Wall clock time and date at job start Mon Mar 30 2020 04:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35305 * 116.99873 * 2 1 4 4 N 1.31991 * 120.76792 * 0.02562 * 3 2 1 5 5 C 1.34011 * 121.33474 * 180.02562 * 4 3 2 6 6 C 1.41326 * 118.74507 * 179.97438 * 5 4 3 7 7 H 1.08001 * 119.99536 * 179.97438 * 6 5 4 8 8 C 1.40077 * 120.00359 * 359.97438 * 6 5 4 9 9 N 1.30679 * 119.99715 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00120 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47262 * 60.00176 * 10 8 6 12 12 H 1.48505 * 109.47309 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47308 * 299.99779 * 10 8 6 14 14 N 1.33019 * 122.50506 * 359.95715 * 5 4 3 15 15 C 1.33458 * 120.35070 * 0.02562 * 14 5 4 16 16 C 1.40524 * 121.78195 * 180.02562 * 15 14 5 17 17 C 1.36378 * 119.82649 * 179.97438 * 16 15 14 18 18 C 1.39025 * 121.10990 * 359.97438 * 17 16 15 19 19 C 1.38338 * 120.74468 * 359.97438 * 18 17 16 20 20 O 1.35715 * 120.32030 * 179.97438 * 19 18 17 21 21 C 1.40145 * 119.35114 * 0.02562 * 19 18 17 22 22 H 1.09000 * 109.47221 * 300.00611 * 1 2 3 23 23 H 1.09001 * 109.47137 * 60.00101 * 1 2 3 24 24 H 1.09000 * 109.47061 * 180.02562 * 1 2 3 25 25 H 0.97002 * 120.00132 * 179.97438 * 9 8 6 26 26 H 1.07995 * 120.08862 * 0.02562 * 16 15 14 27 27 H 1.07996 * 119.44636 * 180.28248 * 17 16 15 28 28 H 1.08005 * 119.62223 * 179.97438 * 18 17 16 29 29 H 0.96704 * 113.99882 * 90.00368 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0433 1.2056 0.0000 4 7 1.3393 2.3221 0.0005 5 6 1.9358 3.5221 0.0000 6 6 1.1288 4.6823 0.0000 7 1 1.5883 5.6596 0.0000 8 6 -0.2671 4.5646 0.0000 9 7 -0.8230 3.3820 -0.0005 10 14 -1.3337 6.0981 0.0008 11 1 -1.0418 6.9047 -1.2113 12 1 -2.7658 5.7050 0.0001 13 1 -1.0417 6.9036 1.2137 14 7 3.2585 3.6628 -0.0002 15 6 4.0509 2.5890 -0.0004 16 6 5.4516 2.7027 -0.0001 17 6 6.2234 1.5783 0.0002 18 6 5.6486 0.3125 0.0008 19 6 4.2736 0.1601 0.0015 20 8 3.7217 -1.0797 0.0015 21 6 3.4563 1.2986 0.0012 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -1.7896 3.3004 -0.0001 26 1 5.9156 3.6779 0.0008 27 1 7.2992 1.6729 0.0051 28 1 6.2828 -0.5618 0.0006 29 1 3.5622 -1.4393 0.8849 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259848933.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:42 Heat of formation + Delta-G solvation = -16.456530 kcal Electronic energy + Delta-G solvation = -17530.229824 eV Core-core repulsion = 14612.170157 eV Total energy + Delta-G solvation = -2918.059666 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.99969 -37.77325 -37.25239 -35.40108 -33.61096 -31.44499 -30.13747 -28.55795 -26.89918 -26.22208 -22.82229 -22.34893 -20.98443 -18.89625 -17.40033 -17.09837 -16.50750 -15.93251 -15.16361 -15.09344 -14.59454 -14.21811 -13.82609 -13.22211 -13.08120 -12.89545 -11.97346 -11.51287 -11.37507 -11.26029 -11.16949 -11.00003 -10.87252 -10.58732 -10.47331 -10.41145 -9.43623 -9.05724 -8.83322 -8.15750 -7.66772 -7.09338 -6.81849 -4.91758 1.50289 2.06199 2.89106 2.93131 2.96100 3.15842 3.71413 3.91900 3.96319 4.55336 4.88394 5.53474 5.65072 5.74271 5.77747 5.86066 5.98977 6.07465 6.13753 6.23922 6.48750 6.58158 6.78492 6.82338 7.05756 7.14390 7.24716 7.57430 7.81649 8.10660 8.27933 8.30732 8.41478 8.89030 9.87181 10.06048 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.029098 B = 0.008379 C = 0.006533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.026500 B = 3340.773015 C = 4285.084760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 O -0.303 6.303 3 C 0.383 3.617 4 N -0.534 5.534 5 C 0.415 3.585 6 C -0.374 4.374 7 H 0.100 0.900 8 C 0.064 3.936 9 N -0.703 5.703 10 Si 0.925 3.075 11 H -0.260 1.260 12 H -0.275 1.275 13 H -0.260 1.260 14 N -0.626 5.626 15 C 0.245 3.755 16 C -0.167 4.167 17 C -0.057 4.057 18 C -0.247 4.247 19 C 0.193 3.807 20 O -0.491 6.491 21 C -0.279 4.279 22 H 0.058 0.942 23 H 0.059 0.941 24 H 0.077 0.923 25 H 0.279 0.721 26 H 0.122 0.878 27 H 0.114 0.886 28 H 0.113 0.887 29 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.463 -4.208 1.648 4.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 O -0.206 6.206 3 C 0.178 3.822 4 N -0.267 5.267 5 C 0.182 3.818 6 C -0.408 4.408 7 H 0.118 0.882 8 C -0.164 4.164 9 N -0.324 5.324 10 Si 0.748 3.252 11 H -0.185 1.185 12 H -0.200 1.200 13 H -0.185 1.185 14 N -0.352 5.352 15 C 0.106 3.894 16 C -0.187 4.187 17 C -0.079 4.079 18 C -0.268 4.268 19 C 0.145 3.855 20 O -0.301 6.301 21 C -0.289 4.289 22 H 0.077 0.923 23 H 0.078 0.922 24 H 0.095 0.905 25 H 0.090 0.910 26 H 0.140 0.860 27 H 0.132 0.868 28 H 0.131 0.869 29 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 0.692 -3.583 1.037 3.793 hybrid contribution -0.344 -0.252 0.468 0.633 sum 0.348 -3.835 1.505 4.134 Atomic orbital electron populations 1.22687 0.78173 1.00558 1.03320 1.86145 1.22116 1.25281 1.87093 1.20363 0.87840 0.86347 0.87655 1.69022 1.37742 0.97334 1.22572 1.19610 0.86006 0.89199 0.86988 1.19533 0.89774 0.92927 1.38529 0.88178 1.26236 0.98962 0.98052 0.93199 1.70088 1.12095 1.24219 1.25987 0.86079 0.77928 0.80760 0.80417 1.18468 1.19957 1.18470 1.69211 1.04858 1.29386 1.31732 1.18661 0.94019 0.86951 0.89752 1.20415 0.91157 0.98376 1.08781 1.20439 0.98725 0.91902 0.96795 1.20826 0.93375 0.97343 1.15211 1.18274 0.90211 0.83071 0.93900 1.84682 1.83544 1.29174 1.32660 1.18808 0.91600 0.95612 1.22837 0.92306 0.92247 0.90476 0.90984 0.86034 0.86790 0.86931 0.76037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.91 10.42 101.05 1.05 1.96 15 2 O -0.30 -6.62 8.62 -38.99 -0.34 -6.96 15 3 C 0.38 9.59 7.57 -16.20 -0.12 9.47 15 4 N -0.53 -14.36 6.72 -12.41 -0.08 -14.44 15 5 C 0.42 11.59 7.35 -158.30 -1.16 10.43 15 6 C -0.37 -9.81 9.34 -37.72 -0.35 -10.16 15 7 H 0.10 2.51 7.85 -52.49 -0.41 2.10 15 8 C 0.06 1.51 5.50 -17.35 -0.10 1.41 15 9 N -0.70 -16.93 11.37 55.55 0.63 -16.30 15 10 Si 0.93 17.35 29.56 -169.99 -5.02 12.32 15 11 H -0.26 -4.87 7.11 56.52 0.40 -4.46 15 12 H -0.27 -4.96 7.11 56.52 0.40 -4.55 15 13 H -0.26 -4.85 7.11 56.52 0.40 -4.44 15 14 N -0.63 -17.07 10.34 -10.71 -0.11 -17.19 15 15 C 0.25 6.10 6.62 -84.83 -0.56 5.54 15 16 C -0.17 -3.48 10.01 -39.39 -0.39 -3.88 15 17 C -0.06 -1.03 9.94 -39.96 -0.40 -1.42 15 18 C -0.25 -4.54 9.97 -39.25 -0.39 -4.93 15 19 C 0.19 4.01 6.72 -38.83 -0.26 3.74 15 20 O -0.49 -9.07 11.62 -40.23 -0.47 -9.54 15 21 C -0.28 -6.77 5.77 -106.42 -0.61 -7.39 15 22 H 0.06 1.16 8.12 -51.93 -0.42 0.74 15 23 H 0.06 1.20 8.12 -51.93 -0.42 0.78 15 24 H 0.08 1.13 8.14 -51.93 -0.42 0.71 15 25 H 0.28 5.99 8.29 -40.82 -0.34 5.65 15 26 H 0.12 2.34 8.06 -52.49 -0.42 1.92 15 27 H 0.11 1.60 8.06 -52.49 -0.42 1.18 15 28 H 0.11 1.76 8.06 -52.48 -0.42 1.34 15 29 H 0.38 5.34 9.06 45.56 0.41 5.75 15 LS Contribution 262.51 15.07 3.96 3.96 Total: -1.00 -30.28 262.51 -6.40 -36.68 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -1.67 Total: 6.70 kcal Atomic # 6 Polarization: 8.07 SS G_CDS: -3.30 Total: 4.77 kcal Atomic # 7 Polarization: -48.37 SS G_CDS: 0.44 Total: -47.93 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: -0.80 Total: -16.50 kcal Atomic # 14 Polarization: 17.35 SS G_CDS: -5.02 Total: 12.32 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -30.28 -6.40 -36.68 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259848933.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.225 kcal (2) G-P(sol) polarization free energy of solvation -30.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds