Wall clock time and date at job start Mon Mar 30 2020 04:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38670 * 119.97518 * 2 1 4 4 C 1.38711 * 118.06191 * 180.26562 * 3 2 1 5 5 C 1.39644 * 117.89461 * 359.46057 * 4 3 2 6 6 C 1.48480 * 120.17580 * 180.25481 * 5 4 3 7 7 N 1.30727 * 126.40786 * 359.69410 * 6 5 4 8 8 O 1.21288 * 110.10300 * 179.80308 * 7 6 5 9 9 C 1.33674 * 110.01848 * 0.46201 * 8 7 6 10 10 C 1.50699 * 126.43944 * 179.67734 * 9 8 7 11 11 C 1.50701 * 109.47274 * 270.03914 * 10 9 8 12 12 H 1.08005 * 119.99908 * 0.02562 * 11 10 9 13 13 C 1.37873 * 120.00161 * 179.97438 * 11 10 9 14 14 N 1.31512 * 120.00268 * 0.02562 * 13 11 10 15 15 Si 1.86807 * 119.99887 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47069 * 0.02562 * 15 13 11 17 17 H 1.48494 * 109.46929 * 120.00459 * 15 13 11 18 18 H 1.48503 * 109.46916 * 240.00550 * 15 13 11 19 19 N 1.30972 * 107.11602 * 359.71265 * 9 8 7 20 20 N 1.32688 * 119.64723 * 0.27651 * 5 4 3 21 21 N 1.28347 * 122.04386 * 0.02562 * 20 5 4 22 22 H 1.08999 * 109.47307 * 270.28252 * 1 2 3 23 23 H 1.09004 * 109.47424 * 30.28638 * 1 2 3 24 24 H 1.09002 * 109.47208 * 150.28478 * 1 2 3 25 25 H 1.08001 * 120.97066 * 359.97438 * 3 2 1 26 26 H 1.08002 * 121.05624 * 179.74100 * 4 3 2 27 27 H 1.08998 * 109.47361 * 30.04347 * 10 9 8 28 28 H 1.09003 * 109.46863 * 150.04586 * 10 9 8 29 29 H 0.96995 * 120.00230 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1998 1.2012 0.0000 4 6 3.5861 1.1549 -0.0057 5 6 4.1979 -0.1004 0.0006 6 6 5.6787 -0.2089 0.0006 7 7 6.5295 0.7836 -0.0104 8 8 7.6656 0.3589 -0.0028 9 6 7.6544 -0.9777 0.0040 10 6 8.8593 -1.8829 0.0075 11 6 9.2602 -2.1911 -1.4121 12 1 8.6989 -1.7730 -2.2347 13 6 10.3442 -3.0061 -1.6609 14 7 11.0280 -3.5149 -0.6593 15 14 10.8415 -3.3875 -3.4206 16 1 9.9179 -2.6976 -4.3567 17 1 12.2291 -2.9143 -3.6564 18 1 10.7731 -4.8535 -3.6476 19 7 6.3996 -1.3527 0.0063 20 7 3.4489 -1.1956 0.0060 21 7 2.1664 -1.1435 0.0053 22 1 -0.3634 0.0051 1.0276 23 1 -0.3634 0.8874 -0.5183 24 1 -0.3634 -0.8925 -0.5094 25 1 1.6753 2.1453 -0.0004 26 1 4.1739 2.0610 -0.0101 27 1 9.6846 -1.3873 0.5187 28 1 8.6154 -2.8104 0.5256 29 1 11.7903 -4.0885 -0.8344 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259964750.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:43 Heat of formation + Delta-G solvation = 116.646505 kcal Electronic energy + Delta-G solvation = -16350.087201 eV Core-core repulsion = 13470.092066 eV Total energy + Delta-G solvation = -2879.995134 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -44.93562 -41.12472 -35.62864 -34.32133 -33.88177 -33.12863 -31.73329 -28.68559 -28.48677 -25.37750 -24.13803 -23.56194 -22.71974 -20.93702 -17.89747 -17.66281 -17.20629 -16.35003 -15.95629 -15.67445 -15.35091 -14.80895 -13.92213 -13.45434 -13.33234 -13.29567 -12.65928 -12.53628 -12.38262 -11.54942 -11.46645 -11.26142 -11.02672 -10.82607 -10.45484 -10.44887 -10.24976 -10.08440 -9.77693 -9.57072 -8.94908 -8.62950 -6.26195 -4.31984 0.37455 0.62189 1.85377 2.77496 3.23487 3.25354 3.31335 3.36376 3.55899 3.62761 3.92787 4.18180 4.31588 4.36121 4.61504 4.69860 4.90067 5.12673 5.16178 5.21901 5.36656 5.54461 5.66608 5.86742 5.96454 6.41845 6.50818 7.07294 7.14923 7.67259 7.89112 8.54969 8.68164 8.71082 9.33174 10.84255 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.040445 B = 0.004529 C = 0.004331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.131502 B = 6180.599034 C = 6463.782033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.066 3.934 3 C -0.118 4.118 4 C -0.086 4.086 5 C 0.151 3.849 6 C 0.198 3.802 7 N -0.387 5.387 8 O 0.076 5.924 9 C 0.243 3.757 10 C 0.100 3.900 11 C -0.524 4.524 12 H 0.062 0.938 13 C 0.067 3.933 14 N -0.887 5.887 15 Si 0.907 3.093 16 H -0.271 1.271 17 H -0.280 1.280 18 H -0.280 1.280 19 N -0.473 5.473 20 N -0.190 5.190 21 N -0.237 5.237 22 H 0.085 0.915 23 H 0.080 0.920 24 H 0.084 0.916 25 H 0.156 0.844 26 H 0.158 0.842 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.757 10.153 2.011 18.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.078 4.078 3 C -0.147 4.147 4 C -0.117 4.117 5 C 0.006 3.994 6 C -0.074 4.074 7 N -0.098 5.098 8 O 0.015 5.985 9 C 0.025 3.975 10 C 0.061 3.939 11 C -0.563 4.563 12 H 0.081 0.919 13 C -0.137 4.137 14 N -0.524 5.524 15 Si 0.734 3.266 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.206 1.206 19 N -0.206 5.206 20 N -0.035 5.035 21 N -0.080 5.080 22 H 0.103 0.897 23 H 0.098 0.902 24 H 0.103 0.897 25 H 0.174 0.826 26 H 0.176 0.824 27 H 0.079 0.921 28 H 0.091 0.909 29 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -16.238 8.902 2.062 18.632 hybrid contribution 0.606 1.298 -0.932 1.709 sum -15.632 10.199 1.130 18.699 Atomic orbital electron populations 1.20695 0.87166 1.04213 1.03727 1.23085 0.99366 0.90668 0.94689 1.22217 0.93875 1.00080 0.98527 1.22372 0.95402 0.98727 0.95158 1.19572 0.89684 0.91441 0.98666 1.23003 0.94086 0.85919 1.04343 1.74724 0.90415 1.22940 1.21686 1.85261 1.22690 1.24821 1.65711 1.30319 0.96828 0.81417 0.88896 1.18305 0.83987 0.91216 1.00387 1.20820 1.13973 1.31538 0.89988 0.91946 1.24921 0.95626 0.95014 0.98121 1.69924 1.19331 1.32261 1.30900 0.86285 0.78426 0.78337 0.83566 1.19590 1.20612 1.20580 1.72228 1.01197 1.25535 1.21621 1.73383 0.98784 1.25292 1.05995 1.73200 1.00837 1.24450 1.09551 0.89670 0.90161 0.89716 0.82639 0.82435 0.92060 0.90936 0.92263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.67 10.19 36.00 0.37 -0.31 15 2 C 0.07 0.75 6.87 -82.36 -0.57 0.18 15 3 C -0.12 -1.16 9.86 -39.25 -0.39 -1.55 15 4 C -0.09 -1.11 9.84 -38.88 -0.38 -1.49 15 5 C 0.15 2.66 6.84 -82.75 -0.57 2.10 15 6 C 0.20 4.05 7.92 -156.13 -1.24 2.81 15 7 N -0.39 -7.65 11.90 30.96 0.37 -7.28 15 8 O 0.08 1.58 11.29 18.03 0.20 1.79 15 9 C 0.24 5.50 7.69 -12.99 -0.10 5.40 15 10 C 0.10 2.43 5.60 -29.03 -0.16 2.26 15 11 C -0.52 -14.06 9.09 -34.44 -0.31 -14.38 15 12 H 0.06 1.70 7.74 -52.48 -0.41 1.29 15 13 C 0.07 1.79 5.46 -17.82 -0.10 1.69 15 14 N -0.89 -24.56 13.29 55.43 0.74 -23.82 15 15 Si 0.91 20.84 29.54 -169.99 -5.02 15.82 15 16 H -0.27 -6.23 7.11 56.52 0.40 -5.83 15 17 H -0.28 -6.30 7.11 56.52 0.40 -5.90 15 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 15 19 N -0.47 -10.93 11.57 -9.89 -0.11 -11.05 15 20 N -0.19 -3.57 11.46 33.37 0.38 -3.19 15 21 N -0.24 -3.75 11.42 33.62 0.38 -3.36 15 22 H 0.08 0.47 8.14 -51.93 -0.42 0.05 15 23 H 0.08 0.34 8.09 -51.93 -0.42 -0.08 15 24 H 0.08 0.59 8.14 -51.93 -0.42 0.17 15 25 H 0.16 0.84 8.06 -52.49 -0.42 0.42 15 26 H 0.16 1.73 7.93 -52.49 -0.42 1.31 15 27 H 0.06 1.46 8.14 -51.93 -0.42 1.04 15 28 H 0.07 1.84 8.14 -51.93 -0.42 1.41 15 29 H 0.27 6.97 8.31 -40.82 -0.34 6.63 15 LS Contribution 273.85 15.07 4.13 4.13 Total: -1.00 -30.86 273.85 -4.87 -35.73 By element: Atomic # 1 Polarization: -2.99 SS G_CDS: -2.49 Total: -5.49 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: -3.44 Total: -3.27 kcal Atomic # 7 Polarization: -50.46 SS G_CDS: 1.76 Total: -48.71 kcal Atomic # 8 Polarization: 1.58 SS G_CDS: 0.20 Total: 1.79 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -30.86 -4.87 -35.73 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259964750.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.378 kcal (2) G-P(sol) polarization free energy of solvation -30.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds