Wall clock time and date at job start Mon Mar 30 2020 04:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30552 * 1 3 3 Si 1.86802 * 119.99706 * 2 1 4 4 H 1.48501 * 109.47122 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47292 * 299.99888 * 3 2 1 6 6 H 1.48496 * 109.47411 * 60.00033 * 3 2 1 7 7 C 1.40582 * 120.00406 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00563 * 180.02562 * 7 2 1 9 9 C 1.39109 * 119.99863 * 0.02562 * 7 2 1 10 10 N 1.31436 * 126.64261 * 0.02562 * 9 7 2 11 11 N 1.39180 * 112.34339 * 179.97438 * 10 9 7 12 12 C 1.35112 * 111.47781 * 0.08457 * 11 10 9 13 13 O 1.21293 * 127.31257 * 179.97438 * 12 11 10 14 14 C 1.51451 * 126.64941 * 179.97438 * 9 7 2 15 15 H 1.08999 * 110.56098 * 61.29277 * 14 9 7 16 16 C 1.52995 * 110.56012 * 298.59870 * 14 9 7 17 17 C 1.50701 * 109.47191 * 177.02999 * 16 14 9 18 18 C 1.38619 * 120.44808 * 124.97741 * 17 16 14 19 19 C 1.38575 * 118.40271 * 180.02562 * 18 17 16 20 20 N 1.32354 * 119.10005 * 0.02562 * 19 18 17 21 21 C 1.31780 * 120.82275 * 0.02562 * 20 19 18 22 22 N 1.31806 * 121.75172 * 359.97384 * 21 20 19 23 23 H 0.97000 * 120.00256 * 0.02562 * 1 2 3 24 24 H 0.97004 * 124.28136 * 180.02562 * 11 10 9 25 25 H 1.09004 * 109.47159 * 57.03044 * 16 14 9 26 26 H 1.08994 * 109.47061 * 297.03246 * 16 14 9 27 27 H 1.08005 * 120.79994 * 0.04358 * 18 17 16 28 28 H 1.07997 * 120.45366 * 180.29285 * 19 18 17 29 29 H 1.07995 * 119.12029 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3055 0.0000 0.0000 3 14 2.2394 1.6178 0.0000 4 1 3.6995 1.3465 0.0006 5 1 1.8807 2.3965 -1.2125 6 1 1.8807 2.3965 1.2124 7 6 2.0085 -1.2174 0.0005 8 1 3.0885 -1.2175 0.0010 9 6 1.3130 -2.4222 0.0005 10 7 0.0075 -2.5743 -0.0004 11 7 -0.3691 -3.9142 -0.0007 12 6 0.7075 -4.7306 0.0020 13 8 0.7104 -5.9435 0.0029 14 6 1.9134 -3.8126 0.0005 15 1 2.5152 -3.9697 0.8957 16 6 2.7559 -4.0341 -1.2572 17 6 3.3995 -5.3954 -1.1974 18 6 3.2190 -6.3037 -2.2289 19 6 3.8299 -7.5436 -2.1299 20 7 4.5601 -7.8178 -1.0606 21 6 4.7089 -6.9296 -0.0986 22 7 4.1429 -5.7407 -0.1587 23 1 -0.4850 0.8400 -0.0004 24 1 -1.2885 -4.2233 -0.0017 25 1 3.5297 -3.2686 -1.3156 26 1 2.1169 -3.9727 -2.1380 27 1 2.6169 -6.0510 -3.0892 28 1 3.7153 -8.2747 -2.9165 29 1 5.3111 -7.1822 0.7615 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259923377.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:40 Heat of formation + Delta-G solvation = 48.714910 kcal Electronic energy + Delta-G solvation = -17139.502905 eV Core-core repulsion = 14256.562036 eV Total energy + Delta-G solvation = -2882.940869 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.76362 -39.41113 -35.99631 -34.40132 -33.59740 -32.41404 -30.87813 -28.92174 -25.97632 -25.38132 -24.08164 -22.27046 -20.32207 -19.41767 -17.29242 -16.75261 -16.40806 -16.27596 -15.22269 -15.04340 -14.88809 -14.34925 -13.70090 -13.66537 -13.23618 -13.07212 -12.46381 -12.08034 -11.62176 -11.31382 -11.19956 -10.88111 -10.65962 -10.54019 -10.36262 -10.25146 -9.50178 -9.38391 -9.05618 -8.97164 -8.04573 -7.59260 -6.73207 -4.73664 1.21425 1.35158 2.85709 3.05076 3.08869 3.20855 3.85999 4.02371 4.07271 4.33321 4.40060 4.41618 4.73317 5.12072 5.20894 5.28154 5.37702 5.62412 5.66405 5.83116 6.03536 6.07952 6.31651 6.53403 6.69202 6.94258 7.20442 7.28110 7.82974 8.09772 8.36587 8.48682 8.71350 9.21147 9.87897 10.17468 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.031247 B = 0.006620 C = 0.005810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.884242 B = 4228.657133 C = 4818.404168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.733 5.733 2 C 0.070 3.930 3 Si 0.914 3.086 4 H -0.258 1.258 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.416 4.416 8 H 0.092 0.908 9 C 0.200 3.800 10 N -0.353 5.353 11 N -0.572 5.572 12 C 0.473 3.527 13 O -0.567 6.567 14 C -0.122 4.122 15 H 0.115 0.885 16 C -0.038 4.038 17 C 0.200 3.800 18 C -0.218 4.218 19 C 0.144 3.856 20 N -0.534 5.534 21 C 0.293 3.707 22 N -0.512 5.512 23 H 0.280 0.720 24 H 0.409 0.591 25 H 0.104 0.896 26 H 0.081 0.919 27 H 0.141 0.859 28 H 0.162 0.838 29 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.224 -3.809 -3.873 8.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.358 5.358 2 C -0.155 4.155 3 Si 0.738 3.262 4 H -0.182 1.182 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.456 4.456 8 H 0.110 0.890 9 C 0.038 3.962 10 N -0.179 5.179 11 N -0.309 5.309 12 C 0.257 3.743 13 O -0.448 6.448 14 C -0.146 4.146 15 H 0.132 0.868 16 C -0.077 4.077 17 C 0.054 3.946 18 C -0.240 4.240 19 C -0.021 4.021 20 N -0.249 5.249 21 C 0.004 3.996 22 N -0.226 5.226 23 H 0.091 0.909 24 H 0.249 0.751 25 H 0.122 0.878 26 H 0.100 0.900 27 H 0.159 0.841 28 H 0.180 0.820 29 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 5.713 -4.198 -3.084 7.731 hybrid contribution -0.051 0.267 -0.625 0.681 sum 5.661 -3.932 -3.709 7.827 Atomic orbital electron populations 1.69818 1.07416 1.28856 1.29693 1.26035 0.94856 1.01136 0.93514 0.86146 0.80754 0.80673 0.78593 1.18195 1.19848 1.19842 1.18505 0.94402 0.87776 1.44927 0.88975 1.21310 0.90212 0.90593 0.94077 1.77498 1.13131 0.88460 1.38832 1.47994 1.07582 1.06464 1.68842 1.21582 0.87778 0.87554 0.77364 1.90618 1.87078 1.12388 1.54700 1.21403 0.96129 0.97328 0.99770 0.86765 1.20270 0.98438 0.91083 0.97907 1.21737 0.88870 0.96200 0.87833 1.22702 1.03151 0.96235 1.01907 1.23054 0.89853 0.94552 0.94632 1.68330 1.18253 1.35482 1.02818 1.24840 0.93822 0.84884 0.96016 1.68167 1.09468 1.19879 1.25069 0.90921 0.75132 0.87750 0.89994 0.84071 0.82044 0.79225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -18.23 11.94 55.58 0.66 -17.56 15 2 C 0.07 1.63 5.51 -17.21 -0.09 1.53 15 3 Si 0.91 17.05 29.57 -169.99 -5.03 12.02 15 4 H -0.26 -4.67 7.11 56.52 0.40 -4.27 15 5 H -0.27 -5.06 7.11 56.52 0.40 -4.66 15 6 H -0.27 -5.11 7.11 56.52 0.40 -4.71 15 7 C -0.42 -9.82 9.26 -38.37 -0.36 -10.18 15 8 H 0.09 1.98 7.85 -52.49 -0.41 1.57 15 9 C 0.20 4.88 6.37 -82.07 -0.52 4.36 15 10 N -0.35 -9.12 10.60 33.80 0.36 -8.76 15 11 N -0.57 -13.38 7.11 31.51 0.22 -13.16 15 12 C 0.47 11.07 8.05 -10.41 -0.08 10.99 15 13 O -0.57 -14.17 17.34 5.55 0.10 -14.08 15 14 C -0.12 -2.65 2.90 -92.14 -0.27 -2.92 15 15 H 0.11 2.53 7.87 -51.93 -0.41 2.12 15 16 C -0.04 -0.70 5.13 -27.88 -0.14 -0.84 15 17 C 0.20 3.53 5.29 -82.24 -0.43 3.10 15 18 C -0.22 -3.36 9.80 -39.32 -0.39 -3.74 15 19 C 0.14 2.05 11.31 -17.20 -0.19 1.85 15 20 N -0.53 -8.33 10.44 -14.58 -0.15 -8.48 15 21 C 0.29 4.60 12.29 -92.16 -1.13 3.47 15 22 N -0.51 -9.15 9.96 -10.80 -0.11 -9.26 15 23 H 0.28 6.30 8.29 -40.82 -0.34 5.96 15 24 H 0.41 8.58 8.96 -183.28 -1.64 6.94 15 25 H 0.10 1.77 8.08 -51.93 -0.42 1.35 15 26 H 0.08 1.46 7.94 -51.93 -0.41 1.05 15 27 H 0.14 1.84 8.01 -52.48 -0.42 1.42 15 28 H 0.16 1.67 8.06 -52.49 -0.42 1.25 15 29 H 0.19 2.30 8.06 -52.49 -0.42 1.87 15 LS Contribution 267.30 15.07 4.03 4.03 Total: -1.00 -30.52 267.30 -7.23 -37.74 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -3.70 Total: 9.89 kcal Atomic # 6 Polarization: 11.23 SS G_CDS: -3.61 Total: 7.62 kcal Atomic # 7 Polarization: -58.21 SS G_CDS: 0.99 Total: -57.22 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: 0.10 Total: -14.08 kcal Atomic # 14 Polarization: 17.05 SS G_CDS: -5.03 Total: 12.02 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -30.52 -7.23 -37.74 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259923377.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.457 kcal (2) G-P(sol) polarization free energy of solvation -30.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds