Wall clock time and date at job start Mon Mar 30 2020 04:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30553 * 1 3 3 Si 1.86792 * 120.00141 * 2 1 4 4 H 1.48501 * 109.47119 * 239.99734 * 3 2 1 5 5 H 1.48503 * 109.47201 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.47318 * 119.99782 * 3 2 1 7 7 C 1.40589 * 119.99785 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99884 * 179.97438 * 7 2 1 9 9 C 1.39101 * 119.99670 * 0.02562 * 7 2 1 10 10 N 1.31757 * 126.82656 * 359.89943 * 9 7 2 11 11 N 1.39172 * 112.39589 * 179.97438 * 10 9 7 12 12 C 1.34776 * 111.43579 * 0.09252 * 11 10 9 13 13 O 1.21295 * 127.14836 * 180.02562 * 12 11 10 14 14 C 1.51458 * 126.64181 * 179.97438 * 9 7 2 15 15 H 1.09002 * 110.56656 * 298.69363 * 14 9 7 16 16 C 1.52995 * 110.55993 * 61.39403 * 14 9 7 17 17 C 1.50704 * 109.47207 * 182.96622 * 16 14 9 18 18 C 1.38621 * 120.45077 * 125.00099 * 17 16 14 19 19 C 1.38578 * 118.39885 * 179.97438 * 18 17 16 20 20 N 1.32344 * 119.10484 * 0.27991 * 19 18 17 21 21 C 1.31783 * 120.82016 * 359.43130 * 20 19 18 22 22 N 1.31811 * 121.75410 * 0.58090 * 21 20 19 23 23 H 0.97003 * 119.99724 * 0.02562 * 1 2 3 24 24 H 0.97001 * 124.28536 * 180.10934 * 11 10 9 25 25 H 1.09002 * 109.47179 * 62.96773 * 16 14 9 26 26 H 1.09005 * 109.47560 * 302.96567 * 16 14 9 27 27 H 1.08001 * 120.79567 * 359.95603 * 18 17 16 28 28 H 1.08002 * 120.44322 * 179.97438 * 19 18 17 29 29 H 1.08000 * 119.12127 * 180.27205 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3055 0.0000 0.0000 3 14 2.2395 1.6176 0.0000 4 1 3.0933 1.6963 -1.2125 5 1 1.2746 2.7464 -0.0006 6 1 3.0933 1.6964 1.2126 7 6 2.0084 -1.2176 0.0005 8 1 3.0884 -1.2176 0.0001 9 6 1.3128 -2.4222 0.0005 10 7 0.0046 -2.5786 0.0019 11 7 -0.3691 -3.9193 0.0009 12 6 0.7071 -4.7306 0.0008 13 8 0.7100 -5.9435 -0.0005 14 6 1.9132 -3.8127 0.0005 15 1 2.5148 -3.9700 -0.8947 16 6 2.7558 -4.0341 1.2582 17 6 3.3994 -5.3955 1.1984 18 6 4.7732 -5.5293 1.3254 19 6 5.3200 -6.8012 1.2646 20 7 4.5184 -7.8385 1.0830 21 6 3.2156 -7.6737 0.9718 22 7 2.6605 -6.4793 1.0247 23 1 -0.4850 0.8401 -0.0004 24 1 -1.2879 -4.2304 0.0001 25 1 2.1169 -3.9726 2.1392 26 1 3.5297 -3.2687 1.3165 27 1 5.4023 -4.6631 1.4680 28 1 6.3864 -6.9435 1.3592 29 1 2.5866 -8.5398 0.8286 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259923369.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:39 Heat of formation + Delta-G solvation = 45.660683 kcal Electronic energy + Delta-G solvation = -17198.498251 eV Core-core repulsion = 14315.424941 eV Total energy + Delta-G solvation = -2883.073311 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.98593 -40.98290 -37.58687 -35.70298 -35.30868 -33.59536 -32.35333 -30.48912 -27.75086 -26.80076 -25.17640 -23.53383 -22.05806 -21.03189 -18.55941 -18.27352 -18.03675 -17.61041 -16.57561 -16.29706 -16.14450 -15.87804 -15.30398 -15.11139 -14.62483 -14.31489 -13.89325 -13.31062 -13.27695 -12.88021 -12.77819 -12.61391 -12.19758 -11.90710 -11.62199 -11.43002 -11.02632 -10.80617 -10.46686 -10.10451 -9.58889 -9.28732 -8.43941 -6.55538 0.02196 0.27684 1.33546 1.54413 1.66257 1.71492 2.31136 2.35630 2.77834 2.93396 3.19957 3.33295 3.38640 3.52564 3.82376 3.92487 4.27790 4.28608 4.30310 4.45051 4.68347 4.77593 4.96107 4.98417 5.22449 5.50554 5.57190 6.18747 6.20855 6.38069 6.75155 6.94736 7.30525 7.62164 8.14180 8.48481 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.031055 B = 0.006814 C = 0.005674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.414387 B = 4108.207056 C = 4933.833279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.026 3.974 3 Si 0.994 3.006 4 H -0.256 1.256 5 H -0.281 1.281 6 H -0.250 1.250 7 C -0.435 4.435 8 H 0.116 0.884 9 C 0.181 3.819 10 N -0.395 5.395 11 N -0.585 5.585 12 C 0.466 3.534 13 O -0.536 6.536 14 C -0.115 4.115 15 H 0.099 0.901 16 C -0.028 4.028 17 C 0.144 3.856 18 C -0.211 4.211 19 C 0.138 3.862 20 N -0.541 5.541 21 C 0.273 3.727 22 N -0.500 5.500 23 H 0.284 0.716 24 H 0.411 0.589 25 H 0.066 0.934 26 H 0.127 0.873 27 H 0.183 0.817 28 H 0.208 0.792 29 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.285 -2.248 2.771 11.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.196 4.196 3 Si 0.814 3.186 4 H -0.180 1.180 5 H -0.206 1.206 6 H -0.174 1.174 7 C -0.475 4.475 8 H 0.133 0.867 9 C 0.020 3.980 10 N -0.221 5.221 11 N -0.325 5.325 12 C 0.250 3.750 13 O -0.413 6.413 14 C -0.139 4.139 15 H 0.117 0.883 16 C -0.066 4.066 17 C -0.002 4.002 18 C -0.232 4.232 19 C -0.028 4.028 20 N -0.256 5.256 21 C -0.015 4.015 22 N -0.214 5.214 23 H 0.095 0.905 24 H 0.251 0.749 25 H 0.084 0.916 26 H 0.145 0.855 27 H 0.200 0.800 28 H 0.224 0.776 29 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 9.632 -3.261 2.630 10.503 hybrid contribution 0.230 0.544 -0.107 0.600 sum 9.861 -2.718 2.523 10.536 Atomic orbital electron populations 1.69939 1.09483 1.30257 1.30695 1.27074 0.95467 1.04823 0.92210 0.85063 0.78325 0.74716 0.80500 1.18005 1.20642 1.17412 1.18967 0.95568 0.87915 1.45016 0.86655 1.21794 0.90297 0.92065 0.93891 1.77440 1.14538 0.90147 1.40003 1.47856 1.08103 1.06011 1.70509 1.21632 0.87793 0.87928 0.77669 1.90676 1.86364 1.11966 1.52257 1.21272 0.96465 0.95756 1.00444 0.88330 1.20200 0.99100 0.91869 0.95479 1.22055 0.92105 0.94867 0.91159 1.23133 0.95521 1.01863 1.02706 1.23866 1.01885 0.87322 0.89739 1.68435 1.06213 1.36440 1.14533 1.25191 0.89381 0.94944 0.91963 1.68800 1.41549 0.99700 1.11353 0.90508 0.74852 0.91564 0.85529 0.79954 0.77564 0.78721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -39.41 11.95 21.94 0.26 -39.15 15 2 C 0.03 1.20 5.51 85.46 0.47 1.67 15 3 Si 0.99 33.40 29.57 68.60 2.03 35.43 15 4 H -0.26 -8.21 7.11 99.48 0.71 -7.50 15 5 H -0.28 -9.50 7.11 99.48 0.71 -8.79 15 6 H -0.25 -7.84 7.11 99.48 0.71 -7.13 15 7 C -0.44 -19.97 9.26 23.05 0.21 -19.76 15 8 H 0.12 4.50 7.85 -2.91 -0.02 4.48 15 9 C 0.18 8.91 6.38 43.02 0.27 9.18 15 10 N -0.39 -21.20 10.63 -46.81 -0.50 -21.70 15 11 N -0.58 -28.80 7.10 -172.80 -1.23 -30.02 15 12 C 0.47 22.42 7.96 87.93 0.70 23.12 15 13 O -0.54 -26.87 14.61 -3.08 -0.04 -26.92 15 14 C -0.11 -4.98 2.98 -11.77 -0.04 -5.01 15 15 H 0.10 4.17 8.14 -2.39 -0.02 4.15 15 16 C -0.03 -0.99 5.16 29.85 0.15 -0.83 15 17 C 0.14 4.81 6.21 42.58 0.26 5.07 15 18 C -0.21 -5.05 9.80 22.44 0.22 -4.83 15 19 C 0.14 3.09 11.30 84.70 0.96 4.05 15 20 N -0.54 -15.63 10.44 -200.05 -2.09 -17.71 15 21 C 0.27 9.06 12.29 180.88 2.22 11.28 15 22 N -0.50 -19.24 6.54 -188.06 -1.23 -20.47 15 23 H 0.28 13.16 8.29 -92.71 -0.77 12.39 15 24 H 0.41 18.51 8.96 -213.91 -1.92 16.59 15 25 H 0.07 2.57 8.14 -2.39 -0.02 2.55 15 26 H 0.13 3.63 7.88 -2.38 -0.02 3.61 15 27 H 0.18 2.87 8.01 -2.91 -0.02 2.84 15 28 H 0.21 2.64 8.06 -2.91 -0.02 2.62 15 29 H 0.20 5.76 8.06 -2.91 -0.02 5.74 15 Total: -1.00 -66.97 262.39 1.93 -65.04 By element: Atomic # 1 Polarization: 32.27 SS G_CDS: -0.72 Total: 31.55 kcal Atomic # 6 Polarization: 18.51 SS G_CDS: 5.44 Total: 23.95 kcal Atomic # 7 Polarization: -124.27 SS G_CDS: -4.78 Total: -129.05 kcal Atomic # 8 Polarization: -26.87 SS G_CDS: -0.04 Total: -26.92 kcal Atomic # 14 Polarization: 33.40 SS G_CDS: 2.03 Total: 35.43 kcal Total: -66.97 1.93 -65.04 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259923369.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.700 kcal (2) G-P(sol) polarization free energy of solvation -66.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds