Wall clock time and date at job start Mon Mar 30 2020 04:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38658 * 119.95678 * 2 1 4 4 C 1.38716 * 118.07770 * 180.26586 * 3 2 1 5 5 C 1.39829 * 117.88517 * 359.46096 * 4 3 2 6 6 C 1.47965 * 120.19092 * 180.25728 * 5 4 3 7 7 N 1.32035 * 126.66441 * 179.71455 * 6 5 4 8 8 C 1.34206 * 105.55521 * 179.89343 * 7 6 5 9 9 C 1.50699 * 126.19195 * 180.11479 * 8 7 6 10 10 C 1.50699 * 109.47327 * 270.28090 * 9 8 7 11 11 H 1.08005 * 119.99724 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00173 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00246 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99849 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47154 * 90.00258 * 14 12 10 16 16 H 1.48510 * 109.46937 * 210.00136 * 14 12 10 17 17 H 1.48496 * 109.47308 * 330.00089 * 14 12 10 18 18 N 1.30037 * 107.61971 * 0.37069 * 8 7 6 19 19 O 1.21294 * 110.46217 * 359.76517 * 18 8 7 20 20 N 1.32842 * 119.61679 * 0.27529 * 5 4 3 21 21 N 1.28343 * 122.01429 * 0.02562 * 20 5 4 22 22 H 1.08998 * 109.47199 * 270.28396 * 1 2 3 23 23 H 1.08996 * 109.47147 * 30.28844 * 1 2 3 24 24 H 1.09003 * 109.47197 * 150.28525 * 1 2 3 25 25 H 1.07997 * 120.96588 * 0.02562 * 3 2 1 26 26 H 1.08002 * 121.05980 * 179.74098 * 4 3 2 27 27 H 1.09005 * 109.46928 * 30.27657 * 9 8 7 28 28 H 1.08999 * 109.47577 * 150.27725 * 9 8 7 29 29 H 0.96995 * 120.00510 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1993 1.2013 0.0000 4 6 3.5857 1.1559 -0.0057 5 6 4.1989 -0.1008 0.0006 6 6 5.6746 -0.2087 0.0007 7 7 6.3836 -1.3225 0.0115 8 6 7.6676 -0.9318 0.0043 9 6 8.8730 -1.8363 0.0092 10 6 9.2746 -2.1303 1.4316 11 1 8.7134 -1.7045 2.2502 12 6 10.3585 -2.9430 1.6879 13 7 11.0416 -3.4620 0.6912 14 14 10.8567 -3.3068 3.4511 15 1 10.1480 -4.5227 3.9249 16 1 12.3232 -3.5324 3.5146 17 1 10.4952 -2.1548 4.3155 18 7 7.6833 0.3684 -0.0022 19 8 6.5521 0.8062 -0.0043 20 7 3.4488 -1.1972 0.0060 21 7 2.1665 -1.1443 0.0053 22 1 -0.3633 0.0051 1.0276 23 1 -0.3633 0.8874 -0.5183 24 1 -0.3634 -0.8925 -0.5094 25 1 1.6745 2.1452 0.0004 26 1 4.1730 2.0623 -0.0101 27 1 8.6294 -2.7689 -0.4998 28 1 9.6978 -1.3453 -0.5072 29 1 11.8044 -4.0334 0.8715 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259887052.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:41 Heat of formation + Delta-G solvation = 95.878446 kcal Electronic energy + Delta-G solvation = -16358.353582 eV Core-core repulsion = 13477.457877 eV Total energy + Delta-G solvation = -2880.895705 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -46.68630 -42.15095 -37.38501 -35.90366 -35.03874 -34.70278 -33.03596 -30.75213 -29.34154 -26.68196 -26.10870 -24.53267 -24.25926 -22.47924 -19.49097 -19.31570 -18.66652 -18.48445 -17.60769 -16.74148 -16.54225 -16.34744 -15.02898 -14.70903 -14.57885 -14.20600 -14.01454 -13.93412 -13.49222 -13.14327 -13.13004 -12.73752 -12.71104 -12.35594 -12.18957 -12.06888 -12.05480 -11.40883 -11.16002 -10.79875 -10.72396 -10.39015 -8.34618 -6.48395 -0.90663 -0.27761 0.41678 1.19777 1.24016 1.36990 1.38637 1.49767 2.33258 2.40361 2.51943 2.96696 3.05600 3.10608 3.33449 3.55797 3.79795 3.89078 4.05212 4.50109 4.58533 4.66643 4.82631 4.91147 4.98998 5.04090 5.10493 5.20090 5.35322 5.54000 5.88777 6.56109 7.11487 7.19738 7.48809 8.77105 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.040501 B = 0.004532 C = 0.004334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.176669 B = 6176.523454 C = 6458.381439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.077 3.923 3 C -0.088 4.088 4 C -0.075 4.075 5 C 0.115 3.885 6 C 0.208 3.792 7 N -0.466 5.466 8 C 0.195 3.805 9 C 0.108 3.892 10 C -0.540 4.540 11 H 0.047 0.953 12 C 0.013 3.987 13 N -0.920 5.920 14 Si 0.975 3.025 15 H -0.270 1.270 16 H -0.269 1.269 17 H -0.269 1.269 18 N -0.397 5.397 19 O 0.106 5.894 20 N -0.232 5.232 21 N -0.271 5.271 22 H 0.103 0.897 23 H 0.120 0.880 24 H 0.078 0.922 25 H 0.219 0.781 26 H 0.196 0.804 27 H 0.033 0.967 28 H 0.034 0.966 29 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.255 13.822 -1.146 26.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.067 4.067 3 C -0.116 4.116 4 C -0.104 4.104 5 C -0.031 4.031 6 C -0.013 4.013 7 N -0.201 5.201 8 C -0.076 4.076 9 C 0.069 3.931 10 C -0.579 4.579 11 H 0.066 0.934 12 C -0.187 4.187 13 N -0.558 5.558 14 Si 0.798 3.202 15 H -0.195 1.195 16 H -0.194 1.194 17 H -0.194 1.194 18 N -0.101 5.101 19 O 0.044 5.956 20 N -0.077 5.077 21 N -0.115 5.115 22 H 0.121 0.879 23 H 0.138 0.862 24 H 0.097 0.903 25 H 0.236 0.764 26 H 0.213 0.787 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -21.285 12.056 -1.199 24.491 hybrid contribution 0.838 0.785 0.594 1.293 sum -20.447 12.841 -0.605 24.152 Atomic orbital electron populations 1.20946 0.83748 1.05914 1.05308 1.23982 1.01524 0.90246 0.90913 1.22893 0.92544 1.01635 0.94531 1.22864 0.97106 0.97192 0.93227 1.19304 0.85665 0.94218 1.03903 1.26001 0.94175 0.82022 0.99093 1.72200 1.02169 1.27451 1.18234 1.26497 0.94587 0.89244 0.97314 1.17536 0.85546 0.91478 0.98535 1.21034 1.14290 1.31615 0.90974 0.93431 1.25885 0.95472 0.94626 1.02677 1.70032 1.19843 1.32671 1.33271 0.85305 0.77909 0.78785 0.78191 1.19486 1.19394 1.19359 1.74550 0.99009 1.13815 1.22712 1.85305 1.10184 1.34575 1.65564 1.73294 1.00513 1.26717 1.07142 1.73210 0.99269 1.27144 1.11879 0.87890 0.86194 0.90338 0.76446 0.78728 0.94875 0.94791 0.91861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.63 10.19 71.23 0.73 0.10 15 2 C 0.08 1.20 6.87 42.62 0.29 1.49 15 3 C -0.09 -0.86 9.86 22.48 0.22 -0.64 15 4 C -0.07 -1.23 9.88 22.77 0.23 -1.00 15 5 C 0.12 3.42 6.83 41.96 0.29 3.70 15 6 C 0.21 7.91 8.13 87.36 0.71 8.62 15 7 N -0.47 -22.47 11.57 -302.83 -3.50 -25.98 15 8 C 0.20 9.98 7.39 138.53 1.02 11.00 15 9 C 0.11 6.20 5.60 29.10 0.16 6.37 15 10 C -0.54 -32.67 9.09 25.60 0.23 -32.44 15 11 H 0.05 2.89 7.74 -2.91 -0.02 2.86 15 12 C 0.01 0.78 5.46 84.65 0.46 1.25 15 13 N -0.92 -55.75 13.29 21.45 0.28 -55.47 15 14 Si 0.98 45.50 29.54 68.60 2.03 47.52 15 15 H -0.27 -12.20 7.11 99.48 0.71 -11.50 15 16 H -0.27 -11.87 7.11 99.48 0.71 -11.17 15 17 H -0.27 -12.27 7.11 99.48 0.71 -11.57 15 18 N -0.40 -18.18 12.15 -58.74 -0.71 -18.89 15 19 O 0.11 3.92 11.18 69.90 0.78 4.71 15 20 N -0.23 -7.92 11.47 -48.53 -0.56 -8.48 15 21 N -0.27 -7.43 11.43 -47.53 -0.54 -7.97 15 22 H 0.10 0.41 8.14 -2.39 -0.02 0.39 15 23 H 0.12 -0.10 8.09 -2.39 -0.02 -0.12 15 24 H 0.08 0.66 8.14 -2.39 -0.02 0.64 15 25 H 0.22 -0.40 8.06 -2.91 -0.02 -0.42 15 26 H 0.20 1.85 8.01 -2.91 -0.02 1.82 15 27 H 0.03 2.00 8.14 -2.38 -0.02 1.98 15 28 H 0.03 2.01 8.14 -2.39 -0.02 1.99 15 29 H 0.27 15.29 8.31 -92.71 -0.77 14.52 15 Total: -1.00 -79.97 274.00 3.30 -76.66 By element: Atomic # 1 Polarization: -11.74 SS G_CDS: 1.18 Total: -10.55 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: 4.34 Total: -1.55 kcal Atomic # 7 Polarization: -111.76 SS G_CDS: -5.03 Total: -116.79 kcal Atomic # 8 Polarization: 3.92 SS G_CDS: 0.78 Total: 4.71 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.52 kcal Total: -79.97 3.30 -76.66 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259887052.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.543 kcal (2) G-P(sol) polarization free energy of solvation -79.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds