Wall clock time and date at job start Mon Mar 30 2020 03:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38344 * 119.93909 * 2 1 4 4 C 1.38302 * 120.25331 * 180.02562 * 3 2 1 5 5 C 1.38028 * 120.12402 * 359.95800 * 4 3 2 6 6 C 1.39355 * 119.87253 * 0.02562 * 5 4 3 7 7 C 1.48339 * 120.12119 * 179.97438 * 6 5 4 8 8 N 1.30713 * 125.86260 * 145.02604 * 7 6 5 9 9 O 1.41667 * 107.81950 * 180.02562 * 8 7 6 10 10 N 1.41651 * 107.63751 * 0.02562 * 9 8 7 11 11 C 1.30381 * 107.93474 * 359.70511 * 10 9 8 12 12 O 1.35566 * 125.83202 * 180.25416 * 11 10 9 13 13 C 1.34842 * 116.99752 * 0.22257 * 12 11 10 14 14 H 1.08004 * 120.00256 * 0.02562 * 13 12 11 15 15 C 1.38685 * 119.99969 * 179.97438 * 13 12 11 16 16 N 1.31526 * 120.00179 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 120.00152 * 180.02562 * 15 13 12 18 18 H 1.48507 * 109.46868 * 0.02562 * 17 15 13 19 19 H 1.48495 * 109.46695 * 120.00178 * 17 15 13 20 20 H 1.48495 * 109.47181 * 240.00235 * 17 15 13 21 21 C 1.37994 * 119.93626 * 179.97438 * 2 1 3 22 22 H 1.09001 * 109.46910 * 270.02255 * 1 2 3 23 23 H 1.09002 * 109.47022 * 30.02132 * 1 2 3 24 24 H 1.09001 * 109.47298 * 150.02485 * 1 2 3 25 25 H 1.08005 * 119.87338 * 0.02562 * 3 2 1 26 26 H 1.08000 * 119.94258 * 179.97438 * 4 3 2 27 27 H 1.08005 * 120.06362 * 180.29931 * 5 4 3 28 28 H 0.96990 * 120.00527 * 179.97438 * 16 15 13 29 29 H 1.07991 * 120.06375 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1988 0.0000 4 6 3.5804 1.2064 -0.0005 5 6 4.2797 0.0164 -0.0002 6 6 3.5895 -1.1942 0.0001 7 6 4.3354 -2.4764 -0.0001 8 7 3.9704 -3.5748 0.6074 9 8 4.9588 -4.5581 0.3560 10 7 5.9572 -3.9656 -0.4555 11 6 5.6068 -2.7310 -0.6858 12 8 6.3010 -1.8345 -1.4290 13 6 7.4545 -2.2607 -1.9822 14 1 7.7864 -3.2763 -1.8242 15 6 8.2142 -1.3953 -2.7551 16 7 7.8098 -0.1587 -2.9480 17 14 9.8118 -1.9858 -3.5221 18 1 10.0406 -3.4070 -3.1569 19 1 9.7268 -1.8624 -4.9995 20 1 10.9377 -1.1578 -3.0202 21 6 2.1956 -1.1958 0.0005 22 1 -0.3633 0.0004 1.0277 23 1 -0.3633 0.8898 -0.5142 24 1 -0.3634 -0.8902 -0.5134 25 1 1.6543 2.1324 0.0004 26 1 4.1144 2.1452 -0.0010 27 1 5.3597 0.0234 0.0043 28 1 8.3412 0.4467 -3.4882 29 1 1.6557 -2.1311 0.0014 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259929375.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:34 Heat of formation + Delta-G solvation = 77.779857 kcal Electronic energy + Delta-G solvation = -16815.578781 eV Core-core repulsion = 13901.605511 eV Total energy + Delta-G solvation = -2913.973270 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.23596 -38.89646 -37.56293 -33.51018 -32.58203 -32.19951 -30.58526 -29.87495 -26.89702 -25.75926 -23.75596 -21.79296 -21.38975 -19.94748 -18.05666 -17.21938 -16.35763 -15.47344 -15.41040 -14.92552 -14.62521 -14.28490 -13.75076 -13.53222 -13.22492 -13.03343 -12.84644 -12.27713 -12.21022 -11.98737 -11.49947 -11.27778 -11.20139 -10.90779 -10.77948 -10.51416 -10.33823 -9.94324 -9.48050 -8.68923 -8.55419 -8.33513 -6.69861 -4.34728 0.92178 1.56515 1.85568 2.91638 3.03405 3.12504 3.16150 3.41752 3.70884 3.91733 4.13116 4.36964 4.83576 4.92386 4.97926 5.14167 5.35083 5.36972 5.57756 5.65461 5.70601 5.84807 6.06679 6.11130 6.22510 6.32227 6.64246 6.68764 6.74621 7.10525 7.11908 7.68510 8.03768 8.74002 9.23628 10.45784 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.024116 B = 0.006938 C = 0.005580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.774901 B = 4035.014376 C = 5016.563567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.100 4.100 3 C -0.106 4.106 4 C -0.116 4.116 5 C -0.068 4.068 6 C -0.031 4.031 7 C 0.136 3.864 8 N -0.290 5.290 9 O 0.000 6.000 10 N -0.376 5.376 11 C 0.241 3.759 12 O -0.139 6.139 13 C -0.390 4.390 14 H 0.103 0.897 15 C 0.047 3.953 16 N -0.852 5.852 17 Si 0.950 3.050 18 H -0.262 1.262 19 H -0.273 1.273 20 H -0.273 1.273 21 C -0.084 4.084 22 H 0.068 0.932 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.123 0.877 26 H 0.129 0.871 27 H 0.139 0.861 28 H 0.275 0.725 29 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.239 4.609 3.590 10.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.100 4.100 3 C -0.124 4.124 4 C -0.134 4.134 5 C -0.087 4.087 6 C -0.033 4.033 7 C -0.049 4.049 8 N -0.033 5.033 9 O -0.130 6.130 10 N -0.165 5.165 11 C 0.027 3.973 12 O -0.029 6.029 13 C -0.468 4.468 14 H 0.120 0.880 15 C -0.160 4.160 16 N -0.486 5.486 17 Si 0.774 3.226 18 H -0.186 1.186 19 H -0.198 1.198 20 H -0.198 1.198 21 C -0.104 4.104 22 H 0.087 0.913 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.141 0.859 26 H 0.147 0.853 27 H 0.157 0.843 28 H 0.085 0.915 29 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -9.270 3.785 3.895 10.744 hybrid contribution 0.946 0.414 -0.757 1.281 sum -8.324 4.199 3.138 9.837 Atomic orbital electron populations 1.20749 0.91007 1.02723 1.02186 1.19751 0.96072 0.92753 1.01380 1.21139 0.94318 0.97353 0.99638 1.21070 0.93969 0.98030 1.00334 1.21379 1.01301 0.90779 0.95274 1.17769 0.92339 0.88876 1.04302 1.23436 0.92220 0.94256 0.94940 1.79740 1.10858 0.97710 1.15016 1.93114 1.26513 1.29318 1.64052 1.80293 1.09768 1.07730 1.18721 1.24230 0.90705 0.88849 0.93527 1.84128 1.33745 1.30829 1.54159 1.21571 0.95241 0.99734 1.30255 0.87955 1.25394 0.99605 0.94955 0.96056 1.70018 1.38194 1.04545 1.35855 0.85492 0.79066 0.79377 0.78692 1.18616 1.19824 1.19803 1.21036 0.92313 0.98175 0.98856 0.91297 0.91561 0.91573 0.85935 0.85278 0.84275 0.91500 0.85605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 10.01 36.01 0.36 -0.70 15 2 C -0.10 -1.31 5.87 -104.67 -0.61 -1.93 15 3 C -0.11 -1.35 9.69 -39.52 -0.38 -1.74 15 4 C -0.12 -1.69 10.03 -39.63 -0.40 -2.09 15 5 C -0.07 -1.21 9.36 -39.24 -0.37 -1.58 15 6 C -0.03 -0.58 5.86 -104.90 -0.61 -1.20 15 7 C 0.14 2.95 6.90 -80.78 -0.56 2.40 15 8 N -0.29 -6.27 12.94 34.51 0.45 -5.83 15 9 O 0.00 -0.01 13.63 12.23 0.17 0.16 15 10 N -0.38 -9.55 11.85 31.80 0.38 -9.18 15 11 C 0.24 6.02 7.85 -14.76 -0.12 5.91 15 12 O -0.14 -3.78 8.82 0.58 0.01 -3.77 15 13 C -0.39 -10.77 9.73 30.90 0.30 -10.47 15 14 H 0.10 2.81 7.03 -52.48 -0.37 2.44 15 15 C 0.05 1.23 5.49 -17.52 -0.10 1.13 15 16 N -0.85 -23.17 13.67 55.48 0.76 -22.41 15 17 Si 0.95 20.03 29.55 -169.99 -5.02 15.01 15 18 H -0.26 -5.48 7.11 56.52 0.40 -5.07 15 19 H -0.27 -5.59 7.11 56.52 0.40 -5.19 15 20 H -0.27 -5.56 7.11 56.52 0.40 -5.16 15 21 C -0.08 -1.33 9.40 -39.24 -0.37 -1.69 15 22 H 0.07 0.59 8.14 -51.93 -0.42 0.16 15 23 H 0.07 0.54 8.08 -51.93 -0.42 0.12 15 24 H 0.07 0.61 8.08 -51.93 -0.42 0.19 15 25 H 0.12 1.19 8.06 -52.48 -0.42 0.77 15 26 H 0.13 1.60 8.06 -52.49 -0.42 1.17 15 27 H 0.14 2.74 7.31 -52.48 -0.38 2.36 15 28 H 0.28 6.82 8.31 -40.82 -0.34 6.49 15 29 H 0.13 1.86 8.06 -52.49 -0.42 1.43 15 LS Contribution 273.10 15.07 4.12 4.12 Total: -1.00 -29.71 273.10 -4.43 -34.14 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: -2.42 Total: -0.28 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: -2.85 Total: -11.95 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: 1.58 Total: -37.42 kcal Atomic # 8 Polarization: -3.79 SS G_CDS: 0.17 Total: -3.62 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -29.71 -4.43 -34.14 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259929375.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.921 kcal (2) G-P(sol) polarization free energy of solvation -29.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds