Wall clock time and date at job start Mon Mar 30 2020 03:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31143 * 1 3 3 Si 1.86801 * 120.00020 * 2 1 4 4 H 1.48499 * 109.47156 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46693 * 299.99569 * 3 2 1 6 6 H 1.48503 * 109.47278 * 59.99583 * 3 2 1 7 7 C 1.39620 * 120.00204 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99769 * 179.97438 * 7 2 1 9 9 C 1.41256 * 119.99639 * 0.02562 * 7 2 1 10 10 C 1.41905 * 126.61640 * 359.97278 * 9 7 2 11 11 N 1.30294 * 108.22590 * 179.97438 * 10 9 7 12 12 N 1.39853 * 109.47525 * 0.02562 * 11 10 9 13 13 C 1.40112 * 125.70209 * 179.97438 * 12 11 10 14 14 C 1.38915 * 120.03885 * 145.02351 * 13 12 11 15 15 C 1.38130 * 120.04166 * 180.02562 * 14 13 12 16 16 C 1.38214 * 120.12357 * 359.97438 * 15 14 13 17 17 C 1.38773 * 120.08119 * 359.97438 * 16 15 14 18 18 O 1.35899 * 120.01974 * 180.02562 * 17 16 15 19 19 C 1.38631 * 119.95264 * 359.76804 * 17 16 15 20 20 C 1.35192 * 108.59649 * 0.02562 * 12 11 10 21 21 O 1.35296 * 126.53165 * 180.02562 * 20 12 11 22 22 H 0.96996 * 120.00168 * 0.02562 * 1 2 3 23 23 H 1.08000 * 125.89015 * 0.02562 * 10 9 7 24 24 H 1.07995 * 119.98042 * 359.97438 * 14 13 12 25 25 H 1.07998 * 119.93882 * 180.02562 * 15 14 13 26 26 H 1.07996 * 119.96045 * 180.02562 * 16 15 14 27 27 H 0.96708 * 113.99273 * 90.00391 * 18 17 16 28 28 H 1.08007 * 120.05781 * 180.25616 * 19 17 16 29 29 H 0.96700 * 113.99953 * 269.99190 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3114 0.0000 0.0000 3 14 2.2454 1.6177 0.0000 4 1 3.7054 1.3464 0.0006 5 1 1.8867 2.3963 -1.2126 6 1 1.8866 2.3965 1.2125 7 6 2.0096 -1.2091 0.0005 8 1 3.0896 -1.2090 0.0001 9 6 1.3033 -2.4324 0.0005 10 6 -0.1063 -2.5959 0.0006 11 7 -0.3686 -3.8722 0.0000 12 7 0.8291 -4.5943 0.0002 13 6 0.9419 -5.9908 0.0002 14 6 1.9801 -6.6047 -0.6890 15 6 2.0910 -7.9815 -0.6894 16 6 1.1704 -8.7518 -0.0043 17 6 0.1318 -8.1439 0.6868 18 8 -0.7724 -8.9024 1.3605 19 6 0.0205 -6.7621 0.6939 20 6 1.8599 -3.7195 0.0014 21 8 3.1774 -4.0274 0.0015 22 1 -0.4850 0.8400 -0.0004 23 1 -0.8360 -1.7997 0.0002 24 1 2.7005 -6.0051 -1.2255 25 1 2.8991 -8.4570 -1.2255 26 1 1.2598 -9.8281 -0.0061 27 1 -0.5288 -9.0814 2.2791 28 1 -0.7848 -6.2870 1.2346 29 1 3.5601 -4.1177 0.8849 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259845944.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:21 Heat of formation + Delta-G solvation = 17.412563 kcal Electronic energy + Delta-G solvation = -16906.721898 eV Core-core repulsion = 13990.130906 eV Total energy + Delta-G solvation = -2916.590992 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.15859 -38.98467 -36.48479 -35.87867 -33.90678 -32.02253 -29.76401 -28.78858 -28.03342 -24.94510 -22.58934 -22.24358 -19.96516 -19.82849 -18.61502 -17.25306 -16.49061 -16.02489 -15.50842 -15.20764 -14.95173 -14.38796 -13.82446 -13.34129 -13.16532 -13.04142 -12.41577 -11.90844 -11.82131 -11.45331 -11.36230 -11.31018 -10.94615 -10.62762 -10.47353 -9.89499 -9.67277 -9.13377 -8.88008 -8.50513 -7.70591 -7.31476 -6.75379 -4.23224 1.38709 1.53542 2.80305 3.07789 3.12699 3.13532 3.47616 3.90166 3.94163 4.07293 4.43106 5.13355 5.19026 5.31429 5.45223 5.58987 5.71040 5.98129 5.99391 6.40670 6.57545 6.67750 6.81995 6.90916 6.94792 7.20482 7.29609 7.75463 7.78701 7.91383 8.35968 8.54331 8.84345 9.00036 9.13143 10.22518 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.048293 B = 0.005539 C = 0.005089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.652888 B = 5053.983686 C = 5500.478201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.066 3.934 3 Si 0.925 3.075 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.416 4.416 8 H 0.079 0.921 9 C -0.001 4.001 10 C 0.059 3.941 11 N -0.309 5.309 12 N -0.353 5.353 13 C 0.213 3.787 14 C -0.150 4.150 15 C -0.083 4.083 16 C -0.180 4.180 17 C 0.120 3.880 18 O -0.500 6.500 19 C -0.164 4.164 20 C 0.038 3.962 21 O -0.451 6.451 22 H 0.281 0.719 23 H 0.214 0.786 24 H 0.136 0.864 25 H 0.127 0.873 26 H 0.123 0.877 27 H 0.386 0.614 28 H 0.132 0.868 29 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.743 -8.925 2.760 9.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.147 4.147 3 Si 0.750 3.250 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.449 4.449 8 H 0.097 0.903 9 C -0.011 4.011 10 C -0.130 4.130 11 N -0.130 5.130 12 N -0.143 5.143 13 C 0.117 3.883 14 C -0.171 4.171 15 C -0.102 4.102 16 C -0.200 4.200 17 C 0.075 3.925 18 O -0.309 6.309 19 C -0.186 4.186 20 C -0.120 4.120 21 O -0.250 6.250 22 H 0.092 0.908 23 H 0.229 0.771 24 H 0.153 0.847 25 H 0.145 0.855 26 H 0.141 0.859 27 H 0.242 0.758 28 H 0.150 0.850 29 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 1.448 -9.520 1.603 9.762 hybrid contribution 1.327 1.255 1.022 2.093 sum 2.775 -8.266 2.624 9.105 Atomic orbital electron populations 1.69449 1.07342 1.28880 1.40102 1.25833 0.94931 1.01354 0.92595 0.85982 0.80366 0.80275 0.78404 1.18647 1.19943 1.20004 1.18841 0.94426 0.88569 1.43047 0.90294 1.18057 0.91987 0.90592 1.00467 1.25273 0.97865 0.92085 0.97812 1.76829 1.03480 1.06758 1.25925 1.45374 1.05059 1.01737 1.62118 1.17314 0.95207 0.81018 0.94781 1.21149 1.00276 0.94774 1.00945 1.20764 0.98342 0.92749 0.98334 1.21216 0.95820 1.00052 1.02911 1.18163 0.89545 0.88500 0.96276 1.84817 1.46200 1.71508 1.28396 1.21207 1.01777 0.92702 1.02899 1.18618 0.79511 0.87518 1.26352 1.84864 1.17563 1.91642 1.30956 0.90842 0.77056 0.84658 0.85504 0.85854 0.75836 0.84964 0.79916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -20.41 10.32 55.53 0.57 -19.84 15 2 C 0.07 1.61 5.49 -17.33 -0.10 1.52 15 3 Si 0.92 18.52 29.56 -169.99 -5.02 13.49 15 4 H -0.26 -5.24 7.11 56.52 0.40 -4.84 15 5 H -0.27 -5.43 7.11 56.52 0.40 -5.03 15 6 H -0.27 -5.39 7.11 56.52 0.40 -4.99 15 7 C -0.42 -10.91 9.38 -37.92 -0.36 -11.26 15 8 H 0.08 2.02 7.84 -52.49 -0.41 1.61 15 9 C 0.00 -0.03 5.95 -106.60 -0.63 -0.67 15 10 C 0.06 1.53 10.90 -16.80 -0.18 1.35 15 11 N -0.31 -7.84 12.20 30.97 0.38 -7.46 15 12 N -0.35 -8.49 3.72 -9.94 -0.04 -8.53 15 13 C 0.21 4.40 6.38 -83.64 -0.53 3.87 15 14 C -0.15 -2.70 9.15 -39.37 -0.36 -3.06 15 15 C -0.08 -1.20 10.03 -39.63 -0.40 -1.60 15 16 C -0.18 -2.54 9.98 -39.39 -0.39 -2.93 15 17 C 0.12 1.88 6.70 -39.24 -0.26 1.62 15 18 O -0.50 -6.75 13.50 -19.42 -0.26 -7.01 15 19 C -0.16 -3.06 9.69 -39.25 -0.38 -3.44 15 20 C 0.04 0.95 7.76 -15.32 -0.12 0.83 15 21 O -0.45 -9.82 11.98 -17.58 -0.21 -10.03 15 22 H 0.28 6.28 8.30 -40.82 -0.34 5.94 15 23 H 0.21 5.45 5.76 -52.49 -0.30 5.15 15 24 H 0.14 2.55 6.89 -52.49 -0.36 2.18 15 25 H 0.13 1.44 8.06 -52.49 -0.42 1.02 15 26 H 0.12 1.41 8.06 -52.49 -0.42 0.99 15 27 H 0.39 3.18 9.06 45.56 0.41 3.59 15 28 H 0.13 2.56 8.06 -52.48 -0.42 2.13 15 29 H 0.35 6.15 9.06 45.56 0.41 6.56 15 LS Contribution 265.12 15.07 4.00 4.00 Total: -1.00 -29.90 265.12 -4.96 -34.85 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -0.65 Total: 14.32 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: -3.72 Total: -13.79 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: 0.91 Total: -35.83 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: -0.47 Total: -17.04 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.02 Total: 13.49 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -29.90 -4.96 -34.85 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259845944.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.265 kcal (2) G-P(sol) polarization free energy of solvation -29.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds