Wall clock time and date at job start Mon Mar 30 2020 03:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30508 * 1 3 3 Si 1.86800 * 120.00344 * 2 1 4 4 H 1.48497 * 109.47050 * 240.00312 * 3 2 1 5 5 H 1.48501 * 109.47053 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47217 * 120.00159 * 3 2 1 7 7 C 1.40463 * 119.99680 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00366 * 179.97438 * 7 2 1 9 9 C 1.40455 * 120.00287 * 359.97438 * 7 2 1 10 10 O 1.34698 * 126.74052 * 0.02660 * 9 7 2 11 11 N 1.20830 * 112.06861 * 179.97438 * 10 9 7 12 12 H 0.96998 * 124.16743 * 179.97438 * 11 10 9 13 13 C 1.34708 * 111.66760 * 0.02562 * 11 10 9 14 14 O 1.22040 * 126.97391 * 180.02562 * 13 11 10 15 15 C 1.39592 * 126.74539 * 179.71586 * 9 7 2 16 16 C 1.50693 * 128.15209 * 359.97438 * 15 9 7 17 17 C 1.50700 * 109.47522 * 95.00430 * 16 15 9 18 18 C 1.38674 * 120.41999 * 89.99293 * 17 16 15 19 19 C 1.38626 * 118.41702 * 180.02562 * 18 17 16 20 20 C 1.38224 * 119.16519 * 0.02562 * 19 18 17 21 21 N 1.31854 * 120.76204 * 359.97438 * 20 19 18 22 22 C 1.31887 * 121.72542 * 359.70963 * 21 20 19 23 23 H 0.97007 * 120.00089 * 359.97438 * 1 2 3 24 24 H 1.09009 * 109.46918 * 215.00002 * 16 15 9 25 25 H 1.09000 * 109.47472 * 334.99800 * 16 15 9 26 26 H 1.08004 * 120.78758 * 0.02807 * 18 17 16 27 27 H 1.08006 * 120.41423 * 180.02562 * 19 18 17 28 28 H 1.08003 * 119.61836 * 179.97438 * 20 19 18 29 29 H 1.07997 * 119.61854 * 180.30880 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3051 0.0000 0.0000 3 14 2.2392 1.6177 0.0000 4 1 3.0928 1.6963 -1.2125 5 1 1.2742 2.7464 0.0006 6 1 3.0929 1.6963 1.2124 7 6 2.0073 -1.2165 -0.0005 8 1 3.0873 -1.2166 -0.0010 9 6 1.3050 -2.4329 -0.0005 10 8 -0.0326 -2.5909 -0.0006 11 7 -0.3520 -3.7563 -0.0011 12 1 -1.2701 -4.0695 -0.0008 13 6 0.7238 -4.5669 -0.0009 14 8 0.7234 -5.7873 -0.0017 15 6 1.8562 -3.7154 -0.0066 16 6 3.3124 -4.1028 -0.0150 17 6 3.7733 -4.3553 1.3974 18 6 3.6811 -5.6239 1.9499 19 6 4.1167 -5.8093 3.2528 20 6 4.6244 -4.7312 3.9532 21 7 4.6970 -3.5385 3.3956 22 6 4.2978 -3.3267 2.1566 23 1 -0.4850 0.8401 0.0004 24 1 3.4441 -5.0083 -0.6075 25 1 3.9008 -3.2951 -0.4503 26 1 3.2795 -6.4478 1.3786 27 1 4.0601 -6.7839 3.7148 28 1 4.9655 -4.8672 4.9688 29 1 4.3774 -2.3369 1.7320 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259950405.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:12 Heat of formation + Delta-G solvation = 16.990708 kcal Electronic energy + Delta-G solvation = -17329.569227 eV Core-core repulsion = 14412.959941 eV Total energy + Delta-G solvation = -2916.609285 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -44.84271 -40.88790 -38.43083 -36.38885 -35.03456 -33.05807 -32.44225 -31.74157 -28.90196 -27.55253 -24.33374 -23.50403 -22.83364 -21.80943 -19.51191 -19.07549 -18.04522 -17.78882 -17.22874 -17.02514 -15.92421 -15.90520 -15.44582 -14.76090 -14.70245 -14.28957 -14.05735 -13.82406 -13.67435 -13.38455 -13.05515 -12.89795 -12.82737 -12.20809 -12.00888 -11.49314 -10.59252 -10.43898 -10.36995 -10.18025 -9.72136 -8.99423 -8.93383 -6.94416 0.34391 0.47479 0.98216 1.44021 1.58984 1.69478 2.05393 2.15897 2.37484 2.97756 3.06617 3.49027 3.70467 4.06091 4.18918 4.22411 4.32031 4.53450 4.83067 4.89561 4.96960 5.00136 5.15393 5.30508 5.32171 5.45407 5.71279 5.84824 5.94644 6.06594 6.26996 6.43787 7.14090 7.45279 7.94130 8.02749 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.019555 B = 0.009257 C = 0.006797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.505322 B = 3024.131534 C = 4118.242014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.031 3.969 3 Si 1.003 2.997 4 H -0.247 1.247 5 H -0.266 1.266 6 H -0.251 1.251 7 C -0.414 4.414 8 H 0.136 0.864 9 C 0.231 3.769 10 O -0.024 6.024 11 N -0.587 5.587 12 H 0.446 0.554 13 C 0.475 3.525 14 O -0.637 6.637 15 C -0.510 4.510 16 C 0.061 3.939 17 C -0.116 4.116 18 C -0.090 4.090 19 C -0.170 4.170 20 C 0.072 3.928 21 N -0.507 5.507 22 C 0.087 3.913 23 H 0.306 0.694 24 H 0.051 0.949 25 H 0.081 0.919 26 H 0.122 0.878 27 H 0.160 0.840 28 H 0.184 0.816 29 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.398 1.776 2.860 6.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.193 4.193 3 Si 0.821 3.179 4 H -0.170 1.170 5 H -0.191 1.191 6 H -0.175 1.175 7 C -0.442 4.442 8 H 0.154 0.846 9 C 0.177 3.823 10 O -0.035 6.035 11 N -0.278 5.278 12 H 0.295 0.705 13 C 0.285 3.715 14 O -0.531 6.531 15 C -0.517 4.517 16 C 0.022 3.978 17 C -0.118 4.118 18 C -0.116 4.116 19 C -0.189 4.189 20 C -0.085 4.085 21 N -0.215 5.215 22 C -0.069 4.069 23 H 0.118 0.882 24 H 0.070 0.930 25 H 0.099 0.901 26 H 0.140 0.860 27 H 0.177 0.823 28 H 0.200 0.800 29 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 5.317 2.126 3.340 6.630 hybrid contribution -1.190 -0.532 -0.633 1.449 sum 4.127 1.595 2.707 5.187 Atomic orbital electron populations 1.69611 1.09639 1.33105 1.28390 1.27326 0.95798 1.05855 0.90274 0.84884 0.78616 0.73316 0.81134 1.17043 1.19057 1.17501 1.19702 0.96147 0.86645 1.41718 0.84615 1.20529 0.78166 0.95407 0.88236 1.84354 1.25460 1.09433 1.84265 1.42964 1.10226 0.97303 1.77340 0.70516 1.18132 0.85291 0.87554 0.80566 1.90677 1.86839 1.12756 1.62863 1.20452 0.95306 0.91670 1.44321 1.17918 0.89292 1.00055 0.90486 1.21285 0.96792 0.94328 0.99365 1.21679 0.96549 0.97185 0.96221 1.22387 1.00021 1.01939 0.94591 1.23182 0.96705 0.87646 1.00992 1.67654 1.16948 1.25098 1.11845 1.22749 0.95124 0.99219 0.89775 0.88222 0.93019 0.90098 0.86027 0.82266 0.79951 0.82383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -34.82 12.06 21.91 0.26 -34.56 15 2 C 0.03 1.27 5.50 85.43 0.47 1.74 15 3 Si 1.00 30.47 29.56 68.60 2.03 32.50 15 4 H -0.25 -7.14 7.11 99.48 0.71 -6.43 15 5 H -0.27 -7.77 7.11 99.48 0.71 -7.07 15 6 H -0.25 -7.49 7.11 99.48 0.71 -6.78 15 7 C -0.41 -18.50 9.19 23.35 0.21 -18.29 15 8 H 0.14 5.40 7.41 -2.91 -0.02 5.38 15 9 C 0.23 11.44 6.90 23.14 0.16 11.60 15 10 O -0.02 -1.18 9.56 65.33 0.62 -0.56 15 11 N -0.59 -27.86 6.72 -179.84 -1.21 -29.07 15 12 H 0.45 17.79 8.96 -92.71 -0.83 16.96 15 13 C 0.47 24.95 8.44 85.10 0.72 25.67 15 14 O -0.64 -36.06 18.08 -5.45 -0.10 -36.16 15 15 C -0.51 -25.18 5.71 -18.69 -0.11 -25.29 15 16 C 0.06 2.57 5.83 29.10 0.17 2.74 15 17 C -0.12 -4.60 5.13 -19.77 -0.10 -4.70 15 18 C -0.09 -3.37 9.86 22.47 0.22 -3.15 15 19 C -0.17 -5.17 10.11 22.36 0.23 -4.95 15 20 C 0.07 2.17 11.18 84.69 0.95 3.11 15 21 N -0.51 -18.26 10.36 -195.85 -2.03 -20.29 15 22 C 0.09 3.30 10.86 84.67 0.92 4.22 15 23 H 0.31 12.02 8.29 -92.70 -0.77 11.25 15 24 H 0.05 2.19 8.10 -2.38 -0.02 2.17 15 25 H 0.08 3.06 7.58 -2.39 -0.02 3.04 15 26 H 0.12 4.70 8.06 -2.91 -0.02 4.68 15 27 H 0.16 3.64 8.06 -2.91 -0.02 3.62 15 28 H 0.18 3.98 8.06 -2.91 -0.02 3.96 15 29 H 0.16 5.60 8.06 -2.91 -0.02 5.58 15 Total: -1.00 -62.84 268.94 3.79 -59.05 By element: Atomic # 1 Polarization: 35.99 SS G_CDS: 0.37 Total: 36.35 kcal Atomic # 6 Polarization: -11.11 SS G_CDS: 3.84 Total: -7.27 kcal Atomic # 7 Polarization: -80.94 SS G_CDS: -2.97 Total: -83.91 kcal Atomic # 8 Polarization: -37.24 SS G_CDS: 0.53 Total: -36.72 kcal Atomic # 14 Polarization: 30.47 SS G_CDS: 2.03 Total: 32.50 kcal Total: -62.84 3.79 -59.05 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259950405.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.045 kcal (2) G-P(sol) polarization free energy of solvation -62.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds