Wall clock time and date at job start Mon Mar 30 2020 03:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.39702 * 125.12809 * 2 1 4 4 C 1.30717 * 109.53698 * 179.73890 * 3 2 1 5 5 O 1.35875 * 126.43076 * 180.22983 * 4 3 2 6 6 C 1.46749 * 107.13932 * 0.39159 * 4 3 2 7 7 C 1.41402 * 126.94734 * 179.87822 * 6 4 3 8 8 H 1.08004 * 119.99688 * 206.12664 * 7 6 4 9 9 C 1.39695 * 120.00283 * 26.12799 * 7 6 4 10 10 N 1.31068 * 120.00059 * 26.32937 * 9 7 6 11 11 Si 1.86800 * 120.00156 * 206.33334 * 9 7 6 12 12 H 1.48501 * 109.46742 * 269.99648 * 11 9 7 13 13 H 1.48496 * 109.47035 * 29.99466 * 11 9 7 14 14 H 1.48493 * 109.47231 * 149.99635 * 11 9 7 15 15 C 1.34352 * 125.13434 * 179.97438 * 2 1 3 16 16 Br 1.89109 * 126.25671 * 359.97438 * 15 2 1 17 17 H 1.09001 * 109.47102 * 269.99741 * 1 2 3 18 18 H 1.08994 * 109.47267 * 30.00563 * 1 2 3 19 19 H 1.09002 * 109.46655 * 150.00392 * 1 2 3 20 20 H 0.96706 * 113.99309 * 269.38783 * 5 4 3 21 21 H 0.97001 * 119.99642 * 5.74958 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2689 1.1426 0.0000 4 6 3.5280 0.7913 0.0056 5 8 4.5990 1.6274 0.0118 6 6 3.5676 -0.6757 0.0000 7 6 4.7203 -1.4948 0.0008 8 1 4.6754 -2.4905 -0.4152 9 6 5.9170 -1.0161 0.5395 10 7 5.8941 -0.0923 1.4690 11 14 7.5500 -1.6926 -0.0648 12 1 7.9361 -2.8649 0.7609 13 1 7.4185 -2.1086 -1.4842 14 1 8.5933 -0.6421 0.0485 15 6 2.2382 -1.0987 0.0005 16 35 1.6348 -2.8910 0.0020 17 1 -0.3633 0.0000 1.0277 18 1 -0.3633 0.8899 -0.5139 19 1 -0.3633 -0.8901 -0.5138 20 1 4.9190 1.8630 -0.8698 21 1 5.0475 0.1992 1.8422 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259904246.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:58 Heat of formation + Delta-G solvation = 29.955980 kcal Electronic energy + Delta-G solvation = -11011.993929 eV Core-core repulsion = 8743.253230 eV Total energy + Delta-G solvation = -2268.740699 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 245.974 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.45272 -36.10186 -33.63364 -31.40828 -30.55045 -28.21323 -25.91733 -23.81884 -20.19353 -19.56906 -17.75655 -16.31355 -15.31560 -14.54047 -13.96318 -13.56153 -13.17676 -12.91691 -12.01015 -11.68118 -11.51833 -11.00197 -10.78116 -10.29725 -10.13655 -10.06441 -9.46003 -8.84998 -8.73583 -7.92422 -7.35417 -6.98512 -4.13736 2.56996 2.79428 3.20123 3.28101 3.46724 3.57596 3.86900 4.19148 5.11965 5.25790 5.51266 5.72496 5.88763 6.52576 6.96414 7.11252 7.87127 8.11612 8.16935 8.55016 8.78279 8.88614 9.07174 10.32514 Molecular weight = 245.97amu Principal moments of inertia in cm(-1) A = 0.029236 B = 0.012578 C = 0.009142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.497478 B = 2225.500147 C = 3062.056598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.119 3.881 2 N -0.367 5.367 3 N -0.295 5.295 4 C 0.190 3.810 5 O -0.441 6.441 6 C 0.025 3.975 7 C -0.514 4.514 8 H 0.078 0.922 9 C 0.038 3.962 10 N -0.780 5.780 11 Si 1.067 2.933 12 H -0.281 1.281 13 H -0.279 1.279 14 H -0.276 1.276 15 C -0.119 4.119 16 Br -0.036 7.036 17 H 0.055 0.945 18 H 0.073 0.927 19 H 0.075 0.925 20 H 0.374 0.626 21 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.955 -3.421 -3.572 7.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 N -0.165 5.165 3 N -0.130 5.130 4 C -0.021 4.021 5 O -0.241 6.241 6 C 0.012 3.988 7 C -0.545 4.545 8 H 0.096 0.904 9 C -0.184 4.184 10 N -0.403 5.403 11 Si 0.892 3.108 12 H -0.207 1.207 13 H -0.204 1.204 14 H -0.201 1.201 15 C -0.313 4.313 16 Br 0.045 6.955 17 H 0.073 0.927 18 H 0.092 0.908 19 H 0.094 0.906 20 H 0.227 0.773 21 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.395 -2.964 -2.751 6.742 hybrid contribution -1.136 -0.333 -0.637 1.344 sum -6.531 -3.297 -3.388 8.062 Atomic orbital electron populations 1.21453 0.76403 1.02819 1.01715 1.46451 1.04078 1.00984 1.64982 1.76317 1.03234 1.08471 1.24952 1.21139 0.85244 0.88927 1.06814 1.84993 1.42105 1.65577 1.31417 1.19085 0.90793 0.90042 0.98890 1.19628 0.93897 1.02162 1.38778 0.90413 1.26742 1.03768 0.94459 0.93472 1.70408 1.33186 1.20873 1.15854 0.83616 0.74016 0.76526 0.76662 1.20663 1.20398 1.20146 1.21680 0.91665 0.83944 1.34002 1.96296 1.88976 1.11602 1.98627 0.92656 0.90811 0.90604 0.77322 0.89266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.01 11.19 59.85 0.67 2.68 14 2 N -0.37 -8.39 3.96 -65.40 -0.26 -8.65 14 3 N -0.30 -7.32 12.44 31.92 0.40 -6.92 14 4 C 0.19 4.90 7.58 -14.59 -0.11 4.79 14 5 O -0.44 -10.60 11.35 -19.35 -0.22 -10.82 14 6 C 0.02 0.66 5.49 -104.78 -0.57 0.09 14 7 C -0.51 -13.78 9.07 -37.83 -0.34 -14.13 14 8 H 0.08 2.07 7.97 -52.48 -0.42 1.65 14 9 C 0.04 0.99 5.00 -17.33 -0.09 0.91 14 10 N -0.78 -21.47 12.01 55.54 0.67 -20.80 14 11 Si 1.07 22.16 30.00 -169.99 -5.10 17.06 14 12 H -0.28 -5.64 7.11 56.52 0.40 -5.24 14 13 H -0.28 -5.55 7.11 56.52 0.40 -5.15 14 14 H -0.28 -5.68 7.11 56.52 0.40 -5.28 14 15 C -0.12 -2.90 7.45 -15.97 -0.12 -3.02 14 16 Br -0.04 -0.73 33.04 -68.01 -2.25 -2.98 14 17 H 0.05 0.86 8.14 -51.93 -0.42 0.44 14 18 H 0.07 1.10 8.14 -51.93 -0.42 0.68 14 19 H 0.08 1.15 7.56 -51.93 -0.39 0.76 14 20 H 0.37 7.19 9.06 45.56 0.41 7.60 14 21 H 0.29 8.59 6.71 -40.82 -0.27 8.32 14 LS Contribution 217.47 15.07 3.28 3.28 Total: -1.00 -30.39 217.47 -4.36 -34.75 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: -0.31 Total: 3.77 kcal Atomic # 6 Polarization: -8.12 SS G_CDS: -0.56 Total: -8.68 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: 0.81 Total: -36.38 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: -0.22 Total: -10.82 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.10 Total: 17.06 kcal Atomic # 35 Polarization: -0.73 SS G_CDS: -2.25 Total: -2.98 kcal Total LS contribution 3.28 Total: 3.28 kcal Total: -30.39 -4.36 -34.75 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259904246.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.707 kcal (2) G-P(sol) polarization free energy of solvation -30.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds