Wall clock time and date at job start Mon Mar 30 2020 03:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31145 * 1 3 3 Si 1.86806 * 119.99661 * 2 1 4 4 H 1.48494 * 109.47027 * 239.99629 * 3 2 1 5 5 H 1.48498 * 109.47093 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46860 * 120.00048 * 3 2 1 7 7 C 1.39616 * 120.00397 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00197 * 179.97438 * 7 2 1 9 9 C 1.41253 * 119.99761 * 0.02562 * 7 2 1 10 10 C 1.41900 * 126.61980 * 359.97438 * 9 7 2 11 11 N 1.30300 * 108.22114 * 179.97438 * 10 9 7 12 12 N 1.39855 * 109.47288 * 359.97438 * 11 10 9 13 13 C 1.40245 * 125.70168 * 179.97438 * 12 11 10 14 14 C 1.38738 * 120.09014 * 180.02562 * 13 12 11 15 15 C 1.38179 * 119.98145 * 179.97438 * 14 13 12 16 16 C 1.38298 * 120.17018 * 359.97438 * 15 14 13 17 17 C 1.38225 * 120.18005 * 0.02562 * 16 15 14 18 18 C 1.38576 * 120.01334 * 359.97438 * 17 16 15 19 19 O 1.35947 * 120.08525 * 179.97438 * 18 17 16 20 20 C 1.35142 * 108.60436 * 0.22793 * 12 11 10 21 21 O 1.35309 * 126.53417 * 179.77248 * 20 12 11 22 22 H 0.96996 * 120.00650 * 359.97438 * 1 2 3 23 23 H 1.08003 * 125.88865 * 359.97438 * 10 9 7 24 24 H 1.07996 * 120.00918 * 359.95413 * 14 13 12 25 25 H 1.07999 * 119.91020 * 180.02562 * 15 14 13 26 26 H 1.07992 * 119.90798 * 180.28033 * 16 15 14 27 27 H 1.08000 * 119.99292 * 179.97438 * 17 16 15 28 28 H 0.96692 * 114.00344 * 89.99662 * 19 18 17 29 29 H 0.96697 * 114.00008 * 89.99825 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3115 0.0000 0.0000 3 14 2.2454 1.6178 0.0000 4 1 3.0992 1.6965 -1.2124 5 1 1.2803 2.7465 0.0006 6 1 3.0991 1.6965 1.2126 7 6 2.0096 -1.2091 0.0005 8 1 3.0896 -1.2090 0.0001 9 6 1.3034 -2.4324 0.0005 10 6 -0.1062 -2.5960 0.0005 11 7 -0.3681 -3.8724 0.0000 12 7 0.8297 -4.5942 -0.0010 13 6 0.9429 -5.9921 -0.0013 14 6 2.1955 -6.5885 -0.0017 15 6 2.3045 -7.9660 -0.0015 16 6 1.1673 -8.7531 -0.0002 17 6 -0.0841 -8.1661 0.0002 18 6 -0.2021 -6.7854 0.0000 19 8 -1.4322 -6.2065 -0.0001 20 6 1.8601 -3.7197 0.0041 21 8 3.1777 -4.0274 0.0092 22 1 -0.4851 0.8400 0.0004 23 1 -0.8359 -1.7998 0.0009 24 1 3.0853 -5.9763 -0.0026 25 1 3.2801 -8.4291 -0.0014 26 1 1.2573 -9.8293 0.0045 27 1 -0.9701 -8.7837 0.0008 28 1 -1.7881 -6.0390 0.8832 29 1 3.5643 -4.1160 -0.8726 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259929748.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:57 Heat of formation + Delta-G solvation = 23.964476 kcal Electronic energy + Delta-G solvation = -17224.066904 eV Core-core repulsion = 14307.760024 eV Total energy + Delta-G solvation = -2916.306880 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.22442 -38.63522 -36.23470 -35.75960 -33.99922 -32.11109 -29.60271 -28.76243 -27.90833 -24.96801 -22.36835 -22.25610 -19.92338 -19.79950 -18.22323 -17.57217 -16.58056 -15.72635 -15.26542 -15.00579 -14.88630 -14.10755 -13.99141 -13.40476 -13.04370 -12.83881 -12.51652 -11.85388 -11.78658 -11.47864 -11.31067 -11.21602 -10.93445 -10.59627 -10.29570 -9.76565 -9.71036 -9.11570 -8.83644 -8.42296 -7.63362 -7.15774 -6.78495 -4.24133 1.46436 1.62208 2.86908 3.05499 3.08724 3.18144 3.51767 3.90854 4.02861 4.17609 4.74572 5.09065 5.19654 5.25154 5.42610 5.61575 5.80299 5.95658 6.28255 6.39028 6.63239 6.74150 6.81843 6.90462 7.12415 7.21906 7.27527 7.74388 7.87455 8.22915 8.33473 8.52660 8.80964 8.99451 9.13867 10.18883 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.044261 B = 0.006305 C = 0.005535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.452740 B = 4439.756234 C = 5057.368214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.067 3.933 3 Si 0.926 3.074 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.415 4.415 8 H 0.079 0.921 9 C 0.003 3.997 10 C 0.056 3.944 11 N -0.287 5.287 12 N -0.339 5.339 13 C 0.180 3.820 14 C -0.163 4.163 15 C -0.100 4.100 16 C -0.156 4.156 17 C -0.122 4.122 18 C 0.069 3.931 19 O -0.472 6.472 20 C 0.022 3.978 21 O -0.448 6.448 22 H 0.283 0.717 23 H 0.214 0.786 24 H 0.147 0.853 25 H 0.122 0.878 26 H 0.119 0.881 27 H 0.125 0.875 28 H 0.379 0.621 29 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.414 -8.240 0.146 8.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.147 4.147 3 Si 0.751 3.249 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.447 4.447 8 H 0.097 0.903 9 C -0.006 4.006 10 C -0.134 4.134 11 N -0.107 5.107 12 N -0.127 5.127 13 C 0.081 3.919 14 C -0.185 4.185 15 C -0.119 4.119 16 C -0.175 4.175 17 C -0.141 4.141 18 C 0.021 3.979 19 O -0.281 6.281 20 C -0.135 4.135 21 O -0.248 6.248 22 H 0.094 0.906 23 H 0.229 0.771 24 H 0.164 0.836 25 H 0.140 0.860 26 H 0.137 0.863 27 H 0.143 0.857 28 H 0.234 0.766 29 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 0.456 -8.830 0.152 8.843 hybrid contribution 1.111 1.289 -0.075 1.703 sum 1.567 -7.542 0.077 7.703 Atomic orbital electron populations 1.69438 1.07367 1.29209 1.39403 1.25858 0.94953 1.01423 0.92473 0.86057 0.79579 0.79444 0.79778 1.19107 1.20305 1.19058 1.18804 0.94448 0.88622 1.42815 0.90305 1.18073 0.92083 0.90606 0.99881 1.25379 0.97775 0.92471 0.97782 1.76994 1.02884 1.06164 1.24612 1.45347 1.05201 1.01752 1.60352 1.18201 0.94033 0.81043 0.98663 1.21254 0.96597 0.95336 1.05281 1.20883 0.98400 0.92759 0.99811 1.20796 0.92021 0.99363 1.05362 1.21180 0.98111 0.93173 1.01615 1.18073 0.84298 0.89871 1.05706 1.84891 1.28934 1.81711 1.32524 1.18591 0.79422 0.87614 1.27902 1.84879 1.17854 1.91067 1.31046 0.90638 0.77052 0.83606 0.85993 0.86293 0.85725 0.76573 0.80054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -20.26 10.32 55.53 0.57 -19.69 15 2 C 0.07 1.63 5.49 -17.33 -0.10 1.53 15 3 Si 0.93 18.47 29.56 -169.99 -5.02 13.44 15 4 H -0.27 -5.25 7.11 56.52 0.40 -4.85 15 5 H -0.28 -5.38 7.11 56.52 0.40 -4.98 15 6 H -0.27 -5.30 7.11 56.52 0.40 -4.90 15 7 C -0.41 -10.88 9.38 -37.92 -0.36 -11.24 15 8 H 0.08 2.01 7.84 -52.49 -0.41 1.60 15 9 C 0.00 0.08 5.95 -106.59 -0.63 -0.55 15 10 C 0.06 1.46 10.90 -16.80 -0.18 1.27 15 11 N -0.29 -7.22 10.46 30.97 0.32 -6.89 15 12 N -0.34 -8.28 3.78 -9.82 -0.04 -8.32 15 13 C 0.18 3.82 6.70 -83.43 -0.56 3.27 15 14 C -0.16 -2.99 9.39 -39.42 -0.37 -3.36 15 15 C -0.10 -1.48 10.04 -39.58 -0.40 -1.88 15 16 C -0.16 -2.17 10.04 -39.56 -0.40 -2.57 15 17 C -0.12 -1.88 9.98 -39.46 -0.39 -2.28 15 18 C 0.07 1.31 6.72 -39.06 -0.26 1.05 15 19 O -0.47 -9.02 11.54 -19.57 -0.23 -9.25 15 20 C 0.02 0.55 7.91 -15.34 -0.12 0.43 15 21 O -0.45 -9.84 10.79 -17.62 -0.19 -10.03 15 22 H 0.28 6.33 8.30 -40.82 -0.34 5.99 15 23 H 0.21 5.44 5.76 -52.48 -0.30 5.14 15 24 H 0.15 2.67 5.17 -52.49 -0.27 2.39 15 25 H 0.12 1.43 8.06 -52.49 -0.42 1.01 15 26 H 0.12 1.28 8.06 -52.49 -0.42 0.86 15 27 H 0.12 1.61 8.06 -52.49 -0.42 1.19 15 28 H 0.38 5.95 9.06 45.56 0.41 6.37 15 29 H 0.35 6.14 8.97 45.56 0.41 6.55 15 LS Contribution 259.55 15.07 3.91 3.91 Total: -1.00 -29.78 259.55 -5.01 -34.78 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -0.57 Total: 16.37 kcal Atomic # 6 Polarization: -10.55 SS G_CDS: -3.77 Total: -14.32 kcal Atomic # 7 Polarization: -35.76 SS G_CDS: 0.86 Total: -34.90 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: -0.42 Total: -19.28 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.02 Total: 13.44 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -29.78 -5.01 -34.78 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259929748.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.746 kcal (2) G-P(sol) polarization free energy of solvation -29.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds