Wall clock time and date at job start Mon Mar 30 2020 03:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.39702 * 125.12809 * 2 1 4 4 C 1.30717 * 109.53698 * 179.73890 * 3 2 1 5 5 O 1.35875 * 126.43076 * 180.22983 * 4 3 2 6 6 C 1.46749 * 107.13932 * 0.39159 * 4 3 2 7 7 C 1.41402 * 126.94734 * 179.87822 * 6 4 3 8 8 H 1.08004 * 119.99688 * 206.12664 * 7 6 4 9 9 C 1.39695 * 120.00283 * 26.12799 * 7 6 4 10 10 N 1.31068 * 120.00059 * 26.32937 * 9 7 6 11 11 Si 1.86800 * 120.00156 * 206.33334 * 9 7 6 12 12 H 1.48501 * 109.46742 * 269.99648 * 11 9 7 13 13 H 1.48496 * 109.47035 * 29.99466 * 11 9 7 14 14 H 1.48493 * 109.47231 * 149.99635 * 11 9 7 15 15 C 1.34352 * 125.13434 * 179.97438 * 2 1 3 16 16 Br 1.89109 * 126.25671 * 359.97438 * 15 2 1 17 17 H 1.09001 * 109.47102 * 269.99741 * 1 2 3 18 18 H 1.08994 * 109.47267 * 30.00563 * 1 2 3 19 19 H 1.09002 * 109.46655 * 150.00392 * 1 2 3 20 20 H 0.96706 * 113.99309 * 269.38783 * 5 4 3 21 21 H 0.97001 * 119.99642 * 5.74958 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2689 1.1426 0.0000 4 6 3.5280 0.7913 0.0056 5 8 4.5990 1.6274 0.0118 6 6 3.5676 -0.6757 0.0000 7 6 4.7203 -1.4948 0.0008 8 1 4.6754 -2.4905 -0.4152 9 6 5.9170 -1.0161 0.5395 10 7 5.8941 -0.0923 1.4690 11 14 7.5500 -1.6926 -0.0648 12 1 7.9361 -2.8649 0.7609 13 1 7.4185 -2.1086 -1.4842 14 1 8.5933 -0.6421 0.0485 15 6 2.2382 -1.0987 0.0005 16 35 1.6348 -2.8910 0.0020 17 1 -0.3633 0.0000 1.0277 18 1 -0.3633 0.8899 -0.5139 19 1 -0.3633 -0.8901 -0.5138 20 1 4.9190 1.8630 -0.8698 21 1 5.0475 0.1992 1.8422 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259904246.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:58 Heat of formation + Delta-G solvation = 6.135203 kcal Electronic energy + Delta-G solvation = -11013.026875 eV Core-core repulsion = 8743.253230 eV Total energy + Delta-G solvation = -2269.773645 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 245.974 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.32520 -37.94892 -35.54356 -33.13652 -32.37134 -30.10415 -27.65274 -25.66268 -22.09503 -21.39665 -19.67067 -18.17447 -17.12587 -16.27685 -15.65140 -15.32392 -15.03548 -14.63086 -13.71485 -13.33785 -13.20083 -12.69448 -12.56303 -11.96666 -11.84969 -11.82360 -11.22665 -10.71669 -10.64037 -9.75242 -9.28401 -8.97413 -6.12827 0.69399 0.92077 1.48313 1.60839 1.87151 1.88930 2.04732 2.48113 3.20567 3.48237 4.05790 4.42258 4.60584 4.69045 5.04370 5.30072 5.90028 6.08453 6.32419 6.64553 6.89778 7.02952 7.14232 8.30082 Molecular weight = 245.97amu Principal moments of inertia in cm(-1) A = 0.029236 B = 0.012578 C = 0.009142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.497478 B = 2225.500147 C = 3062.056598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.361 5.361 3 N -0.308 5.308 4 C 0.171 3.829 5 O -0.451 6.451 6 C -0.017 4.017 7 C -0.541 4.541 8 H 0.072 0.928 9 C 0.006 3.994 10 N -0.806 5.806 11 Si 1.118 2.882 12 H -0.268 1.268 13 H -0.265 1.265 14 H -0.274 1.274 15 C -0.113 4.113 16 Br 0.005 6.995 17 H 0.074 0.926 18 H 0.096 0.904 19 H 0.096 0.904 20 H 0.390 0.610 21 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.693 -4.272 -4.174 8.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.158 5.158 3 N -0.144 5.144 4 C -0.038 4.038 5 O -0.253 6.253 6 C -0.030 4.030 7 C -0.572 4.572 8 H 0.090 0.910 9 C -0.211 4.211 10 N -0.429 5.429 11 Si 0.937 3.063 12 H -0.194 1.194 13 H -0.190 1.190 14 H -0.199 1.199 15 C -0.309 4.309 16 Br 0.086 6.914 17 H 0.092 0.908 18 H 0.115 0.885 19 H 0.115 0.885 20 H 0.246 0.754 21 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.172 -3.799 -3.364 7.990 hybrid contribution -1.180 -0.130 -0.471 1.277 sum -7.352 -3.928 -3.835 9.176 Atomic orbital electron populations 1.21940 0.72971 1.05047 1.03627 1.47044 1.06019 1.00130 1.62637 1.76274 1.03090 1.09370 1.25696 1.21270 0.85762 0.89028 1.07776 1.84930 1.42018 1.65319 1.33033 1.19482 0.92002 0.90867 1.00674 1.19725 0.94959 1.02297 1.40229 0.90978 1.28081 1.06890 0.93723 0.92373 1.70553 1.31499 1.23155 1.17703 0.82973 0.70097 0.76267 0.76954 1.19360 1.18997 1.19920 1.22274 0.91877 0.86317 1.30438 1.96319 1.88257 1.08325 1.98477 0.90773 0.88539 0.88528 0.75450 0.91687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.21 11.19 127.77 1.43 4.64 14 2 N -0.36 -15.89 3.96 -360.83 -1.43 -17.32 14 3 N -0.31 -15.11 12.44 -166.44 -2.07 -17.18 14 4 C 0.17 8.90 7.58 87.08 0.66 9.56 14 5 O -0.45 -22.09 11.35 -92.14 -1.05 -23.14 14 6 C -0.02 -0.92 5.49 -19.97 -0.11 -1.03 14 7 C -0.54 -29.18 9.07 23.40 0.21 -28.97 14 8 H 0.07 3.84 7.97 -2.91 -0.02 3.81 14 9 C 0.01 0.30 5.00 85.16 0.43 0.73 14 10 N -0.81 -45.15 12.01 21.79 0.26 -44.89 14 11 Si 1.12 44.33 30.00 68.60 2.06 46.38 14 12 H -0.27 -10.04 7.11 99.48 0.71 -9.33 14 13 H -0.27 -9.84 7.11 99.48 0.71 -9.13 14 14 H -0.27 -10.68 7.11 99.48 0.71 -9.97 14 15 C -0.11 -5.35 7.45 84.61 0.63 -4.72 14 16 Br 0.00 0.19 33.04 -20.37 -0.67 -0.48 14 17 H 0.07 2.06 8.14 -2.39 -0.02 2.04 14 18 H 0.10 2.55 8.14 -2.39 -0.02 2.54 14 19 H 0.10 2.57 7.56 -2.39 -0.02 2.55 14 20 H 0.39 15.30 9.06 -74.05 -0.67 14.63 14 21 H 0.27 16.38 6.71 -92.71 -0.62 15.75 14 Total: -1.00 -64.64 217.47 1.10 -63.54 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: 0.75 Total: 12.89 kcal Atomic # 6 Polarization: -23.05 SS G_CDS: 3.25 Total: -19.80 kcal Atomic # 7 Polarization: -76.15 SS G_CDS: -3.24 Total: -79.39 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: -1.05 Total: -23.14 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.06 Total: 46.38 kcal Atomic # 35 Polarization: 0.19 SS G_CDS: -0.67 Total: -0.48 kcal Total: -64.64 1.10 -63.54 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259904246.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.673 kcal (2) G-P(sol) polarization free energy of solvation -64.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds