Wall clock time and date at job start Mon Mar 30 2020 04:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37845 * 119.88603 * 2 1 4 4 C 1.39901 * 118.61959 * 359.94863 * 3 2 1 5 5 H 1.07999 * 119.99932 * 353.17245 * 4 3 2 6 6 C 1.40416 * 120.00216 * 173.17307 * 4 3 2 7 7 N 1.30533 * 119.99806 * 6.30850 * 6 4 3 8 8 Si 1.86802 * 119.99933 * 186.31694 * 6 4 3 9 9 H 1.48498 * 109.47024 * 94.98633 * 8 6 4 10 10 H 1.48500 * 109.46648 * 214.98289 * 8 6 4 11 11 H 1.48498 * 109.47079 * 334.98222 * 8 6 4 12 12 N 1.32274 * 122.76238 * 179.97438 * 3 2 1 13 13 C 1.33627 * 121.72606 * 359.97438 * 12 3 2 14 14 C 1.41092 * 121.41815 * 180.23643 * 13 12 3 15 15 O 1.35662 * 120.25511 * 0.03872 * 14 13 12 16 16 C 1.38313 * 119.48230 * 180.26670 * 14 13 12 17 17 C 1.38627 * 120.75485 * 359.49399 * 16 14 13 18 18 C 1.38343 * 120.77346 * 0.25887 * 17 16 14 19 19 C 1.38911 * 119.79693 * 359.97438 * 18 17 16 20 20 C 1.35343 * 119.87724 * 179.97438 * 2 1 3 21 21 O 1.21679 * 121.22897 * 0.04115 * 20 2 1 22 22 H 1.09002 * 109.47429 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47427 * 300.02896 * 1 2 3 24 24 H 1.09005 * 109.46941 * 60.02157 * 1 2 3 25 25 H 0.97003 * 119.99852 * 179.97438 * 7 6 4 26 26 H 0.96694 * 113.99923 * 270.22717 * 15 14 13 27 27 H 1.08004 * 119.62416 * 179.77674 * 16 14 13 28 28 H 1.07998 * 119.61371 * 180.27620 * 17 16 14 29 29 H 1.07996 * 120.10177 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1518 1.1951 0.0000 4 6 1.4210 2.3881 -0.0011 5 1 0.3471 2.3633 -0.1131 6 6 2.0836 3.6176 0.1434 7 7 3.3882 3.6584 0.1550 8 14 1.0980 5.1947 0.3193 9 1 0.9331 5.5173 1.7593 10 1 1.8156 6.3047 -0.3577 11 1 -0.2378 5.0157 -0.3042 12 7 3.4729 1.2615 0.0005 13 6 4.2317 0.1616 0.0015 14 6 5.6405 0.2400 0.0070 15 8 6.2578 1.4480 0.0122 16 6 6.3870 -0.9243 0.0023 17 6 5.7668 -2.1641 0.0028 18 6 4.3871 -2.2654 0.0026 19 6 3.6105 -1.1137 0.0025 20 6 2.1392 -1.1735 0.0005 21 8 1.5512 -2.2389 0.0003 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5143 0.8897 24 1 -0.3633 0.5135 -0.8902 25 1 3.8460 4.5079 0.2545 26 1 6.4370 1.8018 -0.8696 27 1 7.4656 -0.8670 0.0029 28 1 6.3677 -3.0615 0.0036 29 1 3.9153 -3.2368 0.0026 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260009919.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:18 Heat of formation + Delta-G solvation = -30.847845 kcal Electronic energy + Delta-G solvation = -17606.651282 eV Core-core repulsion = 14687.967562 eV Total energy + Delta-G solvation = -2918.683721 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.12484 -37.92159 -36.49207 -35.35800 -33.76408 -32.88262 -29.58450 -28.77026 -26.84251 -26.25276 -22.72605 -22.29858 -20.69945 -18.51226 -17.83049 -17.12358 -16.13611 -15.84266 -15.10509 -15.01675 -14.20028 -14.16699 -13.90980 -13.32953 -13.07928 -12.56744 -12.04072 -11.93559 -11.78819 -11.60741 -11.43881 -11.10391 -10.91866 -10.71508 -10.56768 -9.85610 -9.45949 -9.02963 -8.81647 -8.06345 -8.00116 -6.89447 -6.84423 -5.12757 1.79343 1.98043 2.83310 2.86487 2.90803 3.51989 3.55917 3.77885 3.81281 4.55060 5.16049 5.41227 5.50225 5.59886 5.77695 5.94738 6.01327 6.14182 6.18585 6.25626 6.52139 6.61928 6.73813 6.83856 7.13285 7.18430 7.38421 7.52185 7.73279 7.88640 8.02915 8.31386 8.74711 8.91046 9.77036 9.93593 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.023064 B = 0.010000 C = 0.007012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.717344 B = 2799.424533 C = 3991.929711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.567 5.567 3 C 0.433 3.567 4 C -0.398 4.398 5 H 0.099 0.901 6 C 0.061 3.939 7 N -0.656 5.656 8 Si 0.921 3.079 9 H -0.265 1.265 10 H -0.270 1.270 11 H -0.258 1.258 12 N -0.540 5.540 13 C 0.217 3.783 14 C 0.044 3.956 15 O -0.474 6.474 16 C -0.090 4.090 17 C -0.220 4.220 18 C -0.019 4.019 19 C -0.286 4.286 20 C 0.556 3.444 21 O -0.567 6.567 22 H 0.079 0.921 23 H 0.066 0.934 24 H 0.064 0.936 25 H 0.284 0.716 26 H 0.368 0.632 27 H 0.114 0.886 28 H 0.110 0.890 29 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.256 0.871 -1.429 1.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.291 5.291 3 C 0.208 3.792 4 C -0.432 4.432 5 H 0.117 0.883 6 C -0.172 4.172 7 N -0.274 5.274 8 Si 0.744 3.256 9 H -0.190 1.190 10 H -0.195 1.195 11 H -0.181 1.181 12 N -0.265 5.265 13 C 0.086 3.914 14 C -0.003 4.003 15 O -0.281 6.281 16 C -0.110 4.110 17 C -0.240 4.240 18 C -0.038 4.038 19 C -0.294 4.294 20 C 0.352 3.648 21 O -0.448 6.448 22 H 0.097 0.903 23 H 0.084 0.916 24 H 0.083 0.917 25 H 0.096 0.904 26 H 0.221 0.779 27 H 0.132 0.868 28 H 0.128 0.872 29 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -0.083 1.065 -0.801 1.335 hybrid contribution -0.680 -0.013 -0.404 0.791 sum -0.763 1.052 -1.205 1.772 Atomic orbital electron populations 1.21701 0.79715 1.03087 1.02097 1.46781 1.08100 1.07442 1.66777 1.19864 0.87693 0.83336 0.88341 1.19539 0.95458 0.88755 1.39412 0.88327 1.26111 0.95331 1.01105 0.94605 1.70110 1.08356 1.27910 1.21024 0.86059 0.80366 0.79458 0.79718 1.18982 1.19505 1.18141 1.69566 0.99970 1.23414 1.33523 1.19529 0.94078 0.88472 0.89280 1.17979 0.87902 0.84782 1.09663 1.84782 1.78722 1.32867 1.31769 1.21143 0.98875 0.92033 0.98972 1.20399 0.93773 0.96307 1.13564 1.20709 0.93152 0.96754 0.93225 1.20282 0.91814 0.95323 1.22009 1.18406 0.87919 0.82866 0.75576 1.90660 1.71373 1.29184 1.53594 0.90256 0.91558 0.91704 0.90417 0.77852 0.86834 0.87158 0.86809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.45 9.21 59.85 0.55 2.00 15 2 N -0.57 -13.32 3.06 -124.08 -0.38 -13.70 15 3 C 0.43 10.85 7.31 -155.96 -1.14 9.71 15 4 C -0.40 -9.09 8.56 -38.14 -0.33 -9.42 15 5 H 0.10 1.99 6.31 -52.49 -0.33 1.66 15 6 C 0.06 1.34 5.49 -17.28 -0.09 1.25 15 7 N -0.66 -15.43 11.39 55.57 0.63 -14.80 15 8 Si 0.92 15.89 29.57 -169.99 -5.03 10.86 15 9 H -0.26 -4.60 7.11 56.52 0.40 -4.20 15 10 H -0.27 -4.60 7.11 56.52 0.40 -4.20 15 11 H -0.26 -4.30 7.11 56.52 0.40 -3.90 15 12 N -0.54 -14.20 7.47 -10.22 -0.08 -14.28 15 13 C 0.22 5.47 6.64 -84.62 -0.56 4.91 15 14 C 0.04 1.00 6.77 -38.47 -0.26 0.74 15 15 O -0.47 -10.19 13.31 -18.69 -0.25 -10.44 15 16 C -0.09 -1.75 9.95 -39.41 -0.39 -2.15 15 17 C -0.22 -4.21 10.02 -39.40 -0.39 -4.61 15 18 C -0.02 -0.41 9.66 -39.29 -0.38 -0.79 15 19 C -0.29 -6.99 5.90 -104.60 -0.62 -7.61 15 20 C 0.56 13.86 7.67 -12.34 -0.09 13.77 15 21 O -0.57 -14.48 16.04 5.21 0.08 -14.40 15 22 H 0.08 1.45 6.96 -51.93 -0.36 1.09 15 23 H 0.07 1.12 7.94 -51.93 -0.41 0.71 15 24 H 0.06 1.08 7.75 -51.93 -0.40 0.68 15 25 H 0.28 6.00 8.29 -40.82 -0.34 5.66 15 26 H 0.37 6.44 9.06 45.56 0.41 6.85 15 27 H 0.11 1.87 8.06 -52.48 -0.42 1.45 15 28 H 0.11 1.75 8.06 -52.49 -0.42 1.33 15 29 H 0.11 2.31 7.79 -52.49 -0.41 1.90 15 LS Contribution 259.56 15.07 3.91 3.91 Total: -1.00 -29.72 259.56 -6.30 -36.02 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -1.48 Total: 9.02 kcal Atomic # 6 Polarization: 11.52 SS G_CDS: -3.71 Total: 7.80 kcal Atomic # 7 Polarization: -42.95 SS G_CDS: 0.18 Total: -42.77 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -0.17 Total: -24.84 kcal Atomic # 14 Polarization: 15.89 SS G_CDS: -5.03 Total: 10.86 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -29.72 -6.30 -36.02 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260009919.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.169 kcal (2) G-P(sol) polarization free energy of solvation -29.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds