Wall clock time and date at job start Mon Mar 30 2020 04:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35673 * 116.99751 * 2 1 4 4 N 1.32741 * 126.27357 * 0.33871 * 3 2 1 5 5 C 1.33120 * 109.00514 * 180.14600 * 4 3 2 6 6 C 1.39270 * 125.43435 * 179.82626 * 5 4 3 7 7 H 1.07995 * 119.99984 * 179.97438 * 6 5 4 8 8 C 1.40365 * 119.99766 * 359.69366 * 6 5 4 9 9 N 1.30604 * 119.99984 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99594 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47093 * 60.00152 * 10 8 6 12 12 H 1.48495 * 109.47002 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.47239 * 299.99872 * 10 8 6 14 14 O 1.34927 * 109.12830 * 359.56017 * 5 4 3 15 15 C 1.35232 * 107.67817 * 0.26361 * 14 5 4 16 16 C 1.46898 * 126.64101 * 179.97438 * 15 14 5 17 17 C 1.40086 * 119.78446 * 359.75230 * 16 15 14 18 18 C 1.38227 * 119.01657 * 179.77174 * 17 16 15 19 19 C 1.38905 * 118.56379 * 0.49550 * 18 17 16 20 20 C 1.38477 * 119.48056 * 359.74956 * 19 18 17 21 21 N 1.31607 * 120.95784 * 359.97438 * 20 19 18 22 22 H 1.08991 * 109.47043 * 180.02562 * 1 2 3 23 23 H 1.09010 * 109.46706 * 299.99981 * 1 2 3 24 24 H 1.08998 * 109.47278 * 59.99543 * 1 2 3 25 25 H 0.97000 * 119.99396 * 179.97438 * 9 8 6 26 26 H 1.08004 * 120.48830 * 0.02562 * 17 16 15 27 27 H 1.08002 * 120.71704 * 180.26792 * 18 17 16 28 28 H 1.08001 * 120.26254 * 179.72251 * 19 18 17 29 29 H 1.07997 * 119.52221 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 7 1.4479 2.3944 0.0063 5 6 2.3771 3.3477 0.0008 6 6 2.1280 4.7180 0.0013 7 1 2.9517 5.4165 -0.0031 8 6 0.8065 5.1911 0.0017 9 7 -0.1895 4.3463 0.0009 10 14 0.4726 7.0290 0.0031 11 1 1.0728 7.6422 -1.2089 12 1 -0.9934 7.2657 0.0026 13 1 1.0727 7.6403 1.2161 14 8 3.5986 2.7746 0.0005 15 6 3.4230 1.4337 0.0000 16 6 4.4779 0.4115 -0.0009 17 6 5.8237 0.8003 -0.0068 18 6 6.8034 -0.1748 -0.0028 19 6 6.4135 -1.5080 -0.0037 20 6 5.0652 -1.8237 -0.0032 21 7 4.1488 -0.8792 -0.0015 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -1.1027 4.6733 0.0015 26 1 6.0918 1.8466 -0.0101 27 1 7.8494 0.0941 -0.0028 28 1 7.1561 -2.2923 -0.0052 29 1 4.7613 -2.8600 -0.0043 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259931551.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:38 Heat of formation + Delta-G solvation = 11.894250 kcal Electronic energy + Delta-G solvation = -17050.560326 eV Core-core repulsion = 14133.730042 eV Total energy + Delta-G solvation = -2916.830284 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.09629 -39.03671 -37.40327 -34.25884 -32.22207 -31.85146 -31.16532 -28.77134 -26.88626 -25.26911 -22.80415 -22.44992 -20.68404 -20.22435 -17.83554 -16.78681 -16.40196 -15.36235 -15.27687 -15.13386 -15.09705 -14.07360 -14.03309 -13.78051 -13.15381 -13.03888 -12.58585 -11.99942 -11.81116 -11.50260 -11.29433 -11.11244 -10.78290 -10.76816 -10.59406 -9.91502 -9.32221 -8.88932 -8.79619 -8.73111 -8.47081 -7.03595 -6.92485 -4.89634 1.52446 1.95300 2.77129 2.88693 2.92177 3.19378 3.61171 3.99899 4.10128 4.37823 4.73043 5.04273 5.29685 5.31930 5.57533 5.73442 5.89982 5.95344 6.00932 6.08142 6.30470 6.39234 6.52408 6.58704 6.72300 6.81239 7.09070 7.40047 7.59750 7.70441 8.11282 8.16499 8.61967 8.77546 9.59307 9.86838 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.032787 B = 0.006568 C = 0.005488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.779156 B = 4261.972012 C = 5100.604276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.274 6.274 3 C 0.299 3.701 4 N -0.568 5.568 5 C 0.362 3.638 6 C -0.404 4.404 7 H 0.103 0.897 8 C 0.070 3.930 9 N -0.705 5.705 10 Si 0.935 3.065 11 H -0.259 1.259 12 H -0.273 1.273 13 H -0.259 1.259 14 O -0.233 6.233 15 C -0.221 4.221 16 C 0.275 3.725 17 C -0.201 4.201 18 C -0.066 4.066 19 C -0.237 4.237 20 C 0.117 3.883 21 N -0.492 5.492 22 H 0.082 0.918 23 H 0.052 0.948 24 H 0.051 0.949 25 H 0.286 0.714 26 H 0.127 0.873 27 H 0.122 0.878 28 H 0.120 0.880 29 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.477 -3.195 -0.020 4.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.181 6.181 3 C 0.121 3.879 4 N -0.311 5.311 5 C 0.185 3.815 6 C -0.436 4.436 7 H 0.121 0.879 8 C -0.158 4.158 9 N -0.327 5.327 10 Si 0.757 3.243 11 H -0.183 1.183 12 H -0.197 1.197 13 H -0.183 1.183 14 O -0.131 6.131 15 C -0.274 4.274 16 C 0.143 3.857 17 C -0.222 4.222 18 C -0.091 4.091 19 C -0.258 4.258 20 C -0.042 4.042 21 N -0.204 5.204 22 H 0.100 0.900 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.098 0.902 26 H 0.145 0.855 27 H 0.140 0.860 28 H 0.138 0.862 29 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 1.819 -3.502 -0.013 3.946 hybrid contribution 1.178 0.872 -0.006 1.465 sum 2.997 -2.630 -0.019 3.987 Atomic orbital electron populations 1.22728 0.79189 1.01154 1.02162 1.86239 1.20692 1.22738 1.88443 1.20755 0.88901 0.85831 0.92366 1.71369 1.30374 0.95579 1.33771 1.21680 0.75369 0.94088 0.90331 1.18352 0.94243 0.86930 1.44122 0.87920 1.26045 0.94945 1.01646 0.93192 1.69953 1.00433 1.36827 1.25504 0.85915 0.78369 0.79540 0.80442 1.18343 1.19721 1.18331 1.84537 1.33428 1.16339 1.78795 1.18773 0.90164 0.81153 1.37297 1.18056 0.88743 0.88248 0.90668 1.21965 0.93073 1.00356 1.06776 1.21263 0.98945 0.92901 0.95987 1.21842 0.97401 0.96652 1.09891 1.22529 0.88938 0.98157 0.94608 1.67695 1.37518 0.99703 1.15465 0.89989 0.92971 0.92976 0.90227 0.85493 0.86031 0.86208 0.83711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.86 10.71 101.05 1.08 1.94 15 2 O -0.27 -6.63 9.79 -18.72 -0.18 -6.82 15 3 C 0.30 8.03 7.75 -16.64 -0.13 7.90 15 4 N -0.57 -15.90 8.76 -12.98 -0.11 -16.02 15 5 C 0.36 10.02 7.69 -16.61 -0.13 9.89 15 6 C -0.40 -10.22 9.43 -38.40 -0.36 -10.58 15 7 H 0.10 2.36 7.85 -52.49 -0.41 1.95 15 8 C 0.07 1.64 5.50 -17.27 -0.10 1.55 15 9 N -0.71 -17.42 11.84 55.57 0.66 -16.76 15 10 Si 0.94 16.84 29.56 -169.99 -5.03 11.82 15 11 H -0.26 -4.58 7.11 56.52 0.40 -4.18 15 12 H -0.27 -4.75 7.11 56.52 0.40 -4.35 15 13 H -0.26 -4.58 7.11 56.52 0.40 -4.18 15 14 O -0.23 -6.29 10.61 1.34 0.01 -6.28 15 15 C -0.22 -5.83 7.17 -35.56 -0.25 -6.08 15 16 C 0.27 6.43 6.74 -83.08 -0.56 5.87 15 17 C -0.20 -4.02 9.78 -38.89 -0.38 -4.40 15 18 C -0.07 -1.08 10.16 -39.34 -0.40 -1.48 15 19 C -0.24 -3.67 10.11 -39.25 -0.40 -4.07 15 20 C 0.12 2.06 11.18 -17.56 -0.20 1.86 15 21 N -0.49 -10.85 9.46 -9.89 -0.09 -10.94 15 22 H 0.08 1.28 8.14 -51.93 -0.42 0.86 15 23 H 0.05 1.05 8.14 -51.92 -0.42 0.63 15 24 H 0.05 1.05 8.14 -51.93 -0.42 0.63 15 25 H 0.29 6.28 8.29 -40.82 -0.34 5.94 15 26 H 0.13 2.46 7.94 -52.48 -0.42 2.05 15 27 H 0.12 1.56 8.06 -52.49 -0.42 1.14 15 28 H 0.12 1.43 8.06 -52.49 -0.42 1.01 15 29 H 0.15 2.02 8.06 -52.49 -0.42 1.60 15 LS Contribution 270.25 15.07 4.07 4.07 Total: -1.00 -30.45 270.25 -4.99 -35.44 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -2.50 Total: 3.08 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: -1.82 Total: 2.40 kcal Atomic # 7 Polarization: -44.17 SS G_CDS: 0.45 Total: -43.72 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: -0.17 Total: -13.09 kcal Atomic # 14 Polarization: 16.84 SS G_CDS: -5.03 Total: 11.82 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -30.45 -4.99 -35.44 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259931551.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.335 kcal (2) G-P(sol) polarization free energy of solvation -30.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds