Wall clock time and date at job start Mon Mar 30 2020 04:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38658 * 119.95678 * 2 1 4 4 C 1.38716 * 118.07770 * 180.26586 * 3 2 1 5 5 C 1.39829 * 117.88517 * 359.46096 * 4 3 2 6 6 C 1.47965 * 120.19092 * 180.25728 * 5 4 3 7 7 N 1.32035 * 126.66441 * 179.71455 * 6 5 4 8 8 C 1.34206 * 105.55521 * 179.89343 * 7 6 5 9 9 C 1.50699 * 126.19195 * 180.11479 * 8 7 6 10 10 C 1.50699 * 109.47327 * 270.28090 * 9 8 7 11 11 H 1.08005 * 119.99724 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00173 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00246 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99849 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47154 * 90.00258 * 14 12 10 16 16 H 1.48510 * 109.46937 * 210.00136 * 14 12 10 17 17 H 1.48496 * 109.47308 * 330.00089 * 14 12 10 18 18 N 1.30037 * 107.61971 * 0.37069 * 8 7 6 19 19 O 1.21294 * 110.46217 * 359.76517 * 18 8 7 20 20 N 1.32842 * 119.61679 * 0.27529 * 5 4 3 21 21 N 1.28343 * 122.01429 * 0.02562 * 20 5 4 22 22 H 1.08998 * 109.47199 * 270.28396 * 1 2 3 23 23 H 1.08996 * 109.47147 * 30.28844 * 1 2 3 24 24 H 1.09003 * 109.47197 * 150.28525 * 1 2 3 25 25 H 1.07997 * 120.96588 * 0.02562 * 3 2 1 26 26 H 1.08002 * 121.05980 * 179.74098 * 4 3 2 27 27 H 1.09005 * 109.46928 * 30.27657 * 9 8 7 28 28 H 1.08999 * 109.47577 * 150.27725 * 9 8 7 29 29 H 0.96995 * 120.00510 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1993 1.2013 0.0000 4 6 3.5857 1.1559 -0.0057 5 6 4.1989 -0.1008 0.0006 6 6 5.6746 -0.2087 0.0007 7 7 6.3836 -1.3225 0.0115 8 6 7.6676 -0.9318 0.0043 9 6 8.8730 -1.8363 0.0092 10 6 9.2746 -2.1303 1.4316 11 1 8.7134 -1.7045 2.2502 12 6 10.3585 -2.9430 1.6879 13 7 11.0416 -3.4620 0.6912 14 14 10.8567 -3.3068 3.4511 15 1 10.1480 -4.5227 3.9249 16 1 12.3232 -3.5324 3.5146 17 1 10.4952 -2.1548 4.3155 18 7 7.6833 0.3684 -0.0022 19 8 6.5521 0.8062 -0.0043 20 7 3.4488 -1.1972 0.0060 21 7 2.1665 -1.1443 0.0053 22 1 -0.3633 0.0051 1.0276 23 1 -0.3633 0.8874 -0.5183 24 1 -0.3634 -0.8925 -0.5094 25 1 1.6745 2.1452 0.0004 26 1 4.1730 2.0623 -0.0101 27 1 8.6294 -2.7689 -0.4998 28 1 9.6978 -1.3453 -0.5072 29 1 11.8044 -4.0334 0.8715 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259887052.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:41 Heat of formation + Delta-G solvation = 122.006520 kcal Electronic energy + Delta-G solvation = -16357.220583 eV Core-core repulsion = 13477.457877 eV Total energy + Delta-G solvation = -2879.762707 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -44.98579 -41.24260 -35.65320 -34.69268 -33.83351 -33.06421 -31.56020 -28.77406 -28.48416 -25.46344 -24.20047 -23.60055 -22.71864 -20.92413 -17.97769 -17.73496 -17.61434 -16.33060 -16.21091 -15.81419 -15.43879 -14.67663 -14.06781 -13.56128 -13.36256 -12.87800 -12.72608 -12.48007 -12.17834 -11.50502 -11.40823 -11.36083 -10.96288 -10.78315 -10.58274 -10.40968 -10.37696 -10.00653 -9.92036 -9.51052 -8.89075 -8.51460 -6.14309 -4.18419 0.14724 0.49953 1.80233 2.57231 2.92972 3.29433 3.34569 3.37306 3.41047 3.77782 3.94564 4.17675 4.31459 4.38492 4.56586 4.72667 4.91440 5.06471 5.13076 5.16437 5.23863 5.45951 5.59511 5.71508 5.85851 6.35380 6.69088 7.27653 7.36356 7.79192 8.08896 8.40451 8.77767 8.81364 9.45056 10.96605 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.040501 B = 0.004532 C = 0.004334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.176669 B = 6176.523454 C = 6458.381439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.072 3.928 3 C -0.115 4.115 4 C -0.085 4.085 5 C 0.150 3.850 6 C 0.179 3.821 7 N -0.421 5.421 8 C 0.218 3.782 9 C 0.098 3.902 10 C -0.516 4.516 11 H 0.057 0.943 12 C 0.063 3.937 13 N -0.890 5.890 14 Si 0.904 3.096 15 H -0.277 1.277 16 H -0.283 1.283 17 H -0.273 1.273 18 N -0.386 5.386 19 O 0.076 5.924 20 N -0.182 5.182 21 N -0.232 5.232 22 H 0.087 0.913 23 H 0.081 0.919 24 H 0.085 0.915 25 H 0.159 0.841 26 H 0.163 0.837 27 H 0.056 0.944 28 H 0.051 0.949 29 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.642 11.355 -2.149 22.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.072 4.072 3 C -0.144 4.144 4 C -0.115 4.115 5 C 0.005 3.995 6 C -0.042 4.042 7 N -0.156 5.156 8 C -0.053 4.053 9 C 0.059 3.941 10 C -0.556 4.556 11 H 0.075 0.925 12 C -0.139 4.139 13 N -0.528 5.528 14 Si 0.731 3.269 15 H -0.203 1.203 16 H -0.209 1.209 17 H -0.198 1.198 18 N -0.092 5.092 19 O 0.018 5.982 20 N -0.027 5.027 21 N -0.077 5.077 22 H 0.105 0.895 23 H 0.100 0.900 24 H 0.104 0.896 25 H 0.177 0.823 26 H 0.181 0.819 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -18.677 9.612 -2.190 21.119 hybrid contribution 0.329 1.431 0.966 1.758 sum -18.347 11.043 -1.223 21.449 Atomic orbital electron populations 1.20725 0.87008 1.04356 1.03911 1.23154 0.99494 0.90632 0.93920 1.22237 0.93809 1.00172 0.98166 1.22467 0.95654 0.98516 0.94902 1.19265 0.87979 0.91991 1.00286 1.25369 0.92679 0.83431 1.02705 1.72280 1.02436 1.25359 1.15550 1.27081 0.94625 0.88821 0.94785 1.17936 0.84615 0.91947 0.99552 1.20816 1.13585 1.30728 0.90431 0.92517 1.24941 0.95842 0.95273 0.97892 1.69931 1.19466 1.32441 1.30965 0.86396 0.77663 0.78846 0.84001 1.20292 1.20904 1.19834 1.74646 0.97323 1.14764 1.22501 1.85362 1.11116 1.35398 1.66370 1.73452 0.98905 1.24863 1.05513 1.73287 1.00370 1.24349 1.09651 0.89487 0.90002 0.89618 0.82334 0.81930 0.92582 0.93136 0.92464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.54 10.19 36.00 0.37 -0.17 15 2 C 0.07 0.68 6.87 -82.33 -0.57 0.11 15 3 C -0.12 -0.87 9.86 -39.25 -0.39 -1.25 15 4 C -0.09 -0.85 9.88 -38.81 -0.38 -1.24 15 5 C 0.15 2.27 6.83 -82.85 -0.57 1.71 15 6 C 0.18 3.37 8.13 -13.82 -0.11 3.26 15 7 N -0.42 -9.69 11.57 -10.16 -0.12 -9.81 15 8 C 0.22 5.32 7.39 -156.56 -1.16 4.16 15 9 C 0.10 2.66 5.60 -29.04 -0.16 2.49 15 10 C -0.52 -15.01 9.09 -34.44 -0.31 -15.32 15 11 H 0.06 1.66 7.74 -52.48 -0.41 1.25 15 12 C 0.06 1.81 5.46 -17.82 -0.10 1.72 15 13 N -0.89 -26.32 13.29 55.43 0.74 -25.58 15 14 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 15 15 H -0.28 -6.65 7.11 56.52 0.40 -6.25 15 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 15 17 H -0.27 -6.58 7.11 56.52 0.40 -6.18 15 18 N -0.39 -8.63 12.15 31.17 0.38 -8.25 15 19 O 0.08 1.41 11.18 16.72 0.19 1.60 15 20 N -0.18 -3.07 11.47 33.31 0.38 -2.68 15 21 N -0.23 -3.27 11.43 33.63 0.38 -2.89 15 22 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 15 23 H 0.08 0.23 8.09 -51.93 -0.42 -0.19 15 24 H 0.08 0.48 8.14 -51.93 -0.42 0.06 15 25 H 0.16 0.51 8.06 -52.49 -0.42 0.09 15 26 H 0.16 1.16 8.01 -52.49 -0.42 0.74 15 27 H 0.06 1.57 8.14 -51.93 -0.42 1.15 15 28 H 0.05 1.40 8.14 -51.93 -0.42 0.97 15 29 H 0.27 7.37 8.31 -40.82 -0.34 7.03 15 LS Contribution 274.00 15.07 4.13 4.13 Total: -1.00 -33.94 274.00 -4.81 -38.75 By element: Atomic # 1 Polarization: -5.19 SS G_CDS: -2.49 Total: -7.68 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: -3.38 Total: -4.53 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: 1.76 Total: -49.21 kcal Atomic # 8 Polarization: 1.41 SS G_CDS: 0.19 Total: 1.60 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -33.94 -4.81 -38.75 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259887052.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.758 kcal (2) G-P(sol) polarization free energy of solvation -33.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds