Wall clock time and date at job start Mon Mar 30 2020 03:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31143 * 1 3 3 Si 1.86801 * 120.00020 * 2 1 4 4 H 1.48499 * 109.47156 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46693 * 299.99569 * 3 2 1 6 6 H 1.48503 * 109.47278 * 59.99583 * 3 2 1 7 7 C 1.39620 * 120.00204 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99769 * 179.97438 * 7 2 1 9 9 C 1.41256 * 119.99639 * 0.02562 * 7 2 1 10 10 C 1.41905 * 126.61640 * 359.97278 * 9 7 2 11 11 N 1.30294 * 108.22590 * 179.97438 * 10 9 7 12 12 N 1.39853 * 109.47525 * 0.02562 * 11 10 9 13 13 C 1.40112 * 125.70209 * 179.97438 * 12 11 10 14 14 C 1.38915 * 120.03885 * 145.02351 * 13 12 11 15 15 C 1.38130 * 120.04166 * 180.02562 * 14 13 12 16 16 C 1.38214 * 120.12357 * 359.97438 * 15 14 13 17 17 C 1.38773 * 120.08119 * 359.97438 * 16 15 14 18 18 O 1.35899 * 120.01974 * 180.02562 * 17 16 15 19 19 C 1.38631 * 119.95264 * 359.76804 * 17 16 15 20 20 C 1.35192 * 108.59649 * 0.02562 * 12 11 10 21 21 O 1.35296 * 126.53165 * 180.02562 * 20 12 11 22 22 H 0.96996 * 120.00168 * 0.02562 * 1 2 3 23 23 H 1.08000 * 125.89015 * 0.02562 * 10 9 7 24 24 H 1.07995 * 119.98042 * 359.97438 * 14 13 12 25 25 H 1.07998 * 119.93882 * 180.02562 * 15 14 13 26 26 H 1.07996 * 119.96045 * 180.02562 * 16 15 14 27 27 H 0.96708 * 113.99273 * 90.00391 * 18 17 16 28 28 H 1.08007 * 120.05781 * 180.25616 * 19 17 16 29 29 H 0.96700 * 113.99953 * 269.99190 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3114 0.0000 0.0000 3 14 2.2454 1.6177 0.0000 4 1 3.7054 1.3464 0.0006 5 1 1.8867 2.3963 -1.2126 6 1 1.8866 2.3965 1.2125 7 6 2.0096 -1.2091 0.0005 8 1 3.0896 -1.2090 0.0001 9 6 1.3033 -2.4324 0.0005 10 6 -0.1063 -2.5959 0.0006 11 7 -0.3686 -3.8722 0.0000 12 7 0.8291 -4.5943 0.0002 13 6 0.9419 -5.9908 0.0002 14 6 1.9801 -6.6047 -0.6890 15 6 2.0910 -7.9815 -0.6894 16 6 1.1704 -8.7518 -0.0043 17 6 0.1318 -8.1439 0.6868 18 8 -0.7724 -8.9024 1.3605 19 6 0.0205 -6.7621 0.6939 20 6 1.8599 -3.7195 0.0014 21 8 3.1774 -4.0274 0.0015 22 1 -0.4850 0.8400 -0.0004 23 1 -0.8360 -1.7997 0.0002 24 1 2.7005 -6.0051 -1.2255 25 1 2.8991 -8.4570 -1.2255 26 1 1.2598 -9.8281 -0.0061 27 1 -0.5288 -9.0814 2.2791 28 1 -0.7848 -6.2870 1.2346 29 1 3.5601 -4.1177 0.8849 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259845944.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:21 Heat of formation + Delta-G solvation = -5.757179 kcal Electronic energy + Delta-G solvation = -16907.726613 eV Core-core repulsion = 13990.130906 eV Total energy + Delta-G solvation = -2917.595708 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.88887 -40.37347 -37.77288 -37.66146 -35.68290 -33.60654 -31.13619 -30.65390 -29.59183 -26.78652 -24.08745 -23.63731 -21.68933 -21.60851 -20.20902 -18.78212 -18.24448 -17.34512 -17.00807 -16.73241 -16.62379 -15.77267 -15.42252 -14.91342 -14.75510 -14.67568 -14.17955 -13.32634 -13.20029 -13.12963 -12.90185 -12.84550 -12.77792 -12.25337 -11.78525 -11.51681 -11.38394 -10.91854 -10.61502 -9.81769 -9.51891 -9.04729 -8.54443 -6.15669 -0.03132 0.23010 1.13050 1.44416 1.48506 1.58930 1.76402 2.17623 2.27335 2.61080 3.23267 3.31051 3.65959 3.89977 4.13056 4.18951 4.31059 4.56004 4.66076 4.92162 5.00485 5.18201 5.32449 5.38720 5.44531 5.49800 5.70698 5.88006 6.23250 6.43789 6.68451 6.81751 6.96291 7.16129 7.27609 8.45820 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.048293 B = 0.005539 C = 0.005089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.652888 B = 5053.983686 C = 5500.478201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.026 3.974 3 Si 0.997 3.003 4 H -0.262 1.262 5 H -0.268 1.268 6 H -0.265 1.265 7 C -0.453 4.453 8 H 0.073 0.927 9 C -0.042 4.042 10 C 0.034 3.966 11 N -0.323 5.323 12 N -0.351 5.351 13 C 0.167 3.833 14 C -0.156 4.156 15 C -0.067 4.067 16 C -0.156 4.156 17 C 0.129 3.871 18 O -0.503 6.503 19 C -0.178 4.178 20 C 0.051 3.949 21 O -0.451 6.451 22 H 0.288 0.712 23 H 0.207 0.793 24 H 0.123 0.877 25 H 0.170 0.830 26 H 0.166 0.834 27 H 0.412 0.588 28 H 0.114 0.886 29 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.055 -11.328 2.809 12.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.184 4.184 3 Si 0.819 3.181 4 H -0.186 1.186 5 H -0.193 1.193 6 H -0.190 1.190 7 C -0.486 4.486 8 H 0.092 0.908 9 C -0.052 4.052 10 C -0.154 4.154 11 N -0.146 5.146 12 N -0.142 5.142 13 C 0.073 3.927 14 C -0.178 4.178 15 C -0.086 4.086 16 C -0.175 4.175 17 C 0.084 3.916 18 O -0.316 6.316 19 C -0.199 4.199 20 C -0.110 4.110 21 O -0.252 6.252 22 H 0.099 0.901 23 H 0.223 0.777 24 H 0.141 0.859 25 H 0.187 0.813 26 H 0.183 0.817 27 H 0.272 0.728 28 H 0.132 0.868 29 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 2.749 -11.987 1.684 12.413 hybrid contribution 0.945 1.569 1.043 2.108 sum 3.694 -10.418 2.727 11.385 Atomic orbital electron populations 1.69500 1.08494 1.30082 1.40268 1.26676 0.95778 1.04277 0.91708 0.84911 0.78767 0.75743 0.78720 1.18605 1.19295 1.19005 1.18980 0.94261 0.89567 1.45807 0.90839 1.18432 0.92552 0.91747 1.02431 1.25122 0.97871 0.92308 1.00056 1.76706 1.04582 1.06653 1.26701 1.45572 1.04207 1.03193 1.61241 1.17776 0.97635 0.79532 0.97744 1.21217 0.99187 0.96473 1.00888 1.21208 0.99132 0.90948 0.97273 1.21682 0.93749 1.02058 1.00034 1.18211 0.89866 0.87314 0.96216 1.84761 1.46015 1.70544 1.30327 1.21217 1.01136 0.94305 1.03263 1.18776 0.80556 0.87564 1.24070 1.84749 1.16149 1.91494 1.32827 0.90081 0.77689 0.85862 0.81296 0.81687 0.72817 0.86810 0.77199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -43.70 10.32 21.78 0.22 -43.48 15 2 C 0.03 1.29 5.49 85.13 0.47 1.76 15 3 Si 1.00 38.53 29.56 68.60 2.03 40.56 15 4 H -0.26 -9.98 7.11 99.48 0.71 -9.27 15 5 H -0.27 -10.00 7.11 99.48 0.71 -9.29 15 6 H -0.27 -9.75 7.11 99.48 0.71 -9.05 15 7 C -0.45 -24.76 9.38 23.35 0.22 -24.54 15 8 H 0.07 3.91 7.84 -2.91 -0.02 3.89 15 9 C -0.04 -2.33 5.95 -21.14 -0.13 -2.45 15 10 C 0.03 1.85 10.90 85.83 0.94 2.79 15 11 N -0.32 -17.23 12.20 -55.93 -0.68 -17.91 15 12 N -0.35 -17.40 3.72 -296.89 -1.10 -18.50 15 13 C 0.17 6.87 6.38 38.10 0.24 7.11 15 14 C -0.16 -5.37 9.15 22.41 0.21 -5.16 15 15 C -0.07 -1.64 10.03 22.24 0.22 -1.42 15 16 C -0.16 -3.58 9.98 22.39 0.22 -3.35 15 17 C 0.13 3.64 6.70 22.49 0.15 3.79 15 18 O -0.50 -11.78 13.50 -92.41 -1.25 -13.03 15 19 C -0.18 -6.53 9.69 22.48 0.22 -6.32 15 20 C 0.05 2.60 7.76 84.66 0.66 3.26 15 21 O -0.45 -19.71 11.98 -85.83 -1.03 -20.74 15 22 H 0.29 13.28 8.30 -92.71 -0.77 12.51 15 23 H 0.21 11.35 5.76 -2.91 -0.02 11.33 15 24 H 0.12 4.52 6.89 -2.91 -0.02 4.50 15 25 H 0.17 2.78 8.06 -2.91 -0.02 2.75 15 26 H 0.17 2.55 8.06 -2.91 -0.02 2.53 15 27 H 0.41 5.18 9.06 -74.05 -0.67 4.51 15 28 H 0.11 4.52 8.06 -2.91 -0.02 4.50 15 29 H 0.37 13.00 9.06 -74.06 -0.67 12.33 15 Total: -1.00 -67.89 265.12 1.49 -66.40 By element: Atomic # 1 Polarization: 31.36 SS G_CDS: -0.12 Total: 31.24 kcal Atomic # 6 Polarization: -27.96 SS G_CDS: 3.42 Total: -24.54 kcal Atomic # 7 Polarization: -78.33 SS G_CDS: -1.56 Total: -79.90 kcal Atomic # 8 Polarization: -31.49 SS G_CDS: -2.28 Total: -33.77 kcal Atomic # 14 Polarization: 38.53 SS G_CDS: 2.03 Total: 40.56 kcal Total: -67.89 1.49 -66.40 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259845944.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.643 kcal (2) G-P(sol) polarization free energy of solvation -67.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds