Wall clock time and date at job start Mon Mar 30 2020 03:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31074 * 1 3 3 Si 1.86797 * 120.00421 * 2 1 4 4 H 1.48504 * 109.46982 * 85.01844 * 3 2 1 5 5 H 1.48501 * 109.46979 * 205.01900 * 3 2 1 6 6 H 1.48500 * 109.46831 * 325.01668 * 3 2 1 7 7 C 1.39752 * 119.99466 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00093 * 189.46276 * 7 2 1 9 9 C 1.40966 * 120.00016 * 9.46274 * 7 2 1 10 10 C 1.39193 * 126.84615 * 10.86336 * 9 7 2 11 11 N 1.35488 * 108.22077 * 179.97438 * 10 9 7 12 12 H 0.96996 * 125.02246 * 180.02562 * 11 10 9 13 13 N 1.39758 * 109.95883 * 359.97438 * 11 10 9 14 14 C 1.39836 * 125.56137 * 180.02562 * 13 11 10 15 15 C 1.38949 * 120.04441 * 179.70541 * 14 13 11 16 16 C 1.38115 * 120.03528 * 179.71920 * 15 14 13 17 17 C 1.38218 * 120.12803 * 0.54706 * 16 15 14 18 18 C 1.38765 * 120.08710 * 359.73056 * 17 16 15 19 19 O 1.35904 * 120.01906 * 179.97438 * 18 17 16 20 20 C 1.38624 * 119.96433 * 359.97438 * 18 17 16 21 21 C 1.34872 * 108.87461 * 359.70785 * 13 11 10 22 22 O 1.21645 * 126.68223 * 180.25743 * 21 13 11 23 23 H 0.97003 * 119.99221 * 359.97438 * 1 2 3 24 24 H 1.08004 * 125.88921 * 0.02562 * 10 9 7 25 25 H 1.07999 * 119.98279 * 359.96973 * 15 14 13 26 26 H 1.08006 * 119.93659 * 180.25140 * 16 15 14 27 27 H 1.08002 * 119.95789 * 179.69723 * 17 16 15 28 28 H 0.96696 * 113.99555 * 270.02153 * 19 18 17 29 29 H 1.07991 * 120.06029 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3107 0.0000 0.0000 3 14 2.2448 1.6176 0.0000 4 1 2.3871 2.1071 1.3948 5 1 3.5911 1.4118 -0.5921 6 1 1.4989 2.6199 -0.8027 7 6 2.0094 -1.2104 0.0005 8 1 3.0784 -1.2168 0.1543 9 6 1.3188 -2.4229 -0.1996 10 6 -0.0010 -2.5729 -0.6154 11 7 -0.2759 -3.8979 -0.6828 12 1 -1.1287 -4.2768 -0.9476 13 7 0.8511 -4.6383 -0.3155 14 6 0.9284 -6.0338 -0.2710 15 6 2.1135 -6.6532 0.1065 16 6 2.1879 -8.0314 0.1560 17 6 1.0882 -8.7981 -0.1804 18 6 -0.0963 -8.1851 -0.5637 19 8 -1.1766 -8.9402 -0.8947 20 6 -0.1769 -6.8019 -0.6088 21 6 1.8541 -3.7872 -0.0177 22 8 2.9792 -4.0853 0.3359 23 1 -0.4849 0.8401 0.0004 24 1 -0.6874 -1.7714 -0.8455 25 1 2.9757 -6.0565 0.3652 26 1 3.1087 -8.5112 0.4535 27 1 1.1509 -9.8757 -0.1455 28 1 -1.2227 -9.1709 -1.8326 29 1 -1.0978 -6.3232 -0.9072 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259955942.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:26 Heat of formation + Delta-G solvation = 3.275840 kcal Electronic energy + Delta-G solvation = -16933.164452 eV Core-core repulsion = 14015.960446 eV Total energy + Delta-G solvation = -2917.204007 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.26892 -40.37198 -38.00801 -37.71945 -35.65004 -33.64901 -31.32405 -30.83273 -29.77430 -27.13771 -24.26731 -23.77643 -22.02620 -21.35840 -20.32224 -18.83261 -17.91712 -17.36456 -17.04171 -16.70335 -16.59082 -16.14990 -15.76684 -15.36881 -14.84383 -14.44071 -14.29880 -13.78967 -13.20212 -13.15316 -13.11012 -12.87668 -12.84578 -12.25338 -11.84989 -11.64694 -11.43033 -10.86317 -10.47840 -9.86593 -9.19211 -8.71131 -8.43102 -5.94634 0.04023 0.18227 0.92571 1.23673 1.45941 1.49061 1.59399 2.29477 2.36059 2.66081 2.96222 3.41872 3.44078 3.77136 4.09960 4.20131 4.25385 4.42590 4.59542 4.81806 5.07248 5.10931 5.30412 5.40816 5.42409 5.46347 5.67462 5.83652 6.37444 6.53371 6.81630 6.95851 7.06609 7.20691 7.40943 8.61467 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.050258 B = 0.005512 C = 0.004993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.989121 B = 5078.542271 C = 5606.757730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.019 3.981 3 Si 0.983 3.017 4 H -0.272 1.272 5 H -0.273 1.273 6 H -0.262 1.262 7 C -0.444 4.444 8 H 0.051 0.949 9 C -0.149 4.149 10 C 0.025 3.975 11 N -0.503 5.503 12 H 0.443 0.557 13 N -0.361 5.361 14 C 0.167 3.833 15 C -0.189 4.189 16 C -0.061 4.061 17 C -0.167 4.167 18 C 0.143 3.857 19 O -0.500 6.500 20 C -0.197 4.197 21 C 0.490 3.510 22 O -0.585 6.585 23 H 0.284 0.716 24 H 0.207 0.793 25 H 0.128 0.872 26 H 0.162 0.838 27 H 0.164 0.836 28 H 0.415 0.585 29 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.678 -13.033 -4.287 14.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.188 4.188 3 Si 0.806 3.194 4 H -0.197 1.197 5 H -0.198 1.198 6 H -0.186 1.186 7 C -0.478 4.478 8 H 0.069 0.931 9 C -0.160 4.160 10 C -0.103 4.103 11 N -0.236 5.236 12 H 0.290 0.710 13 N -0.168 5.168 14 C 0.073 3.927 15 C -0.211 4.211 16 C -0.080 4.080 17 C -0.186 4.186 18 C 0.098 3.902 19 O -0.313 6.313 20 C -0.219 4.219 21 C 0.290 3.710 22 O -0.469 6.469 23 H 0.094 0.906 24 H 0.223 0.777 25 H 0.146 0.854 26 H 0.179 0.821 27 H 0.181 0.819 28 H 0.275 0.725 29 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -4.386 -13.086 -3.510 14.241 hybrid contribution 0.124 0.807 -0.450 0.932 sum -4.262 -12.279 -3.961 13.588 Atomic orbital electron populations 1.69513 1.07632 1.29432 1.42429 1.26231 0.95892 1.02787 0.93853 0.85155 0.78602 0.76923 0.78742 1.19706 1.19750 1.18595 1.18612 0.94329 0.90365 1.44523 0.93090 1.19347 0.95218 0.90559 1.10839 1.23236 0.98774 0.81937 1.06377 1.43079 1.05659 1.01423 1.73412 0.71028 1.45095 1.07540 1.02401 1.61791 1.18024 0.96243 0.79004 0.99439 1.21535 0.97445 0.96955 1.05139 1.21180 0.99939 0.90901 0.95974 1.21681 0.91420 1.02014 1.03474 1.18078 0.86971 0.87686 0.97493 1.84760 1.42621 1.70513 1.33437 1.21003 0.97785 0.94357 1.08715 1.19467 0.83349 0.88120 0.80019 1.90510 1.19759 1.82869 1.53764 0.90598 0.77686 0.85440 0.82073 0.81882 0.72518 0.84284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -43.63 10.66 21.81 0.23 -43.40 15 2 C 0.02 1.01 5.45 85.17 0.46 1.48 15 3 Si 0.98 41.09 29.57 68.60 2.03 43.11 15 4 H -0.27 -11.11 7.11 99.48 0.71 -10.40 15 5 H -0.27 -11.61 7.11 99.48 0.71 -10.90 15 6 H -0.26 -10.06 7.11 99.48 0.71 -9.36 15 7 C -0.44 -26.00 9.41 23.30 0.22 -25.78 15 8 H 0.05 3.10 7.86 -2.91 -0.02 3.08 15 9 C -0.15 -8.39 6.05 -19.88 -0.12 -8.51 15 10 C 0.02 1.18 10.91 84.36 0.92 2.10 15 11 N -0.50 -20.10 6.78 -54.88 -0.37 -20.48 15 12 H 0.44 13.34 7.78 -213.54 -1.66 11.68 15 13 N -0.36 -16.22 3.76 -306.09 -1.15 -17.37 15 14 C 0.17 6.35 6.67 38.16 0.25 6.60 15 15 C -0.19 -6.95 9.37 22.41 0.21 -6.74 15 16 C -0.06 -1.60 10.03 22.24 0.22 -1.38 15 17 C -0.17 -3.66 9.98 22.39 0.22 -3.44 15 18 C 0.14 3.44 6.70 22.49 0.15 3.59 15 19 O -0.50 -9.26 13.50 -92.47 -1.25 -10.51 15 20 C -0.20 -5.81 9.58 22.49 0.22 -5.59 15 21 C 0.49 26.94 8.04 86.72 0.70 27.64 15 22 O -0.59 -34.38 15.19 -4.17 -0.06 -34.44 15 23 H 0.28 13.07 8.30 -92.71 -0.77 12.30 15 24 H 0.21 9.62 6.12 -2.91 -0.02 9.60 15 25 H 0.13 5.56 5.42 -2.91 -0.02 5.54 15 26 H 0.16 3.14 8.06 -2.91 -0.02 3.12 15 27 H 0.16 2.44 8.06 -2.91 -0.02 2.42 15 28 H 0.41 3.29 9.06 -74.06 -0.67 2.61 15 29 H 0.14 3.57 6.88 -2.91 -0.02 3.55 15 Total: -1.00 -71.66 260.51 1.78 -69.88 By element: Atomic # 1 Polarization: 24.34 SS G_CDS: -1.10 Total: 23.23 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: 3.46 Total: -10.03 kcal Atomic # 7 Polarization: -79.95 SS G_CDS: -1.29 Total: -81.24 kcal Atomic # 8 Polarization: -43.64 SS G_CDS: -1.31 Total: -44.96 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 2.03 Total: 43.11 kcal Total: -71.66 1.78 -69.88 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259955942.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.159 kcal (2) G-P(sol) polarization free energy of solvation -71.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds