Wall clock time and date at job start Mon Mar 30 2020 04:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.32213 * 120.52596 * 2 1 4 4 C 1.31820 * 120.94749 * 179.97438 * 3 2 1 5 5 N 1.31854 * 122.03389 * 359.97438 * 4 3 2 6 6 C 1.32184 * 120.93928 * 359.70261 * 5 4 3 7 7 C 1.39680 * 120.52507 * 179.97438 * 2 1 3 8 8 C 1.48426 * 120.90912 * 0.02562 * 7 2 1 9 9 N 1.30753 * 126.41848 * 0.02562 * 8 7 2 10 10 O 1.21281 * 110.10406 * 179.97438 * 9 8 7 11 11 C 1.33676 * 110.02407 * 0.02562 * 10 9 8 12 12 C 1.50696 * 126.43868 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.47567 * 269.97836 * 12 11 10 14 14 H 1.08004 * 119.99506 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00206 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99818 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99946 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47070 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47023 * 120.00039 * 17 15 13 20 20 H 1.48497 * 109.47369 * 239.99831 * 17 15 13 21 21 N 1.30975 * 107.12103 * 359.73126 * 11 10 9 22 22 H 1.08999 * 109.47242 * 270.02926 * 1 2 3 23 23 H 1.09004 * 109.46839 * 30.02812 * 1 2 3 24 24 H 1.08997 * 109.47005 * 150.01946 * 1 2 3 25 25 H 1.08001 * 118.98193 * 180.02562 * 4 3 2 26 26 H 1.08004 * 120.52050 * 180.28805 * 6 5 4 27 27 H 1.08999 * 109.47178 * 29.98085 * 12 11 10 28 28 H 1.08999 * 109.47036 * 149.97666 * 12 11 10 29 29 H 0.96998 * 119.99835 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1785 1.1389 0.0000 4 6 3.4966 1.1486 0.0005 5 7 4.2042 0.0360 0.0015 6 6 3.6123 -1.1459 0.0080 7 6 2.2164 -1.2032 0.0005 8 6 1.5067 -2.5068 0.0006 9 7 0.2114 -2.6854 -0.0004 10 8 -0.0460 -3.8706 -0.0006 11 6 1.0842 -4.5844 0.0008 12 6 1.1936 -6.0874 0.0016 13 6 1.2293 -6.5878 1.4226 14 1 1.1784 -5.8874 2.2432 15 6 1.3282 -7.9397 1.6752 16 7 1.3907 -8.7925 0.6760 17 14 1.3731 -8.5598 3.4367 18 1 1.2880 -7.4075 4.3695 19 1 0.2240 -9.4710 3.6702 20 1 2.6425 -9.2941 3.6708 21 7 2.0786 -3.7320 -0.0040 22 1 -0.3634 0.0005 1.0276 23 1 -0.3633 0.8898 -0.5143 24 1 -0.3633 -0.8901 -0.5135 25 1 4.0130 2.0972 0.0009 26 1 4.1985 -2.0529 0.0135 27 1 0.3327 -6.5147 -0.5125 28 1 2.1079 -6.3854 -0.5116 29 1 1.4599 -9.7435 0.8537 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259887303.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:06 Heat of formation + Delta-G solvation = 109.487310 kcal Electronic energy + Delta-G solvation = -16685.286928 eV Core-core repulsion = 13804.981348 eV Total energy + Delta-G solvation = -2880.305580 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -44.94965 -41.10726 -35.65659 -34.74454 -34.05260 -32.80986 -31.35675 -28.94359 -28.42264 -25.42958 -24.13898 -23.03632 -22.71953 -20.93307 -17.75759 -17.66403 -17.10023 -16.81640 -16.37746 -15.44659 -15.17086 -14.82181 -13.80907 -13.43012 -13.24537 -13.07443 -12.81987 -12.56131 -12.01678 -11.73202 -11.45242 -11.28086 -11.08548 -10.87917 -10.66907 -10.50703 -10.25785 -10.13837 -9.50663 -9.39020 -8.87098 -8.69206 -6.32642 -4.38939 0.39608 0.91456 1.86688 2.82900 3.18604 3.26917 3.31351 3.49568 3.68795 3.73937 3.90453 4.02522 4.25707 4.32593 4.36829 5.01713 5.08264 5.22617 5.47117 5.47834 5.61726 5.77134 6.04181 6.24823 6.34641 6.46248 6.82875 7.01372 7.07331 7.60545 7.82202 7.90187 8.61596 8.67855 9.26800 10.77704 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.037076 B = 0.005061 C = 0.004824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.018992 B = 5531.334614 C = 5803.066521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.206 3.794 3 N -0.523 5.523 4 C 0.300 3.700 5 N -0.524 5.524 6 C 0.194 3.806 7 C -0.113 4.113 8 C 0.203 3.797 9 N -0.391 5.391 10 O 0.066 5.934 11 C 0.251 3.749 12 C 0.099 3.901 13 C -0.526 4.526 14 H 0.062 0.938 15 C 0.067 3.933 16 N -0.886 5.886 17 Si 0.907 3.093 18 H -0.271 1.271 19 H -0.280 1.280 20 H -0.280 1.280 21 N -0.500 5.500 22 H 0.088 0.912 23 H 0.081 0.919 24 H 0.106 0.894 25 H 0.200 0.800 26 H 0.182 0.818 27 H 0.061 0.939 28 H 0.072 0.928 29 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.357 13.441 -2.020 13.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.059 3.941 3 N -0.237 5.237 4 C 0.012 3.988 5 N -0.238 5.238 6 C 0.026 3.974 7 C -0.119 4.119 8 C -0.068 4.068 9 N -0.104 5.104 10 O 0.010 5.990 11 C 0.034 3.966 12 C 0.060 3.940 13 C -0.565 4.565 14 H 0.081 0.919 15 C -0.136 4.136 16 N -0.524 5.524 17 Si 0.733 3.267 18 H -0.196 1.196 19 H -0.206 1.206 20 H -0.206 1.206 21 N -0.233 5.233 22 H 0.107 0.893 23 H 0.100 0.900 24 H 0.124 0.876 25 H 0.216 0.784 26 H 0.199 0.801 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.686 14.863 -2.086 15.024 hybrid contribution -0.285 -1.331 0.969 1.671 sum 0.401 13.532 -1.117 13.583 Atomic orbital electron populations 1.21137 0.86941 1.05121 1.04355 1.21894 0.98050 0.86740 0.87461 1.68354 1.10372 1.29386 1.15630 1.25112 0.86776 0.97331 0.89532 1.68530 1.41311 0.98794 1.15170 1.23499 0.90628 0.96693 0.86550 1.19043 0.95141 0.89844 1.07902 1.23299 0.87417 0.93153 1.02951 1.74747 1.16371 0.96582 1.22651 1.85270 1.36114 1.11661 1.65927 1.30142 0.77894 1.00385 0.88214 1.18296 1.01297 0.74026 1.00358 1.20813 1.53358 0.92368 0.89952 0.91939 1.24922 0.94234 0.96341 0.98138 1.69924 1.48499 1.02924 1.31006 0.86291 0.77921 0.78926 0.83520 1.19572 1.20571 1.20576 1.72054 1.30222 0.97499 1.23543 0.89349 0.90031 0.87625 0.78386 0.80060 0.92102 0.91067 0.92215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.50 9.46 36.00 0.34 -1.16 15 2 C 0.21 3.00 6.86 -81.89 -0.56 2.43 15 3 N -0.52 -7.08 10.36 -10.54 -0.11 -7.19 15 4 C 0.30 3.62 12.27 -92.08 -1.13 2.49 15 5 N -0.52 -7.19 10.43 -14.31 -0.15 -7.34 15 6 C 0.19 2.87 11.00 -16.85 -0.19 2.68 15 7 C -0.11 -1.81 5.91 -104.61 -0.62 -2.43 15 8 C 0.20 3.75 7.71 -156.12 -1.20 2.55 15 9 N -0.39 -7.24 8.91 30.96 0.28 -6.96 15 10 O 0.07 1.32 11.29 18.02 0.20 1.52 15 11 C 0.25 5.30 7.69 -12.99 -0.10 5.20 15 12 C 0.10 2.29 5.60 -29.04 -0.16 2.12 15 13 C -0.53 -13.55 9.09 -34.44 -0.31 -13.86 15 14 H 0.06 1.63 7.74 -52.48 -0.41 1.22 15 15 C 0.07 1.75 5.46 -17.82 -0.10 1.65 15 16 N -0.89 -23.85 13.29 55.43 0.74 -23.12 15 17 Si 0.91 20.21 29.54 -169.99 -5.02 15.19 15 18 H -0.27 -6.04 7.11 56.52 0.40 -5.64 15 19 H -0.28 -6.15 7.11 56.52 0.40 -5.75 15 20 H -0.28 -6.19 7.11 56.52 0.40 -5.79 15 21 N -0.50 -10.23 11.36 -9.89 -0.11 -10.35 15 22 H 0.09 1.07 8.14 -51.93 -0.42 0.65 15 23 H 0.08 0.88 8.14 -51.93 -0.42 0.46 15 24 H 0.11 1.48 5.34 -51.93 -0.28 1.20 15 25 H 0.20 1.57 8.06 -52.49 -0.42 1.15 15 26 H 0.18 2.56 7.97 -52.48 -0.42 2.14 15 27 H 0.06 1.40 8.14 -51.93 -0.42 0.97 15 28 H 0.07 1.70 8.14 -51.93 -0.42 1.28 15 29 H 0.27 6.80 8.31 -40.82 -0.34 6.46 15 LS Contribution 267.52 15.07 4.03 4.03 Total: -1.00 -27.66 267.52 -6.53 -34.19 By element: Atomic # 1 Polarization: 0.71 SS G_CDS: -2.35 Total: -1.64 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: -4.03 Total: 1.67 kcal Atomic # 7 Polarization: -55.60 SS G_CDS: 0.64 Total: -54.95 kcal Atomic # 8 Polarization: 1.32 SS G_CDS: 0.20 Total: 1.52 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -27.66 -6.53 -34.19 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259887303.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.677 kcal (2) G-P(sol) polarization free energy of solvation -27.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds