Wall clock time and date at job start Mon Mar 30 2020 04:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38670 * 119.97518 * 2 1 4 4 C 1.38711 * 118.06191 * 180.26562 * 3 2 1 5 5 C 1.39644 * 117.89461 * 359.46057 * 4 3 2 6 6 C 1.48480 * 120.17580 * 180.25481 * 5 4 3 7 7 N 1.30727 * 126.40786 * 359.69410 * 6 5 4 8 8 O 1.21288 * 110.10300 * 179.80308 * 7 6 5 9 9 C 1.33674 * 110.01848 * 0.46201 * 8 7 6 10 10 C 1.50699 * 126.43944 * 179.67734 * 9 8 7 11 11 C 1.50701 * 109.47274 * 270.03914 * 10 9 8 12 12 H 1.08005 * 119.99908 * 0.02562 * 11 10 9 13 13 C 1.37873 * 120.00161 * 179.97438 * 11 10 9 14 14 N 1.31512 * 120.00268 * 0.02562 * 13 11 10 15 15 Si 1.86807 * 119.99887 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47069 * 0.02562 * 15 13 11 17 17 H 1.48494 * 109.46929 * 120.00459 * 15 13 11 18 18 H 1.48503 * 109.46916 * 240.00550 * 15 13 11 19 19 N 1.30972 * 107.11602 * 359.71265 * 9 8 7 20 20 N 1.32688 * 119.64723 * 0.27651 * 5 4 3 21 21 N 1.28347 * 122.04386 * 0.02562 * 20 5 4 22 22 H 1.08999 * 109.47307 * 270.28252 * 1 2 3 23 23 H 1.09004 * 109.47424 * 30.28638 * 1 2 3 24 24 H 1.09002 * 109.47208 * 150.28478 * 1 2 3 25 25 H 1.08001 * 120.97066 * 359.97438 * 3 2 1 26 26 H 1.08002 * 121.05624 * 179.74100 * 4 3 2 27 27 H 1.08998 * 109.47361 * 30.04347 * 10 9 8 28 28 H 1.09003 * 109.46863 * 150.04586 * 10 9 8 29 29 H 0.96995 * 120.00230 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1998 1.2012 0.0000 4 6 3.5861 1.1549 -0.0057 5 6 4.1979 -0.1004 0.0006 6 6 5.6787 -0.2089 0.0006 7 7 6.5295 0.7836 -0.0104 8 8 7.6656 0.3589 -0.0028 9 6 7.6544 -0.9777 0.0040 10 6 8.8593 -1.8829 0.0075 11 6 9.2602 -2.1911 -1.4121 12 1 8.6989 -1.7730 -2.2347 13 6 10.3442 -3.0061 -1.6609 14 7 11.0280 -3.5149 -0.6593 15 14 10.8415 -3.3875 -3.4206 16 1 9.9179 -2.6976 -4.3567 17 1 12.2291 -2.9143 -3.6564 18 1 10.7731 -4.8535 -3.6476 19 7 6.3996 -1.3527 0.0063 20 7 3.4489 -1.1956 0.0060 21 7 2.1664 -1.1435 0.0053 22 1 -0.3634 0.0051 1.0276 23 1 -0.3634 0.8874 -0.5183 24 1 -0.3634 -0.8925 -0.5094 25 1 1.6753 2.1453 -0.0004 26 1 4.1739 2.0610 -0.0101 27 1 9.6846 -1.3873 0.5187 28 1 8.6154 -2.8104 0.5256 29 1 11.7903 -4.0885 -0.8344 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259964750.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:42 Heat of formation + Delta-G solvation = 94.286055 kcal Electronic energy + Delta-G solvation = -16351.056823 eV Core-core repulsion = 13470.092066 eV Total energy + Delta-G solvation = -2880.964756 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -46.58399 -42.18205 -37.19354 -36.02321 -34.95341 -34.62870 -33.31482 -30.45877 -29.47807 -26.67082 -25.97260 -24.65072 -24.19993 -22.47330 -19.42177 -19.24912 -18.43904 -18.27381 -17.34449 -16.76957 -16.56306 -16.40009 -15.28345 -14.80785 -14.49463 -14.29604 -14.14440 -14.03754 -13.35190 -13.19600 -13.08098 -12.87576 -12.64720 -12.31268 -12.22649 -12.05172 -11.96641 -11.41685 -11.13418 -10.82483 -10.68394 -10.43876 -8.32176 -6.45329 -0.77612 -0.33704 0.23905 1.23548 1.42266 1.44294 1.55996 1.79345 1.99479 2.38311 2.41364 2.68578 3.04046 3.21838 3.42991 3.51951 3.71222 3.89717 4.09054 4.47753 4.53014 4.70779 4.77160 4.78049 4.93064 5.05550 5.07947 5.17365 5.30399 5.57681 5.85545 6.58811 7.00423 7.23394 7.48355 8.78942 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.040445 B = 0.004529 C = 0.004331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.131502 B = 6180.599034 C = 6463.782033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.072 3.928 3 C -0.090 4.090 4 C -0.087 4.087 5 C 0.115 3.885 6 C 0.203 3.797 7 N -0.378 5.378 8 O 0.072 5.928 9 C 0.240 3.760 10 C 0.109 3.891 11 C -0.544 4.544 12 H 0.052 0.948 13 C 0.022 3.978 14 N -0.914 5.914 15 Si 0.971 3.029 16 H -0.273 1.273 17 H -0.268 1.268 18 H -0.275 1.275 19 N -0.502 5.502 20 N -0.239 5.239 21 N -0.273 5.273 22 H 0.104 0.896 23 H 0.117 0.883 24 H 0.079 0.921 25 H 0.215 0.785 26 H 0.176 0.824 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.897 12.112 1.305 21.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.073 4.073 3 C -0.118 4.118 4 C -0.116 4.116 5 C -0.030 4.030 6 C -0.069 4.069 7 N -0.089 5.089 8 O 0.014 5.986 9 C 0.021 3.979 10 C 0.070 3.930 11 C -0.583 4.583 12 H 0.071 0.929 13 C -0.179 4.179 14 N -0.552 5.552 15 Si 0.795 3.205 16 H -0.197 1.197 17 H -0.193 1.193 18 H -0.200 1.200 19 N -0.235 5.235 20 N -0.082 5.082 21 N -0.116 5.116 22 H 0.122 0.878 23 H 0.136 0.864 24 H 0.098 0.902 25 H 0.232 0.768 26 H 0.194 0.806 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -18.367 10.864 1.365 21.383 hybrid contribution 1.043 0.765 -0.668 1.455 sum -17.324 11.629 0.697 20.877 Atomic orbital electron populations 1.20922 0.83536 1.05833 1.05332 1.23938 1.01566 0.90062 0.91707 1.22851 0.92402 1.01769 0.94800 1.22636 0.97049 0.97285 0.94617 1.19657 0.88110 0.93458 1.01824 1.23549 0.95721 0.84861 1.02792 1.74672 0.89864 1.22360 1.22052 1.85242 1.23431 1.23889 1.65996 1.29837 0.96382 0.81967 0.89709 1.18010 0.84704 0.90989 0.99310 1.21027 1.14386 1.32097 0.90744 0.92933 1.25725 0.95428 0.94611 1.02119 1.70001 1.19765 1.32642 1.32805 0.85308 0.78403 0.78177 0.78621 1.19708 1.19285 1.20036 1.72201 1.01663 1.27313 1.22329 1.73240 1.00384 1.26827 1.07772 1.73104 0.99791 1.27166 1.11545 0.87795 0.86411 0.90237 0.76841 0.80609 0.91925 0.92589 0.91747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.90 10.19 71.24 0.73 -0.18 15 2 C 0.07 1.41 6.87 42.64 0.29 1.70 15 3 C -0.09 -1.37 9.86 22.49 0.22 -1.14 15 4 C -0.09 -2.02 9.84 22.72 0.22 -1.80 15 5 C 0.12 4.07 6.84 42.09 0.29 4.36 15 6 C 0.20 8.46 7.92 137.33 1.09 9.55 15 7 N -0.38 -15.04 11.90 -59.20 -0.70 -15.74 15 8 O 0.07 3.09 11.29 74.57 0.84 3.93 15 9 C 0.24 11.24 7.69 88.36 0.68 11.92 15 10 C 0.11 5.51 5.60 29.10 0.16 5.67 15 11 C -0.54 -29.92 9.09 25.60 0.23 -29.69 15 12 H 0.05 2.93 7.74 -2.91 -0.02 2.91 15 13 C 0.02 1.20 5.46 84.65 0.46 1.66 15 14 N -0.91 -51.20 13.29 21.45 0.28 -50.91 15 15 Si 0.97 42.82 29.54 68.60 2.03 44.84 15 16 H -0.27 -11.97 7.11 99.48 0.71 -11.26 15 17 H -0.27 -11.22 7.11 99.48 0.71 -10.52 15 18 H -0.27 -11.84 7.11 99.48 0.71 -11.14 15 19 N -0.50 -24.08 11.57 -302.57 -3.50 -27.58 15 20 N -0.24 -9.15 11.46 -48.34 -0.55 -9.70 15 21 N -0.27 -8.51 11.42 -47.56 -0.54 -9.05 15 22 H 0.10 0.67 8.14 -2.39 -0.02 0.65 15 23 H 0.12 0.27 8.09 -2.38 -0.02 0.25 15 24 H 0.08 0.87 8.14 -2.39 -0.02 0.86 15 25 H 0.21 0.74 8.06 -2.91 -0.02 0.72 15 26 H 0.18 3.35 7.93 -2.91 -0.02 3.32 15 27 H 0.06 3.10 8.14 -2.39 -0.02 3.08 15 28 H 0.06 2.99 8.14 -2.39 -0.02 2.97 15 29 H 0.27 14.26 8.31 -92.71 -0.77 13.49 15 Total: -1.00 -70.24 273.85 3.41 -66.83 By element: Atomic # 1 Polarization: -5.85 SS G_CDS: 1.18 Total: -4.67 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: 4.38 Total: 2.05 kcal Atomic # 7 Polarization: -107.97 SS G_CDS: -5.02 Total: -112.99 kcal Atomic # 8 Polarization: 3.09 SS G_CDS: 0.84 Total: 3.93 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.84 kcal Total: -70.24 3.41 -66.83 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259964750.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.116 kcal (2) G-P(sol) polarization free energy of solvation -70.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds