 -20.03 -0.12 -2.16 15 7 C -0.03 -1.44 7.21 44.66 0.32 -1.12 15 8 N -0.37 -17.58 12.24 -49.77 -0.61 -18.19 15 9 O 0.26 12.65 11.62 140.97 1.64 14.28 15 10 N -0.50 -25.95 7.18 -52.51 -0.38 -26.33 15 11 C 0.13 6.92 6.86 42.60 0.29 7.21 15 12 C -0.42 -22.33 9.47 23.49 0.22 -22.11 15 13 H 0.10 5.16 6.70 -2.91 -0.02 5.14 15 14 C 0.07 3.38 5.52 85.32 0.47 3.85 15 15 N -0.82 -42.03 13.92 21.85 0.30 -41.72 15 16 Si 0.93 42.70 26.73 68.60 1.83 44.54 15 17 H -0.28 -12.86 7.11 99.48 0.71 -12.16 15 18 H -0.28 -11.88 7.11 99.48 0.71 -11.18 15 19 H -0.19 -9.14 5.21 99.48 0.52 -8.62 15 20 C -0.06 -2.30 9.05 22.48 0.20 -2.09 15 21 C -0.20 -5.89 9.02 22.33 0.20 -5.69 15 22 H 0.06 0.90 7.65 -2.39 -0.02 0.88 15 23 H 0.06 0.91 7.65 -2.39 -0.02 0.90 15 24 H 0.12 1.22 8.14 -2.39 -0.02 1.20 15 25 H 0.16 3.56 8.06 -2.91 -0.02 3.53 15 26 H 0.13 4.29 8.06 -2.91 -0.02 4.27 15 27 H 0.30 13.98 8.29 -92.71 -0.77 13.21 15 28 H 0.12 4.83 6.79 -2.91 -0.02 4.81 15 29 H 0.16 3.59 6.28 -2.91 -0.02 3.57 15 Total: -1.00 -59.76 258.46 6.13 -53.63 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: 1.00 Total: 5.57 kcal Atomic # 6 Polarization: -26.38 SS G_CDS: 3.30 Total: -23.08 kcal Atomic # 7 Polarization: -85.56 SS G_CDS: -0.68 Total: -86.24 kcal Atomic # 8 Polarization: 4.91 SS G_CDS: 0.68 Total: 5.59 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 1.83 Total: 44.54 kcal Total: -59.76 6.13 -53.63 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259839501.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.038 kcal (2) G-P(sol) polarization free energy of solvation -59.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds