Wall clock time and date at job start Mon Mar 30 2020 03:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00286 * 2 1 4 4 H 1.48502 * 109.46914 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47340 * 300.00229 * 3 2 1 6 6 H 1.48502 * 109.47055 * 60.00447 * 3 2 1 7 7 C 1.37880 * 119.99865 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00181 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99838 * 0.02562 * 7 2 1 10 10 C 1.50695 * 109.46871 * 180.02562 * 9 7 2 11 11 N 1.32390 * 118.54735 * 89.99799 * 10 9 7 12 12 C 1.32454 * 121.54713 * 179.97438 * 11 10 9 13 13 O 1.35287 * 120.87198 * 179.72760 * 12 11 10 14 14 C 1.41306 * 118.25755 * 0.02562 * 12 11 10 15 15 C 1.40097 * 121.98677 * 179.97438 * 14 12 11 16 16 C 1.36144 * 119.71753 * 180.02562 * 15 14 12 17 17 C 1.39813 * 120.84666 * 0.04385 * 16 15 14 18 18 O 1.35797 * 119.61791 * 179.97438 * 17 16 15 19 19 C 1.37837 * 120.76469 * 359.97438 * 17 16 15 20 20 C 1.39984 * 119.44835 * 0.02562 * 19 17 16 21 21 N 1.31163 * 118.54067 * 270.01650 * 10 9 7 22 22 H 0.97003 * 119.99285 * 359.97438 * 1 2 3 23 23 H 1.08993 * 109.47411 * 59.99692 * 9 7 2 24 24 H 1.08999 * 109.46783 * 299.99494 * 9 7 2 25 25 H 0.96703 * 114.00146 * 89.99953 * 13 12 11 26 26 H 1.08001 * 120.14044 * 0.02624 * 15 14 12 27 27 H 1.08001 * 119.58016 * 180.02562 * 16 15 14 28 28 H 0.96695 * 113.99848 * 270.02531 * 18 17 16 29 29 H 1.08001 * 120.27426 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8906 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 2.2302 -3.6446 -0.0015 11 7 2.6404 -4.1260 1.1616 12 6 3.4995 -5.1317 1.2311 13 8 3.9138 -5.6094 2.4271 14 6 3.9769 -5.6885 0.0233 15 6 4.8872 -6.7533 0.0057 16 6 5.3173 -7.2539 -1.1851 17 6 4.8628 -6.7185 -2.3940 18 8 5.3085 -7.2368 -3.5673 19 6 3.9674 -5.6706 -2.4086 20 6 3.5106 -5.1387 -1.1970 21 7 2.6385 -4.1202 -1.1536 22 1 -0.4849 0.8401 0.0004 23 1 0.6246 -2.5563 -0.8919 24 1 0.6240 -2.5575 0.8881 25 1 3.3624 -6.3219 2.7785 26 1 5.2463 -7.1751 0.9328 27 1 6.0188 -8.0750 -1.1961 28 1 6.1094 -6.8133 -3.9053 29 1 3.6212 -5.2633 -3.3471 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260019375.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:07 Heat of formation + Delta-G solvation = -19.278818 kcal Electronic energy + Delta-G solvation = -16743.304516 eV Core-core repulsion = 13825.122466 eV Total energy + Delta-G solvation = -2918.182050 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.14784 -38.90520 -37.57362 -36.13357 -33.19696 -32.87827 -30.72200 -30.12463 -28.06622 -24.45326 -23.92294 -22.21029 -21.91430 -19.20421 -18.51136 -17.85654 -16.82456 -16.53499 -16.04030 -15.32056 -15.01090 -14.53190 -14.10775 -13.92924 -13.04895 -12.90203 -12.57547 -12.34896 -11.93157 -11.51757 -11.41332 -10.99087 -10.81504 -10.69323 -10.52656 -10.32703 -9.69100 -9.48357 -8.80169 -8.78089 -8.46239 -8.08852 -6.08949 -4.11594 0.35256 0.87544 1.95386 2.98383 3.30279 3.37055 3.42649 3.51208 3.90431 4.28392 4.46434 4.53889 4.69531 4.77806 4.89333 5.17614 5.28395 5.37897 5.57096 5.87985 5.98305 6.11691 6.24266 6.44747 6.74418 7.36092 7.41136 7.44801 7.47594 7.51775 7.84824 8.16881 8.75330 8.87864 9.50347 11.01966 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.027612 B = 0.005975 C = 0.005348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.816995 B = 4685.292915 C = 5233.919076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.062 3.938 3 Si 0.902 3.098 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.506 4.506 8 H 0.055 0.945 9 C 0.077 3.923 10 C 0.394 3.606 11 N -0.530 5.530 12 C 0.395 3.605 13 O -0.473 6.473 14 C -0.207 4.207 15 C -0.044 4.044 16 C -0.165 4.165 17 C 0.141 3.859 18 O -0.498 6.498 19 C -0.136 4.136 20 C 0.192 3.808 21 N -0.516 5.516 22 H 0.264 0.736 23 H 0.053 0.947 24 H 0.052 0.948 25 H 0.405 0.595 26 H 0.137 0.863 27 H 0.133 0.867 28 H 0.394 0.606 29 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.824 -14.868 -1.295 17.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.730 3.270 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.545 4.545 8 H 0.073 0.927 9 C 0.038 3.962 10 C 0.130 3.870 11 N -0.254 5.254 12 C 0.193 3.807 13 O -0.280 6.280 14 C -0.213 4.213 15 C -0.065 4.065 16 C -0.184 4.184 17 C 0.093 3.907 18 O -0.308 6.308 19 C -0.155 4.155 20 C 0.063 3.937 21 N -0.232 5.232 22 H 0.073 0.927 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.264 0.736 26 H 0.155 0.845 27 H 0.150 0.850 28 H 0.251 0.749 29 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 8.968 -13.958 -1.403 16.650 hybrid contribution 1.233 0.146 0.140 1.250 sum 10.201 -13.811 -1.263 17.217 Atomic orbital electron populations 1.69951 1.05946 1.26983 1.50053 1.24925 0.94963 0.99212 0.94908 0.86370 0.79969 0.83029 0.77679 1.19791 1.20779 1.20769 1.20798 0.92846 0.89133 1.51731 0.92694 1.18374 0.91220 0.86578 1.00007 1.24327 0.90689 0.91625 0.80348 1.68008 1.13401 1.11511 1.32468 1.19733 0.87925 0.88644 0.84403 1.84629 1.53585 1.56668 1.33140 1.19588 1.05006 1.01916 0.94778 1.20676 0.93910 0.93507 0.98390 1.21077 1.03191 1.02541 0.91586 1.18421 0.95029 0.91901 0.85325 1.84769 1.48068 1.61609 1.36398 1.21145 1.00138 0.96482 0.97731 1.18827 0.91914 0.91256 0.91688 1.68959 1.13459 1.10840 1.29938 0.92659 0.92861 0.93017 0.73554 0.84482 0.84958 0.74933 0.83669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.21 13.29 55.43 0.74 -25.47 15 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 15 3 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 15 4 H -0.27 -6.60 7.11 56.52 0.40 -6.20 15 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 15 7 C -0.51 -14.59 9.09 -34.44 -0.31 -14.90 15 8 H 0.05 1.61 7.74 -52.49 -0.41 1.20 15 9 C 0.08 2.05 5.38 -29.03 -0.16 1.90 15 10 C 0.39 9.40 6.81 -157.22 -1.07 8.33 15 11 N -0.53 -11.64 10.30 -10.43 -0.11 -11.75 15 12 C 0.39 6.99 7.89 -16.12 -0.13 6.86 15 13 O -0.47 -6.41 12.91 -17.55 -0.23 -6.64 15 14 C -0.21 -3.42 5.75 -106.70 -0.61 -4.03 15 15 C -0.04 -0.55 9.59 -39.64 -0.38 -0.93 15 16 C -0.17 -1.86 9.89 -39.75 -0.39 -2.25 15 17 C 0.14 1.77 6.69 -39.14 -0.26 1.51 15 18 O -0.50 -5.14 13.47 -19.11 -0.26 -5.39 15 19 C -0.14 -2.10 9.97 -39.07 -0.39 -2.49 15 20 C 0.19 3.59 6.61 -84.86 -0.56 3.03 15 21 N -0.52 -11.57 10.32 -8.82 -0.09 -11.66 15 22 H 0.26 7.27 8.31 -40.82 -0.34 6.93 15 23 H 0.05 1.47 8.14 -51.93 -0.42 1.05 15 24 H 0.05 1.43 8.14 -51.93 -0.42 1.00 15 25 H 0.41 3.11 9.06 45.56 0.41 3.53 15 26 H 0.14 1.29 7.71 -52.49 -0.40 0.88 15 27 H 0.13 1.11 8.06 -52.49 -0.42 0.69 15 28 H 0.39 2.09 9.06 45.56 0.41 2.50 15 29 H 0.15 2.15 8.06 -52.49 -0.42 1.73 15 LS Contribution 268.57 15.07 4.05 4.05 Total: -1.00 -34.49 268.57 -6.09 -40.58 By element: Atomic # 1 Polarization: 1.52 SS G_CDS: -0.81 Total: 0.71 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: -4.36 Total: -1.30 kcal Atomic # 7 Polarization: -49.41 SS G_CDS: 0.54 Total: -48.88 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: -0.48 Total: -12.04 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -34.49 -6.09 -40.58 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260019375.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.306 kcal (2) G-P(sol) polarization free energy of solvation -34.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds