Wall clock time and date at job start Mon Mar 30 2020 04:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35673 * 116.99751 * 2 1 4 4 N 1.32741 * 126.27357 * 0.33871 * 3 2 1 5 5 C 1.33120 * 109.00514 * 180.14600 * 4 3 2 6 6 C 1.39270 * 125.43435 * 179.82626 * 5 4 3 7 7 H 1.07995 * 119.99984 * 179.97438 * 6 5 4 8 8 C 1.40365 * 119.99766 * 359.69366 * 6 5 4 9 9 N 1.30604 * 119.99984 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99594 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47093 * 60.00152 * 10 8 6 12 12 H 1.48495 * 109.47002 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.47239 * 299.99872 * 10 8 6 14 14 O 1.34927 * 109.12830 * 359.56017 * 5 4 3 15 15 C 1.35232 * 107.67817 * 0.26361 * 14 5 4 16 16 C 1.46898 * 126.64101 * 179.97438 * 15 14 5 17 17 C 1.40086 * 119.78446 * 359.75230 * 16 15 14 18 18 C 1.38227 * 119.01657 * 179.77174 * 17 16 15 19 19 C 1.38905 * 118.56379 * 0.49550 * 18 17 16 20 20 C 1.38477 * 119.48056 * 359.74956 * 19 18 17 21 21 N 1.31607 * 120.95784 * 359.97438 * 20 19 18 22 22 H 1.08991 * 109.47043 * 180.02562 * 1 2 3 23 23 H 1.09010 * 109.46706 * 299.99981 * 1 2 3 24 24 H 1.08998 * 109.47278 * 59.99543 * 1 2 3 25 25 H 0.97000 * 119.99396 * 179.97438 * 9 8 6 26 26 H 1.08004 * 120.48830 * 0.02562 * 17 16 15 27 27 H 1.08002 * 120.71704 * 180.26792 * 18 17 16 28 28 H 1.08001 * 120.26254 * 179.72251 * 19 18 17 29 29 H 1.07997 * 119.52221 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 7 1.4479 2.3944 0.0063 5 6 2.3771 3.3477 0.0008 6 6 2.1280 4.7180 0.0013 7 1 2.9517 5.4165 -0.0031 8 6 0.8065 5.1911 0.0017 9 7 -0.1895 4.3463 0.0009 10 14 0.4726 7.0290 0.0031 11 1 1.0728 7.6422 -1.2089 12 1 -0.9934 7.2657 0.0026 13 1 1.0727 7.6403 1.2161 14 8 3.5986 2.7746 0.0005 15 6 3.4230 1.4337 0.0000 16 6 4.4779 0.4115 -0.0009 17 6 5.8237 0.8003 -0.0068 18 6 6.8034 -0.1748 -0.0028 19 6 6.4135 -1.5080 -0.0037 20 6 5.0652 -1.8237 -0.0032 21 7 4.1488 -0.8792 -0.0015 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -1.1027 4.6733 0.0015 26 1 6.0918 1.8466 -0.0101 27 1 7.8494 0.0941 -0.0028 28 1 7.1561 -2.2923 -0.0052 29 1 4.7613 -2.8600 -0.0043 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259931551.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:38 Heat of formation + Delta-G solvation = -11.717035 kcal Electronic energy + Delta-G solvation = -17051.584188 eV Core-core repulsion = 14133.730042 eV Total energy + Delta-G solvation = -2917.854146 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.03379 -40.54432 -39.22152 -36.09004 -34.14727 -33.35350 -32.75007 -30.57815 -28.61104 -26.98117 -24.28376 -24.14269 -22.54411 -22.03874 -19.70560 -18.60965 -17.97016 -17.28825 -16.82925 -16.81991 -16.52232 -15.86863 -15.80130 -15.37890 -14.72685 -14.60559 -14.00612 -13.71841 -13.51002 -13.02771 -12.88712 -12.59540 -12.57996 -12.53293 -12.04141 -11.60226 -10.78517 -10.70657 -10.63993 -10.37576 -10.12368 -8.79290 -8.77685 -6.81419 -0.06198 0.53374 1.16305 1.39452 1.57316 1.61232 2.07496 2.24238 2.28496 2.60048 3.10389 3.16948 3.85564 3.98941 4.14040 4.18501 4.38259 4.42618 4.43667 4.48627 4.72343 4.84729 4.92784 5.01068 5.08437 5.34454 5.45479 5.70369 5.77877 5.98560 6.21825 6.31578 6.71953 7.25317 7.63962 8.14613 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.032787 B = 0.006568 C = 0.005488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.779156 B = 4261.972012 C = 5100.604276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 O -0.283 6.283 3 C 0.266 3.734 4 N -0.593 5.593 5 C 0.325 3.675 6 C -0.428 4.428 7 H 0.117 0.883 8 C 0.027 3.973 9 N -0.745 5.745 10 Si 1.021 2.979 11 H -0.251 1.251 12 H -0.262 1.262 13 H -0.251 1.251 14 O -0.243 6.243 15 C -0.239 4.239 16 C 0.234 3.766 17 C -0.210 4.210 18 C -0.059 4.059 19 C -0.202 4.202 20 C 0.102 3.898 21 N -0.520 5.520 22 H 0.129 0.871 23 H 0.039 0.961 24 H 0.039 0.961 25 H 0.297 0.703 26 H 0.122 0.878 27 H 0.167 0.833 28 H 0.173 0.827 29 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.405 -4.030 -0.023 6.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.191 6.191 3 C 0.091 3.909 4 N -0.336 5.336 5 C 0.148 3.852 6 C -0.460 4.460 7 H 0.135 0.865 8 C -0.197 4.197 9 N -0.368 5.368 10 Si 0.837 3.163 11 H -0.174 1.174 12 H -0.185 1.185 13 H -0.174 1.174 14 O -0.142 6.142 15 C -0.293 4.293 16 C 0.102 3.898 17 C -0.230 4.230 18 C -0.084 4.084 19 C -0.222 4.222 20 C -0.057 4.057 21 N -0.232 5.232 22 H 0.147 0.853 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.108 0.892 26 H 0.140 0.860 27 H 0.185 0.815 28 H 0.190 0.810 29 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 3.754 -4.387 -0.016 5.774 hybrid contribution 0.807 0.827 -0.006 1.155 sum 4.561 -3.561 -0.022 5.786 Atomic orbital electron populations 1.22920 0.77319 1.03761 1.00962 1.86200 1.22564 1.21700 1.88626 1.20986 0.89544 0.86250 0.94166 1.71268 1.30990 0.96174 1.35206 1.22333 0.75609 0.95175 0.92109 1.18948 0.96040 0.86398 1.44645 0.86503 1.27246 0.93642 1.07080 0.91748 1.70031 1.01321 1.39664 1.25786 0.84690 0.78688 0.72093 0.80825 1.17448 1.18541 1.17440 1.84480 1.33642 1.17133 1.78972 1.19548 0.91412 0.81365 1.36946 1.18116 0.89306 0.88397 0.94029 1.22083 0.92672 1.01359 1.06901 1.21789 1.00239 0.92449 0.93895 1.22459 0.97510 0.97543 1.04695 1.23290 0.89680 0.98835 0.93898 1.67601 1.39946 0.99810 1.15839 0.85294 0.94176 0.94167 0.89226 0.86014 0.81546 0.80990 0.80111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.87 10.71 113.37 1.21 3.08 15 2 O -0.28 -14.34 9.79 -89.91 -0.88 -15.22 15 3 C 0.27 15.18 7.75 84.89 0.66 15.84 15 4 N -0.59 -35.42 8.76 -420.42 -3.68 -39.10 15 5 C 0.32 19.14 7.69 84.75 0.65 19.79 15 6 C -0.43 -22.63 9.43 23.04 0.22 -22.41 15 7 H 0.12 5.56 7.85 -2.91 -0.02 5.54 15 8 C 0.03 1.31 5.50 85.39 0.47 1.78 15 9 N -0.75 -38.27 11.84 21.90 0.26 -38.01 15 10 Si 1.02 34.37 29.56 68.60 2.03 36.40 15 11 H -0.25 -8.05 7.11 99.48 0.71 -7.34 15 12 H -0.26 -8.24 7.11 99.48 0.71 -7.53 15 13 H -0.25 -8.05 7.11 99.48 0.71 -7.34 15 14 O -0.24 -14.05 10.61 -18.13 -0.19 -14.25 15 15 C -0.24 -13.39 7.17 24.88 0.18 -13.22 15 16 C 0.23 11.17 6.74 41.65 0.28 11.45 15 17 C -0.21 -8.25 9.78 22.72 0.22 -8.03 15 18 C -0.06 -1.67 10.16 22.43 0.23 -1.45 15 19 C -0.20 -5.19 10.11 22.49 0.23 -4.96 15 20 C 0.10 3.23 11.18 84.78 0.95 4.18 15 21 N -0.52 -22.72 9.46 -185.19 -1.75 -24.47 15 22 H 0.13 3.95 8.14 -2.39 -0.02 3.93 15 23 H 0.04 1.70 8.14 -2.38 -0.02 1.68 15 24 H 0.04 1.70 8.14 -2.39 -0.02 1.68 15 25 H 0.30 13.37 8.29 -92.71 -0.77 12.60 15 26 H 0.12 4.79 7.94 -2.91 -0.02 4.77 15 27 H 0.17 3.29 8.06 -2.91 -0.02 3.27 15 28 H 0.17 2.74 8.06 -2.91 -0.02 2.72 15 29 H 0.18 4.27 8.06 -2.91 -0.02 4.25 15 Total: -1.00 -72.62 270.25 2.25 -70.37 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: 1.18 Total: 18.22 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: 5.29 Total: 6.06 kcal Atomic # 7 Polarization: -96.41 SS G_CDS: -5.18 Total: -101.58 kcal Atomic # 8 Polarization: -28.40 SS G_CDS: -1.07 Total: -29.47 kcal Atomic # 14 Polarization: 34.37 SS G_CDS: 2.03 Total: 36.40 kcal Total: -72.62 2.25 -70.37 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259931551.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.657 kcal (2) G-P(sol) polarization free energy of solvation -72.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds