Wall clock time and date at job start Mon Mar 30 2020 04:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35305 * 116.99873 * 2 1 4 4 N 1.31991 * 120.76792 * 0.02562 * 3 2 1 5 5 C 1.34011 * 121.33474 * 180.02562 * 4 3 2 6 6 C 1.41326 * 118.74507 * 179.97438 * 5 4 3 7 7 H 1.08001 * 119.99536 * 179.97438 * 6 5 4 8 8 C 1.40077 * 120.00359 * 359.97438 * 6 5 4 9 9 N 1.30679 * 119.99715 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00120 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47262 * 60.00176 * 10 8 6 12 12 H 1.48505 * 109.47309 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47308 * 299.99779 * 10 8 6 14 14 N 1.33019 * 122.50506 * 359.95715 * 5 4 3 15 15 C 1.33458 * 120.35070 * 0.02562 * 14 5 4 16 16 C 1.40524 * 121.78195 * 180.02562 * 15 14 5 17 17 C 1.36378 * 119.82649 * 179.97438 * 16 15 14 18 18 C 1.39025 * 121.10990 * 359.97438 * 17 16 15 19 19 C 1.38338 * 120.74468 * 359.97438 * 18 17 16 20 20 O 1.35715 * 120.32030 * 179.97438 * 19 18 17 21 21 C 1.40145 * 119.35114 * 0.02562 * 19 18 17 22 22 H 1.09000 * 109.47221 * 300.00611 * 1 2 3 23 23 H 1.09001 * 109.47137 * 60.00101 * 1 2 3 24 24 H 1.09000 * 109.47061 * 180.02562 * 1 2 3 25 25 H 0.97002 * 120.00132 * 179.97438 * 9 8 6 26 26 H 1.07995 * 120.08862 * 0.02562 * 16 15 14 27 27 H 1.07996 * 119.44636 * 180.28248 * 17 16 15 28 28 H 1.08005 * 119.62223 * 179.97438 * 18 17 16 29 29 H 0.96704 * 113.99882 * 90.00368 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0433 1.2056 0.0000 4 7 1.3393 2.3221 0.0005 5 6 1.9358 3.5221 0.0000 6 6 1.1288 4.6823 0.0000 7 1 1.5883 5.6596 0.0000 8 6 -0.2671 4.5646 0.0000 9 7 -0.8230 3.3820 -0.0005 10 14 -1.3337 6.0981 0.0008 11 1 -1.0418 6.9047 -1.2113 12 1 -2.7658 5.7050 0.0001 13 1 -1.0417 6.9036 1.2137 14 7 3.2585 3.6628 -0.0002 15 6 4.0509 2.5890 -0.0004 16 6 5.4516 2.7027 -0.0001 17 6 6.2234 1.5783 0.0002 18 6 5.6486 0.3125 0.0008 19 6 4.2736 0.1601 0.0015 20 8 3.7217 -1.0797 0.0015 21 6 3.4563 1.2986 0.0012 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -1.7896 3.3004 -0.0001 26 1 5.9156 3.6779 0.0008 27 1 7.2992 1.6729 0.0051 28 1 6.2828 -0.5618 0.0006 29 1 3.5622 -1.4393 0.8849 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259848933.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:42 Heat of formation + Delta-G solvation = -38.367688 kcal Electronic energy + Delta-G solvation = -17531.179963 eV Core-core repulsion = 14612.170157 eV Total energy + Delta-G solvation = -2919.009805 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.74584 -39.42009 -38.94496 -37.01344 -35.37156 -33.26023 -31.87366 -30.23935 -28.59286 -27.92071 -24.50716 -24.13243 -22.66286 -20.60817 -19.12333 -18.79861 -18.16911 -17.63618 -16.85991 -16.81240 -16.21014 -15.75684 -15.40811 -14.83909 -14.76338 -14.63670 -13.55917 -13.10633 -12.99241 -12.90177 -12.74939 -12.65757 -12.59700 -12.25901 -12.02485 -11.95840 -11.13234 -10.80406 -10.59950 -9.86597 -9.57001 -8.81278 -8.58615 -6.82156 -0.17320 0.34789 1.27847 1.38660 1.50843 1.52330 2.15777 2.21913 2.28786 2.84433 3.38338 3.83724 3.84191 3.99870 4.17858 4.31143 4.42008 4.54042 4.56860 4.66154 4.90140 4.99433 5.03571 5.24089 5.48651 5.51039 5.66208 5.91948 6.03287 6.26813 6.43901 6.54957 6.93149 7.03901 8.08260 8.22661 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.029098 B = 0.008379 C = 0.006533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.026500 B = 3340.773015 C = 4285.084760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 O -0.299 6.299 3 C 0.368 3.632 4 N -0.556 5.556 5 C 0.384 3.616 6 C -0.410 4.410 7 H 0.096 0.904 8 C 0.025 3.975 9 N -0.729 5.729 10 Si 1.005 2.995 11 H -0.259 1.259 12 H -0.259 1.259 13 H -0.257 1.257 14 N -0.661 5.661 15 C 0.212 3.788 16 C -0.186 4.186 17 C -0.034 4.034 18 C -0.227 4.227 19 C 0.184 3.816 20 O -0.493 6.493 21 C -0.308 4.308 22 H 0.044 0.956 23 H 0.039 0.961 24 H 0.126 0.874 25 H 0.289 0.711 26 H 0.131 0.869 27 H 0.166 0.834 28 H 0.153 0.847 29 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.507 -5.439 1.766 6.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 O -0.202 6.202 3 C 0.164 3.836 4 N -0.289 5.289 5 C 0.150 3.850 6 C -0.444 4.444 7 H 0.114 0.886 8 C -0.201 4.201 9 N -0.350 5.350 10 Si 0.823 3.177 11 H -0.183 1.183 12 H -0.182 1.182 13 H -0.182 1.182 14 N -0.388 5.388 15 C 0.076 3.924 16 C -0.206 4.206 17 C -0.055 4.055 18 C -0.247 4.247 19 C 0.136 3.864 20 O -0.305 6.305 21 C -0.317 4.317 22 H 0.063 0.937 23 H 0.058 0.942 24 H 0.144 0.856 25 H 0.100 0.900 26 H 0.149 0.851 27 H 0.184 0.816 28 H 0.171 0.829 29 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 1.774 -4.882 1.169 5.324 hybrid contribution -0.492 -0.092 0.439 0.666 sum 1.283 -4.974 1.608 5.382 Atomic orbital electron populations 1.22832 0.76657 1.03127 1.01670 1.86140 1.23510 1.23759 1.86828 1.20765 0.88805 0.86758 0.87286 1.68982 1.38290 0.97604 1.24068 1.20080 0.86786 0.90192 0.87985 1.19828 0.91420 0.92485 1.40688 0.88625 1.27140 0.99144 1.01585 0.92205 1.70129 1.13000 1.26214 1.25674 0.84926 0.76340 0.76186 0.80266 1.18308 1.18236 1.18155 1.69194 1.05022 1.30910 1.33653 1.19276 0.95649 0.87036 0.90480 1.20671 0.89690 1.00310 1.09970 1.20988 1.01011 0.90454 0.93010 1.21332 0.92578 0.99020 1.11736 1.18399 0.90998 0.82842 0.94121 1.84627 1.83553 1.27837 1.34471 1.19147 0.91794 0.96862 1.23856 0.93699 0.94176 0.85596 0.89953 0.85146 0.81644 0.82894 0.73717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.96 10.42 113.37 1.18 3.14 15 2 O -0.30 -13.13 8.62 -65.47 -0.56 -13.70 15 3 C 0.37 19.00 7.57 85.50 0.65 19.65 15 4 N -0.56 -31.36 6.72 -306.38 -2.06 -33.42 15 5 C 0.38 22.66 7.35 135.05 0.99 23.65 15 6 C -0.41 -22.71 9.34 23.48 0.22 -22.49 15 7 H 0.10 5.11 7.85 -2.91 -0.02 5.09 15 8 C 0.02 1.21 5.50 85.31 0.47 1.68 15 9 N -0.73 -36.27 11.37 21.84 0.25 -36.02 15 10 Si 1.00 36.10 29.56 68.60 2.03 38.13 15 11 H -0.26 -9.15 7.11 99.48 0.71 -8.44 15 12 H -0.26 -8.50 7.11 99.48 0.71 -7.80 15 13 H -0.26 -9.04 7.11 99.48 0.71 -8.33 15 14 N -0.66 -37.88 10.34 -187.80 -1.94 -39.82 15 15 C 0.21 10.79 6.62 40.41 0.27 11.06 15 16 C -0.19 -7.57 10.01 22.39 0.22 -7.35 15 17 C -0.03 -1.08 9.94 22.02 0.22 -0.86 15 18 C -0.23 -7.37 9.97 22.48 0.22 -7.15 15 19 C 0.18 7.29 6.72 22.76 0.15 7.44 15 20 O -0.49 -17.00 11.62 -69.91 -0.81 -17.81 15 21 C -0.31 -15.09 5.77 -21.03 -0.12 -15.21 15 22 H 0.04 1.80 8.12 -2.39 -0.02 1.78 15 23 H 0.04 1.65 8.12 -2.39 -0.02 1.63 15 24 H 0.13 3.44 8.14 -2.39 -0.02 3.42 15 25 H 0.29 12.65 8.29 -92.71 -0.77 11.88 15 26 H 0.13 4.94 8.06 -2.91 -0.02 4.91 15 27 H 0.17 3.60 8.06 -2.91 -0.02 3.58 15 28 H 0.15 3.81 8.06 -2.91 -0.02 3.79 15 29 H 0.40 10.18 9.06 -74.05 -0.67 9.51 15 Total: -1.00 -69.97 262.51 1.90 -68.06 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: 0.53 Total: 21.02 kcal Atomic # 6 Polarization: 9.09 SS G_CDS: 4.48 Total: 13.56 kcal Atomic # 7 Polarization: -105.51 SS G_CDS: -3.75 Total: -109.27 kcal Atomic # 8 Polarization: -30.13 SS G_CDS: -1.38 Total: -31.51 kcal Atomic # 14 Polarization: 36.10 SS G_CDS: 2.03 Total: 38.13 kcal Total: -69.97 1.90 -68.06 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259848933.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.696 kcal (2) G-P(sol) polarization free energy of solvation -69.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds