Wall clock time and date at job start Mon Mar 30 2020 04:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30553 * 1 3 3 Si 1.86792 * 120.00141 * 2 1 4 4 H 1.48501 * 109.47119 * 239.99734 * 3 2 1 5 5 H 1.48503 * 109.47201 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47318 * 119.99782 * 3 2 1 7 7 C 1.40589 * 119.99785 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99884 * 179.97438 * 7 2 1 9 9 C 1.39101 * 119.99670 * 0.02562 * 7 2 1 10 10 N 1.31757 * 126.82656 * 359.89943 * 9 7 2 11 11 N 1.39172 * 112.39589 * 179.97438 * 10 9 7 12 12 C 1.34776 * 111.43579 * 0.09252 * 11 10 9 13 13 O 1.21295 * 127.14836 * 180.02562 * 12 11 10 14 14 C 1.51458 * 126.64181 * 179.97438 * 9 7 2 15 15 H 1.09002 * 110.56656 * 298.69363 * 14 9 7 16 16 C 1.52995 * 110.55993 * 61.39403 * 14 9 7 17 17 C 1.50704 * 109.47207 * 182.96622 * 16 14 9 18 18 C 1.38621 * 120.45077 * 125.00099 * 17 16 14 19 19 C 1.38578 * 118.39885 * 179.97438 * 18 17 16 20 20 N 1.32344 * 119.10484 * 0.27991 * 19 18 17 21 21 C 1.31783 * 120.82016 * 359.43130 * 20 19 18 22 22 N 1.31811 * 121.75410 * 0.58090 * 21 20 19 23 23 H 0.97003 * 119.99724 * 0.02562 * 1 2 3 24 24 H 0.97001 * 124.28536 * 180.10934 * 11 10 9 25 25 H 1.09002 * 109.47179 * 62.96773 * 16 14 9 26 26 H 1.09005 * 109.47560 * 302.96567 * 16 14 9 27 27 H 1.08001 * 120.79567 * 359.95603 * 18 17 16 28 28 H 1.08002 * 120.44322 * 179.97438 * 19 18 17 29 29 H 1.08000 * 119.12127 * 180.27205 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3055 0.0000 0.0000 3 14 2.2395 1.6176 0.0000 4 1 3.0933 1.6963 -1.2125 5 1 1.2746 2.7464 -0.0006 6 1 3.0933 1.6964 1.2126 7 6 2.0084 -1.2176 0.0005 8 1 3.0884 -1.2176 0.0001 9 6 1.3128 -2.4222 0.0005 10 7 0.0046 -2.5786 0.0019 11 7 -0.3691 -3.9193 0.0009 12 6 0.7071 -4.7306 0.0008 13 8 0.7100 -5.9435 -0.0005 14 6 1.9132 -3.8127 0.0005 15 1 2.5148 -3.9700 -0.8947 16 6 2.7558 -4.0341 1.2582 17 6 3.3994 -5.3955 1.1984 18 6 4.7732 -5.5293 1.3254 19 6 5.3200 -6.8012 1.2646 20 7 4.5184 -7.8385 1.0830 21 6 3.2156 -7.6737 0.9718 22 7 2.6605 -6.4793 1.0247 23 1 -0.4850 0.8401 -0.0004 24 1 -1.2879 -4.2304 0.0001 25 1 2.1169 -3.9726 2.1392 26 1 3.5297 -3.2687 1.3165 27 1 5.4023 -4.6631 1.4680 28 1 6.3864 -6.9435 1.3592 29 1 2.5866 -8.5398 0.8286 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259923369.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:39 Heat of formation + Delta-G solvation = 66.038609 kcal Electronic energy + Delta-G solvation = -17197.614598 eV Core-core repulsion = 14315.424941 eV Total energy + Delta-G solvation = -2882.189657 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.72404 -39.26108 -35.73572 -34.35013 -33.51390 -32.33608 -30.81803 -28.83020 -25.89560 -25.29065 -23.99598 -22.19523 -20.23968 -19.28799 -17.24580 -16.66088 -16.40488 -16.08250 -15.18832 -14.92526 -14.60462 -14.45822 -13.63817 -13.49188 -13.14244 -13.04925 -12.40109 -11.79932 -11.66330 -11.35237 -11.18797 -10.84309 -10.52556 -10.44330 -10.35668 -10.07801 -9.32169 -9.29224 -9.05998 -8.72232 -7.83378 -7.44460 -6.68138 -4.67091 1.20419 1.40801 2.92120 3.05170 3.05852 3.36936 3.87646 4.13162 4.15335 4.42162 4.47086 4.56706 4.70741 5.16914 5.24093 5.29625 5.38955 5.68975 5.81595 5.85457 5.94690 6.21943 6.28984 6.51185 6.72632 6.97756 7.30938 7.34760 7.98596 8.17250 8.49588 8.54257 8.78683 9.44325 9.98058 10.22637 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.031055 B = 0.006814 C = 0.005674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.414387 B = 4108.207056 C = 4933.833279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.735 5.735 2 C 0.071 3.929 3 Si 0.914 3.086 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.421 4.421 8 H 0.089 0.911 9 C 0.198 3.802 10 N -0.351 5.351 11 N -0.582 5.582 12 C 0.474 3.526 13 O -0.522 6.522 14 C -0.124 4.124 15 H 0.097 0.903 16 C -0.038 4.038 17 C 0.171 3.829 18 C -0.228 4.228 19 C 0.134 3.866 20 N -0.536 5.536 21 C 0.288 3.712 22 N -0.456 5.456 23 H 0.280 0.720 24 H 0.407 0.593 25 H 0.086 0.914 26 H 0.097 0.903 27 H 0.144 0.856 28 H 0.161 0.839 29 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.137 -3.312 2.445 9.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.360 5.360 2 C -0.155 4.155 3 Si 0.738 3.262 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.461 4.461 8 H 0.107 0.893 9 C 0.034 3.966 10 N -0.176 5.176 11 N -0.322 5.322 12 C 0.258 3.742 13 O -0.397 6.397 14 C -0.148 4.148 15 H 0.115 0.885 16 C -0.076 4.076 17 C 0.024 3.976 18 C -0.250 4.250 19 C -0.032 4.032 20 N -0.251 5.251 21 C 0.000 4.000 22 N -0.169 5.169 23 H 0.091 0.909 24 H 0.247 0.753 25 H 0.104 0.896 26 H 0.116 0.884 27 H 0.162 0.838 28 H 0.178 0.822 29 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 6.477 -4.311 2.300 8.113 hybrid contribution 1.197 0.899 -0.003 1.497 sum 7.674 -3.412 2.297 8.707 Atomic orbital electron populations 1.69806 1.07365 1.28922 1.29918 1.26005 0.94842 1.00983 0.93620 0.86281 0.79922 0.80160 0.79870 1.18935 1.20327 1.18865 1.18365 0.94134 0.87899 1.45752 0.89325 1.21334 0.90279 0.90416 0.94537 1.77488 1.13050 0.89282 1.37756 1.47831 1.07586 1.06267 1.70505 1.21276 0.87105 0.87857 0.78007 1.90690 1.86001 1.11472 1.51572 1.21336 0.96926 0.97969 0.98606 0.88543 1.20263 0.99190 0.89940 0.98254 1.22081 0.90421 0.95915 0.89163 1.22795 0.97043 1.00102 1.05080 1.23064 1.00134 0.88196 0.91819 1.68365 1.06717 1.35386 1.14594 1.25032 0.88455 0.95270 0.91272 1.68940 1.39710 0.98476 1.09788 0.90895 0.75277 0.89568 0.88426 0.83791 0.82155 0.79438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -18.49 11.95 55.58 0.66 -17.82 15 2 C 0.07 1.65 5.51 -17.21 -0.09 1.56 15 3 Si 0.91 17.04 29.57 -169.99 -5.03 12.02 15 4 H -0.26 -4.87 7.11 56.52 0.40 -4.47 15 5 H -0.28 -5.18 7.11 56.52 0.40 -4.78 15 6 H -0.26 -4.80 7.11 56.52 0.40 -4.40 15 7 C -0.42 -9.92 9.26 -38.38 -0.36 -10.28 15 8 H 0.09 1.85 7.85 -52.49 -0.41 1.44 15 9 C 0.20 4.84 6.38 -81.93 -0.52 4.32 15 10 N -0.35 -9.18 10.63 33.85 0.36 -8.82 15 11 N -0.58 -13.83 7.10 31.45 0.22 -13.61 15 12 C 0.47 11.12 7.96 -10.56 -0.08 11.04 15 13 O -0.52 -12.73 14.61 5.54 0.08 -12.64 15 14 C -0.12 -2.68 2.98 -92.13 -0.27 -2.95 15 15 H 0.10 2.05 8.14 -51.93 -0.42 1.63 15 16 C -0.04 -0.68 5.16 -27.88 -0.14 -0.83 15 17 C 0.17 2.97 6.21 -82.24 -0.51 2.46 15 18 C -0.23 -3.14 9.80 -39.31 -0.39 -3.53 15 19 C 0.13 1.76 11.30 -17.21 -0.19 1.56 15 20 N -0.54 -8.28 10.44 -14.58 -0.15 -8.43 15 21 C 0.29 4.82 12.29 -92.15 -1.13 3.69 15 22 N -0.46 -8.78 6.54 -10.79 -0.07 -8.85 15 23 H 0.28 6.43 8.29 -40.82 -0.34 6.09 15 24 H 0.41 8.74 8.96 -183.29 -1.64 7.10 15 25 H 0.09 1.66 8.14 -51.93 -0.42 1.24 15 26 H 0.10 1.53 7.88 -51.93 -0.41 1.12 15 27 H 0.14 1.52 8.01 -52.49 -0.42 1.10 15 28 H 0.16 1.47 8.06 -52.49 -0.42 1.05 15 29 H 0.19 2.72 8.06 -52.49 -0.42 2.29 15 LS Contribution 262.39 15.07 3.95 3.95 Total: -1.00 -30.36 262.39 -7.37 -37.73 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -3.71 Total: 9.41 kcal Atomic # 6 Polarization: 10.75 SS G_CDS: -3.70 Total: 7.05 kcal Atomic # 7 Polarization: -58.55 SS G_CDS: 1.02 Total: -57.52 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: 0.08 Total: -12.64 kcal Atomic # 14 Polarization: 17.04 SS G_CDS: -5.03 Total: 12.02 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -30.36 -7.37 -37.73 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259923369.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.771 kcal (2) G-P(sol) polarization free energy of solvation -30.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds