Wall clock time and date at job start Mon Mar 30 2020 03:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38344 * 119.93909 * 2 1 4 4 C 1.38302 * 120.25331 * 180.02562 * 3 2 1 5 5 C 1.38028 * 120.12402 * 359.95800 * 4 3 2 6 6 C 1.39355 * 119.87253 * 0.02562 * 5 4 3 7 7 C 1.48339 * 120.12119 * 179.97438 * 6 5 4 8 8 N 1.30713 * 125.86260 * 145.02604 * 7 6 5 9 9 O 1.41667 * 107.81950 * 180.02562 * 8 7 6 10 10 N 1.41651 * 107.63751 * 0.02562 * 9 8 7 11 11 C 1.30381 * 107.93474 * 359.70511 * 10 9 8 12 12 O 1.35566 * 125.83202 * 180.25416 * 11 10 9 13 13 C 1.34842 * 116.99752 * 0.22257 * 12 11 10 14 14 H 1.08004 * 120.00256 * 0.02562 * 13 12 11 15 15 C 1.38685 * 119.99969 * 179.97438 * 13 12 11 16 16 N 1.31526 * 120.00179 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 120.00152 * 180.02562 * 15 13 12 18 18 H 1.48507 * 109.46868 * 0.02562 * 17 15 13 19 19 H 1.48495 * 109.46695 * 120.00178 * 17 15 13 20 20 H 1.48495 * 109.47181 * 240.00235 * 17 15 13 21 21 C 1.37994 * 119.93626 * 179.97438 * 2 1 3 22 22 H 1.09001 * 109.46910 * 270.02255 * 1 2 3 23 23 H 1.09002 * 109.47022 * 30.02132 * 1 2 3 24 24 H 1.09001 * 109.47298 * 150.02485 * 1 2 3 25 25 H 1.08005 * 119.87338 * 0.02562 * 3 2 1 26 26 H 1.08000 * 119.94258 * 179.97438 * 4 3 2 27 27 H 1.08005 * 120.06362 * 180.29931 * 5 4 3 28 28 H 0.96990 * 120.00527 * 179.97438 * 16 15 13 29 29 H 1.07991 * 120.06375 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1988 0.0000 4 6 3.5804 1.2064 -0.0005 5 6 4.2797 0.0164 -0.0002 6 6 3.5895 -1.1942 0.0001 7 6 4.3354 -2.4764 -0.0001 8 7 3.9704 -3.5748 0.6074 9 8 4.9588 -4.5581 0.3560 10 7 5.9572 -3.9656 -0.4555 11 6 5.6068 -2.7310 -0.6858 12 8 6.3010 -1.8345 -1.4290 13 6 7.4545 -2.2607 -1.9822 14 1 7.7864 -3.2763 -1.8242 15 6 8.2142 -1.3953 -2.7551 16 7 7.8098 -0.1587 -2.9480 17 14 9.8118 -1.9858 -3.5221 18 1 10.0406 -3.4070 -3.1569 19 1 9.7268 -1.8624 -4.9995 20 1 10.9377 -1.1578 -3.0202 21 6 2.1956 -1.1958 0.0005 22 1 -0.3633 0.0004 1.0277 23 1 -0.3633 0.8898 -0.5142 24 1 -0.3634 -0.8902 -0.5134 25 1 1.6543 2.1324 0.0004 26 1 4.1144 2.1452 -0.0010 27 1 5.3597 0.0234 0.0043 28 1 8.3412 0.4467 -3.4882 29 1 1.6557 -2.1311 0.0014 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259929375.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:34 Heat of formation + Delta-G solvation = 58.045274 kcal Electronic energy + Delta-G solvation = -16816.434537 eV Core-core repulsion = 13901.605511 eV Total energy + Delta-G solvation = -2914.829026 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.05308 -40.16359 -39.55178 -35.03147 -34.55103 -33.42523 -32.53984 -31.29010 -28.06019 -27.62645 -25.24587 -23.52751 -22.72112 -21.53040 -20.03415 -19.07169 -17.76961 -17.22995 -17.05861 -16.37130 -16.21282 -15.87294 -15.22397 -15.15910 -14.70255 -14.53279 -14.07839 -13.93492 -13.40763 -13.17506 -12.97648 -12.92584 -12.87208 -12.31197 -12.18178 -12.12518 -11.95635 -11.84204 -11.40860 -10.55656 -9.86165 -9.60910 -8.69996 -6.46621 -0.65432 0.29323 0.38305 1.16662 1.27272 1.45035 1.46797 1.63023 2.00096 2.31643 2.41711 2.78790 2.82665 3.51873 3.87263 3.94673 4.10660 4.18695 4.34041 4.42641 4.56279 4.72122 4.90425 4.92766 4.98365 5.01951 5.30839 5.40857 5.49333 5.56551 5.68653 5.96793 6.11766 6.70044 7.19674 8.48762 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.024116 B = 0.006938 C = 0.005580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.774901 B = 4035.014376 C = 5016.563567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.092 4.092 3 C -0.089 4.089 4 C -0.116 4.116 5 C -0.091 4.091 6 C -0.063 4.063 7 C 0.150 3.850 8 N -0.285 5.285 9 O -0.010 6.010 10 N -0.395 5.395 11 C 0.231 3.769 12 O -0.157 6.157 13 C -0.427 4.427 14 H 0.094 0.906 15 C 0.006 3.994 16 N -0.885 5.885 17 Si 1.022 2.978 18 H -0.263 1.263 19 H -0.258 1.258 20 H -0.257 1.257 21 C -0.089 4.089 22 H 0.086 0.914 23 H 0.089 0.911 24 H 0.069 0.931 25 H 0.167 0.833 26 H 0.151 0.849 27 H 0.107 0.893 28 H 0.285 0.715 29 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.715 6.221 3.302 12.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.092 4.092 3 C -0.107 4.107 4 C -0.134 4.134 5 C -0.111 4.111 6 C -0.065 4.065 7 C -0.035 4.035 8 N -0.031 5.031 9 O -0.138 6.138 10 N -0.182 5.182 11 C 0.016 3.984 12 O -0.048 6.048 13 C -0.505 4.505 14 H 0.112 0.888 15 C -0.197 4.197 16 N -0.520 5.520 17 Si 0.840 3.160 18 H -0.187 1.187 19 H -0.183 1.183 20 H -0.181 1.181 21 C -0.108 4.108 22 H 0.104 0.896 23 H 0.107 0.893 24 H 0.088 0.912 25 H 0.184 0.816 26 H 0.168 0.832 27 H 0.125 0.875 28 H 0.095 0.905 29 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -10.746 5.375 3.616 12.548 hybrid contribution 1.238 0.009 -0.600 1.376 sum -9.508 5.384 3.016 11.335 Atomic orbital electron populations 1.20851 0.87848 1.04132 1.03690 1.20234 0.98218 0.91748 0.98980 1.21638 0.93451 0.99029 0.96607 1.21354 0.95192 0.97402 0.99416 1.21267 1.00041 0.92205 0.97633 1.17874 0.93589 0.87386 1.07649 1.23853 0.90925 0.95481 0.93248 1.79742 1.10280 0.97459 1.15601 1.93083 1.26717 1.29997 1.64030 1.80208 1.10777 1.08321 1.18935 1.24674 0.91704 0.88748 0.93300 1.84130 1.34074 1.31614 1.54937 1.21841 0.96293 1.00102 1.32218 0.88840 1.26564 1.02763 0.94844 0.95558 1.70090 1.39888 1.05657 1.36378 0.84506 0.74410 0.78872 0.78239 1.18654 1.18265 1.18129 1.21210 0.90930 0.99876 0.98832 0.89577 0.89267 0.91170 0.81575 0.83155 0.87500 0.90518 0.85005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.61 10.01 71.24 0.71 -0.89 15 2 C -0.09 -2.12 5.87 -19.90 -0.12 -2.24 15 3 C -0.09 -1.93 9.69 22.31 0.22 -1.71 15 4 C -0.12 -3.19 10.03 22.24 0.22 -2.96 15 5 C -0.09 -3.36 9.36 22.49 0.21 -3.15 15 6 C -0.06 -2.39 5.86 -20.04 -0.12 -2.51 15 7 C 0.15 6.73 6.90 44.21 0.30 7.04 15 8 N -0.29 -12.65 12.94 -44.73 -0.58 -13.23 15 9 O -0.01 -0.51 13.63 71.15 0.97 0.46 15 10 N -0.40 -20.98 11.85 -167.18 -1.98 -22.96 15 11 C 0.23 12.11 7.85 87.12 0.68 12.79 15 12 O -0.16 -9.00 8.82 -20.84 -0.18 -9.18 15 13 C -0.43 -24.56 9.73 67.93 0.66 -23.90 15 14 H 0.09 5.38 7.03 -2.91 -0.02 5.36 15 15 C 0.01 0.32 5.49 84.85 0.47 0.79 15 16 N -0.89 -48.96 13.67 21.62 0.30 -48.66 15 17 Si 1.02 40.97 29.55 68.60 2.03 43.00 15 18 H -0.26 -10.44 7.11 99.48 0.71 -9.73 15 19 H -0.26 -9.71 7.11 99.48 0.71 -9.00 15 20 H -0.26 -9.61 7.11 99.48 0.71 -8.90 15 21 C -0.09 -2.69 9.40 22.49 0.21 -2.48 15 22 H 0.09 1.05 8.14 -2.39 -0.02 1.03 15 23 H 0.09 0.96 8.08 -2.39 -0.02 0.95 15 24 H 0.07 1.02 8.08 -2.39 -0.02 1.00 15 25 H 0.17 2.22 8.06 -2.91 -0.02 2.20 15 26 H 0.15 3.41 8.06 -2.91 -0.02 3.38 15 27 H 0.11 4.55 7.31 -2.91 -0.02 4.53 15 28 H 0.29 14.17 8.31 -92.72 -0.77 13.40 15 29 H 0.13 3.74 8.06 -2.92 -0.02 3.72 15 Total: -1.00 -67.05 273.10 5.18 -61.87 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: 1.18 Total: 7.93 kcal Atomic # 6 Polarization: -22.69 SS G_CDS: 3.46 Total: -19.24 kcal Atomic # 7 Polarization: -82.58 SS G_CDS: -2.26 Total: -84.84 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.79 Total: -8.72 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 2.03 Total: 43.00 kcal Total: -67.05 5.18 -61.87 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259929375.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.915 kcal (2) G-P(sol) polarization free energy of solvation -67.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds