Wall clock time and date at job start Mon Mar 30 2020 04:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31494 * 1 3 3 Si 1.86800 * 120.00088 * 2 1 4 4 H 1.48498 * 109.47112 * 270.00035 * 3 2 1 5 5 H 1.48498 * 109.47011 * 30.00303 * 3 2 1 6 6 H 1.48499 * 109.47134 * 149.99925 * 3 2 1 7 7 C 1.38878 * 120.00225 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00675 * 179.97438 * 7 2 1 9 9 N 1.36905 * 119.99926 * 359.97438 * 7 2 1 10 10 C 1.38027 * 120.00039 * 179.72645 * 9 7 2 11 11 N 1.33359 * 120.96506 * 359.71763 * 10 9 7 12 12 C 1.31919 * 120.90587 * 179.71114 * 11 10 9 13 13 C 1.50701 * 118.54120 * 180.29382 * 12 11 10 14 14 C 1.53001 * 117.50156 * 189.02959 * 13 12 11 15 15 C 1.52995 * 117.49737 * 120.36861 * 13 12 11 16 16 N 1.31838 * 122.91925 * 0.59257 * 12 11 10 17 17 C 1.32540 * 120.67499 * 359.70408 * 16 12 11 18 18 O 1.34074 * 136.40458 * 179.97438 * 17 16 12 19 19 N 1.20986 * 112.96985 * 180.02562 * 18 17 16 20 20 C 1.30215 * 113.39380 * 0.02562 * 19 18 17 21 21 C 1.39767 * 120.96446 * 179.97438 * 10 9 7 22 22 H 0.97008 * 120.00345 * 359.97438 * 1 2 3 23 23 H 0.97005 * 119.99802 * 359.97438 * 9 7 2 24 24 H 1.09004 * 115.54760 * 334.69760 * 13 12 11 25 25 H 1.08999 * 117.49486 * 0.02562 * 14 13 12 26 26 H 1.08991 * 117.50127 * 145.02080 * 14 13 12 27 27 H 1.09002 * 117.49970 * 214.98052 * 15 13 12 28 28 H 1.08995 * 117.50322 * 359.97438 * 15 13 12 29 29 H 1.07999 * 127.37014 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3149 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4464 2.6526 0.7001 6 1 3.5465 1.4401 0.7000 7 6 2.0094 -1.2027 -0.0005 8 1 3.0894 -1.2028 -0.0010 9 7 1.3249 -2.3883 -0.0005 10 6 2.0150 -3.5837 -0.0068 11 7 3.3484 -3.6061 -0.0185 12 6 4.0069 -4.7492 -0.0188 13 6 5.5134 -4.7123 -0.0255 14 6 6.2516 -6.0354 -0.2387 15 6 6.2416 -5.3782 1.1437 16 7 3.4055 -5.9224 -0.0191 17 6 2.0827 -6.0042 -0.0134 18 8 1.1706 -6.9869 -0.0122 19 7 0.0329 -6.5752 -0.0063 20 6 -0.0465 -5.2755 -0.0029 21 6 1.3367 -4.8057 -0.0064 22 1 -0.4851 0.8401 0.0004 23 1 0.3548 -2.3883 0.0002 24 1 5.9597 -3.8129 -0.4499 25 1 5.6475 -6.9325 -0.3745 26 1 7.1836 -6.0065 -0.8029 27 1 7.1672 -4.9172 1.4884 28 1 5.6310 -5.8426 1.9181 29 1 -0.9432 -4.6735 0.0020 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260009302.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:46 Heat of formation + Delta-G solvation = 113.910806 kcal Electronic energy + Delta-G solvation = -17052.678099 eV Core-core repulsion = 14172.564336 eV Total energy + Delta-G solvation = -2880.113763 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -45.45962 -41.21002 -38.43283 -37.08011 -34.79910 -34.06760 -33.17351 -31.14684 -27.60716 -26.35605 -25.11907 -23.16938 -22.81116 -22.01618 -20.58954 -19.91628 -18.62674 -18.23042 -18.11946 -16.65268 -16.39318 -16.12834 -15.51606 -15.21203 -15.01119 -14.78175 -13.65411 -13.63127 -13.30561 -12.78452 -12.75243 -12.57783 -12.22978 -12.11808 -11.72914 -11.59162 -11.55649 -11.21254 -10.91375 -10.41739 -9.95915 -9.34561 -8.79015 -6.04336 -0.14458 0.36839 1.19947 1.41828 1.44647 1.49388 1.56062 2.13453 2.57230 2.62887 2.99537 3.12847 3.34833 3.43747 3.50951 3.83869 4.00416 4.15683 4.25779 4.40396 4.58934 4.89750 4.92411 5.04659 5.16711 5.29398 5.34732 5.48190 5.69223 6.13609 6.52835 6.94754 7.04810 7.27564 7.66565 8.35093 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.019292 B = 0.008059 C = 0.005776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.016887 B = 3473.385363 C = 4846.535098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C -0.006 4.006 3 Si 1.008 2.992 4 H -0.267 1.267 5 H -0.272 1.272 6 H -0.259 1.259 7 C -0.312 4.312 8 H 0.115 0.885 9 N -0.480 5.480 10 C 0.397 3.603 11 N -0.603 5.603 12 C 0.420 3.580 13 C -0.117 4.117 14 C -0.137 4.137 15 C -0.142 4.142 16 N -0.597 5.597 17 C 0.273 3.727 18 O 0.053 5.947 19 N -0.370 5.370 20 C 0.076 3.924 21 C -0.383 4.383 22 H 0.290 0.710 23 H 0.412 0.588 24 H 0.136 0.864 25 H 0.094 0.906 26 H 0.128 0.872 27 H 0.129 0.871 28 H 0.080 0.920 29 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.779 -3.084 0.378 7.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.211 4.211 3 Si 0.830 3.170 4 H -0.192 1.192 5 H -0.197 1.197 6 H -0.183 1.183 7 C -0.444 4.444 8 H 0.133 0.867 9 N -0.081 5.081 10 C 0.144 3.856 11 N -0.335 5.335 12 C 0.149 3.851 13 C -0.137 4.137 14 C -0.174 4.174 15 C -0.181 4.181 16 N -0.337 5.337 17 C 0.085 3.915 18 O 0.008 5.992 19 N -0.087 5.087 20 C -0.111 4.111 21 C -0.400 4.400 22 H 0.100 0.900 23 H 0.249 0.751 24 H 0.154 0.846 25 H 0.113 0.887 26 H 0.146 0.854 27 H 0.148 0.852 28 H 0.098 0.902 29 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 6.578 -3.679 0.371 7.546 hybrid contribution -1.306 1.422 -0.018 1.931 sum 5.272 -2.256 0.353 5.746 Atomic orbital electron populations 1.69685 1.07504 1.31079 1.44511 1.26453 0.96587 1.03487 0.94554 0.84675 0.78217 0.75030 0.79122 1.19191 1.19660 1.18336 1.20361 0.94398 0.82213 1.47397 0.86698 1.40996 1.08691 1.02473 1.55990 1.17444 0.88115 0.84036 0.95980 1.67875 1.05940 1.30089 1.29627 1.22359 0.96340 0.80886 0.85502 1.20734 0.83811 1.00542 1.08633 1.23063 1.01384 0.94168 0.98832 1.23030 1.01622 1.02070 0.91341 1.66933 1.04573 1.29385 1.32839 1.21661 0.90887 0.85964 0.92966 1.84668 1.09168 1.31510 1.73821 1.73534 0.97387 1.14682 1.23127 1.25793 0.97120 0.90282 0.97923 1.20954 0.95783 0.96088 1.27196 0.89973 0.75144 0.84613 0.88706 0.85404 0.85243 0.90153 0.75789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -42.46 13.05 21.66 0.28 -42.17 15 2 C -0.01 -0.26 5.50 84.90 0.47 0.21 15 3 Si 1.01 36.60 29.55 68.60 2.03 38.63 15 4 H -0.27 -9.47 7.11 99.48 0.71 -8.77 15 5 H -0.27 -9.52 7.11 99.48 0.71 -8.82 15 6 H -0.26 -9.26 7.11 99.48 0.71 -8.55 15 7 C -0.31 -15.22 9.72 84.05 0.82 -14.40 15 8 H 0.12 5.71 7.12 -2.91 -0.02 5.69 15 9 N -0.48 -22.72 5.40 -188.77 -1.02 -23.74 15 10 C 0.40 18.64 7.48 133.26 1.00 19.63 15 11 N -0.60 -27.90 9.17 -185.34 -1.70 -29.60 15 12 C 0.42 17.35 7.30 138.70 1.01 18.36 15 13 C -0.12 -3.63 6.22 -11.54 -0.07 -3.70 15 14 C -0.14 -3.32 10.00 30.62 0.31 -3.01 15 15 C -0.14 -3.50 10.24 30.62 0.31 -3.19 15 16 N -0.60 -25.34 9.31 -301.26 -2.80 -28.14 15 17 C 0.27 11.96 8.82 85.31 0.75 12.71 15 18 O 0.05 2.20 11.11 71.23 0.79 2.99 15 19 N -0.37 -14.37 11.96 -53.18 -0.64 -15.01 15 20 C 0.08 2.81 12.45 86.97 1.08 3.90 15 21 C -0.38 -16.72 6.49 -20.15 -0.13 -16.85 15 22 H 0.29 12.81 8.31 -92.70 -0.77 12.04 15 23 H 0.41 18.86 7.91 -92.70 -0.73 18.13 15 24 H 0.14 3.89 8.14 -2.38 -0.02 3.87 15 25 H 0.09 2.64 7.51 -2.39 -0.02 2.62 15 26 H 0.13 2.24 8.14 -2.39 -0.02 2.22 15 27 H 0.13 2.35 8.14 -2.39 -0.02 2.33 15 28 H 0.08 2.23 8.14 -2.39 -0.02 2.21 15 29 H 0.23 6.54 8.06 -2.91 -0.02 6.52 15 Total: -1.00 -56.84 266.55 2.97 -53.87 By element: Atomic # 1 Polarization: 29.02 SS G_CDS: 0.48 Total: 29.49 kcal Atomic # 6 Polarization: 8.13 SS G_CDS: 5.54 Total: 13.67 kcal Atomic # 7 Polarization: -132.79 SS G_CDS: -5.87 Total: -138.66 kcal Atomic # 8 Polarization: 2.20 SS G_CDS: 0.79 Total: 2.99 kcal Atomic # 14 Polarization: 36.60 SS G_CDS: 2.03 Total: 38.63 kcal Total: -56.84 2.97 -53.87 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260009302.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.785 kcal (2) G-P(sol) polarization free energy of solvation -56.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds