Wall clock time and date at job start Mon Mar 30 2020 04:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.32213 * 120.52596 * 2 1 4 4 C 1.31820 * 120.94749 * 179.97438 * 3 2 1 5 5 N 1.31854 * 122.03389 * 359.97438 * 4 3 2 6 6 C 1.32184 * 120.93928 * 359.70261 * 5 4 3 7 7 C 1.39680 * 120.52507 * 179.97438 * 2 1 3 8 8 C 1.48426 * 120.90912 * 0.02562 * 7 2 1 9 9 N 1.30753 * 126.41848 * 0.02562 * 8 7 2 10 10 O 1.21281 * 110.10406 * 179.97438 * 9 8 7 11 11 C 1.33676 * 110.02407 * 0.02562 * 10 9 8 12 12 C 1.50696 * 126.43868 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.47567 * 269.97836 * 12 11 10 14 14 H 1.08004 * 119.99506 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00206 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99818 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99946 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47070 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47023 * 120.00039 * 17 15 13 20 20 H 1.48497 * 109.47369 * 239.99831 * 17 15 13 21 21 N 1.30975 * 107.12103 * 359.73126 * 11 10 9 22 22 H 1.08999 * 109.47242 * 270.02926 * 1 2 3 23 23 H 1.09004 * 109.46839 * 30.02812 * 1 2 3 24 24 H 1.08997 * 109.47005 * 150.01946 * 1 2 3 25 25 H 1.08001 * 118.98193 * 180.02562 * 4 3 2 26 26 H 1.08004 * 120.52050 * 180.28805 * 6 5 4 27 27 H 1.08999 * 109.47178 * 29.98085 * 12 11 10 28 28 H 1.08999 * 109.47036 * 149.97666 * 12 11 10 29 29 H 0.96998 * 119.99835 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1785 1.1389 0.0000 4 6 3.4966 1.1486 0.0005 5 7 4.2042 0.0360 0.0015 6 6 3.6123 -1.1459 0.0080 7 6 2.2164 -1.2032 0.0005 8 6 1.5067 -2.5068 0.0006 9 7 0.2114 -2.6854 -0.0004 10 8 -0.0460 -3.8706 -0.0006 11 6 1.0842 -4.5844 0.0008 12 6 1.1936 -6.0874 0.0016 13 6 1.2293 -6.5878 1.4226 14 1 1.1784 -5.8874 2.2432 15 6 1.3282 -7.9397 1.6752 16 7 1.3907 -8.7925 0.6760 17 14 1.3731 -8.5598 3.4367 18 1 1.2880 -7.4075 4.3695 19 1 0.2240 -9.4710 3.6702 20 1 2.6425 -9.2941 3.6708 21 7 2.0786 -3.7320 -0.0040 22 1 -0.3634 0.0005 1.0276 23 1 -0.3633 0.8898 -0.5143 24 1 -0.3633 -0.8901 -0.5135 25 1 4.0130 2.0972 0.0009 26 1 4.1985 -2.0529 0.0135 27 1 0.3327 -6.5147 -0.5125 28 1 2.1079 -6.3854 -0.5116 29 1 1.4599 -9.7435 0.8537 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259887303.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:05 Heat of formation + Delta-G solvation = 92.537126 kcal Electronic energy + Delta-G solvation = -16686.021943 eV Core-core repulsion = 13804.981348 eV Total energy + Delta-G solvation = -2881.040596 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -46.48331 -42.19401 -37.13883 -36.12286 -35.54185 -34.36470 -32.81294 -30.44656 -29.78665 -26.66717 -25.96951 -24.21774 -24.14431 -22.43476 -19.33633 -18.96504 -18.48172 -18.23783 -17.88587 -16.84339 -16.63174 -16.26369 -15.15424 -14.85764 -14.50100 -14.41130 -14.19086 -14.01743 -13.54604 -13.22257 -13.04422 -12.82053 -12.62939 -12.41005 -12.18540 -11.96821 -11.93959 -11.67764 -11.13576 -10.67309 -10.47436 -10.25877 -8.30992 -6.43743 -0.76980 -0.20002 0.30635 1.34832 1.43188 1.46300 1.56944 1.90140 2.32691 2.41000 2.58513 2.76451 2.94506 3.06171 3.12292 3.20691 3.79791 4.07306 4.21531 4.47123 4.55683 4.67451 4.70310 4.84774 5.00333 5.11082 5.18347 5.29272 5.59530 5.72904 5.87748 6.61112 6.84247 7.10435 7.25340 8.79911 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.037076 B = 0.005061 C = 0.004824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.018992 B = 5531.334614 C = 5803.066521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.210 3.790 3 N -0.527 5.527 4 C 0.311 3.689 5 N -0.532 5.532 6 C 0.198 3.802 7 C -0.143 4.143 8 C 0.211 3.789 9 N -0.386 5.386 10 O 0.060 5.940 11 C 0.244 3.756 12 C 0.108 3.892 13 C -0.542 4.542 14 H 0.054 0.946 15 C 0.023 3.977 16 N -0.915 5.915 17 Si 0.968 3.032 18 H -0.271 1.271 19 H -0.272 1.272 20 H -0.275 1.275 21 N -0.510 5.510 22 H 0.095 0.905 23 H 0.102 0.898 24 H 0.091 0.909 25 H 0.243 0.757 26 H 0.182 0.818 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.666 15.076 -1.356 15.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.062 3.938 3 N -0.242 5.242 4 C 0.025 3.975 5 N -0.246 5.246 6 C 0.030 3.970 7 C -0.149 4.149 8 C -0.060 4.060 9 N -0.100 5.100 10 O 0.006 5.994 11 C 0.025 3.975 12 C 0.069 3.931 13 C -0.581 4.581 14 H 0.072 0.928 15 C -0.178 4.178 16 N -0.553 5.553 17 Si 0.792 3.208 18 H -0.196 1.196 19 H -0.197 1.197 20 H -0.200 1.200 21 N -0.244 5.244 22 H 0.113 0.887 23 H 0.121 0.879 24 H 0.109 0.891 25 H 0.259 0.741 26 H 0.199 0.801 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.980 16.501 -1.429 16.591 hybrid contribution -0.328 -1.669 0.722 1.848 sum 0.652 14.832 -0.707 14.863 Atomic orbital electron populations 1.21141 0.85924 1.05392 1.04799 1.22152 0.98870 0.86516 0.86249 1.68491 1.11018 1.28510 1.16146 1.26030 0.86496 0.98352 0.86646 1.68638 1.41346 0.98797 1.15782 1.23552 0.90252 0.97410 0.85800 1.19109 0.95680 0.89186 1.10971 1.23670 0.87316 0.93489 1.01551 1.74787 1.16426 0.95688 1.23082 1.85264 1.35724 1.12164 1.66215 1.29648 0.78634 0.99816 0.89359 1.17980 1.00492 0.75514 0.99126 1.21042 1.53506 0.92673 0.90881 0.92770 1.25686 0.93754 0.96464 1.01852 1.70001 1.49109 1.03343 1.32823 0.85350 0.78204 0.78292 0.78930 1.19589 1.19724 1.20029 1.72025 1.30369 0.98340 1.23646 0.88686 0.87897 0.89070 0.74117 0.80081 0.92412 0.92311 0.91826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.73 9.46 71.23 0.67 -2.06 15 2 C 0.21 5.72 6.86 42.85 0.29 6.01 15 3 N -0.53 -12.79 10.36 -187.27 -1.94 -14.73 15 4 C 0.31 6.51 12.27 180.86 2.22 8.73 15 5 N -0.53 -13.40 10.43 -199.19 -2.08 -15.48 15 6 C 0.20 5.62 11.00 85.00 0.93 6.56 15 7 C -0.14 -4.44 5.91 -19.86 -0.12 -4.56 15 8 C 0.21 7.75 7.71 137.30 1.06 8.81 15 9 N -0.39 -14.23 8.91 -59.16 -0.53 -14.76 15 10 O 0.06 2.39 11.29 74.56 0.84 3.24 15 11 C 0.24 10.45 7.69 88.36 0.68 11.13 15 12 C 0.11 5.11 5.60 29.10 0.16 5.27 15 13 C -0.54 -28.30 9.09 25.60 0.23 -28.07 15 14 H 0.05 2.86 7.74 -2.91 -0.02 2.83 15 15 C 0.02 1.22 5.46 84.65 0.46 1.68 15 16 N -0.91 -49.52 13.29 21.45 0.28 -49.24 15 17 Si 0.97 41.21 29.54 68.60 2.03 43.24 15 18 H -0.27 -11.46 7.11 99.48 0.71 -10.75 15 19 H -0.27 -11.17 7.11 99.48 0.71 -10.47 15 20 H -0.27 -11.42 7.11 99.48 0.71 -10.71 15 21 N -0.51 -21.05 11.36 -302.53 -3.44 -24.49 15 22 H 0.09 2.13 8.14 -2.39 -0.02 2.11 15 23 H 0.10 1.97 8.14 -2.39 -0.02 1.95 15 24 H 0.09 2.46 5.34 -2.39 -0.01 2.45 15 25 H 0.24 2.72 8.06 -2.91 -0.02 2.70 15 26 H 0.18 5.04 7.97 -2.91 -0.02 5.02 15 27 H 0.06 2.74 8.14 -2.39 -0.02 2.72 15 28 H 0.06 2.91 8.14 -2.39 -0.02 2.89 15 29 H 0.27 13.81 8.31 -92.71 -0.77 13.04 15 Total: -1.00 -57.91 267.52 2.96 -54.94 By element: Atomic # 1 Polarization: 2.58 SS G_CDS: 1.19 Total: 3.77 kcal Atomic # 6 Polarization: 6.91 SS G_CDS: 6.60 Total: 13.51 kcal Atomic # 7 Polarization: -111.00 SS G_CDS: -7.70 Total: -118.70 kcal Atomic # 8 Polarization: 2.39 SS G_CDS: 0.84 Total: 3.24 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.24 kcal Total: -57.91 2.96 -54.94 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259887303.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.479 kcal (2) G-P(sol) polarization free energy of solvation -57.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds