Wall clock time and date at job start Mon Mar 30 2020 03:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00286 * 2 1 4 4 H 1.48502 * 109.46914 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47340 * 300.00229 * 3 2 1 6 6 H 1.48502 * 109.47055 * 60.00447 * 3 2 1 7 7 C 1.37880 * 119.99865 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00181 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99838 * 0.02562 * 7 2 1 10 10 C 1.50695 * 109.46871 * 180.02562 * 9 7 2 11 11 N 1.32390 * 118.54735 * 89.99799 * 10 9 7 12 12 C 1.32454 * 121.54713 * 179.97438 * 11 10 9 13 13 O 1.35287 * 120.87198 * 179.72760 * 12 11 10 14 14 C 1.41306 * 118.25755 * 0.02562 * 12 11 10 15 15 C 1.40097 * 121.98677 * 179.97438 * 14 12 11 16 16 C 1.36144 * 119.71753 * 180.02562 * 15 14 12 17 17 C 1.39813 * 120.84666 * 0.04385 * 16 15 14 18 18 O 1.35797 * 119.61791 * 179.97438 * 17 16 15 19 19 C 1.37837 * 120.76469 * 359.97438 * 17 16 15 20 20 C 1.39984 * 119.44835 * 0.02562 * 19 17 16 21 21 N 1.31163 * 118.54067 * 270.01650 * 10 9 7 22 22 H 0.97003 * 119.99285 * 359.97438 * 1 2 3 23 23 H 1.08993 * 109.47411 * 59.99692 * 9 7 2 24 24 H 1.08999 * 109.46783 * 299.99494 * 9 7 2 25 25 H 0.96703 * 114.00146 * 89.99953 * 13 12 11 26 26 H 1.08001 * 120.14044 * 0.02624 * 15 14 12 27 27 H 1.08001 * 119.58016 * 180.02562 * 16 15 14 28 28 H 0.96695 * 113.99848 * 270.02531 * 18 17 16 29 29 H 1.08001 * 120.27426 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8906 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 2.2302 -3.6446 -0.0015 11 7 2.6404 -4.1260 1.1616 12 6 3.4995 -5.1317 1.2311 13 8 3.9138 -5.6094 2.4271 14 6 3.9769 -5.6885 0.0233 15 6 4.8872 -6.7533 0.0057 16 6 5.3173 -7.2539 -1.1851 17 6 4.8628 -6.7185 -2.3940 18 8 5.3085 -7.2368 -3.5673 19 6 3.9674 -5.6706 -2.4086 20 6 3.5106 -5.1387 -1.1970 21 7 2.6385 -4.1202 -1.1536 22 1 -0.4849 0.8401 0.0004 23 1 0.6246 -2.5563 -0.8919 24 1 0.6240 -2.5575 0.8881 25 1 3.3624 -6.3219 2.7785 26 1 5.2463 -7.1751 0.9328 27 1 6.0188 -8.0750 -1.1961 28 1 6.1094 -6.8133 -3.9053 29 1 3.6212 -5.2633 -3.3471 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260019375.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:07 Heat of formation + Delta-G solvation = -49.475769 kcal Electronic energy + Delta-G solvation = -16744.613954 eV Core-core repulsion = 13825.122466 eV Total energy + Delta-G solvation = -2919.491488 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.48284 -39.97357 -38.81907 -37.25596 -35.26809 -34.23613 -32.35363 -31.31334 -29.75560 -26.25058 -25.22114 -23.56049 -23.37910 -20.34357 -19.83642 -19.02221 -18.68642 -17.93363 -17.35242 -16.59469 -16.54424 -15.94762 -15.39102 -15.15405 -14.63290 -14.24936 -13.97716 -13.85971 -13.54778 -13.06862 -12.99948 -12.64881 -12.62798 -12.23614 -11.91502 -11.88787 -11.52210 -11.25446 -10.65656 -10.30250 -10.00029 -9.36994 -8.26892 -6.39019 -0.86449 -0.39503 0.72744 1.37584 1.39077 1.51962 1.80171 2.25053 2.37579 2.80748 2.96055 3.06277 3.18845 3.48125 3.56586 3.87013 4.09129 4.25697 4.42697 4.64917 4.83875 5.04575 5.13805 5.19855 5.29846 5.34638 5.51232 5.62455 5.99135 6.06921 6.47880 6.65567 6.75157 7.21080 7.27254 8.84670 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.027612 B = 0.005975 C = 0.005348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.816995 B = 4685.292915 C = 5233.919076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.012 3.988 3 Si 0.973 3.027 4 H -0.273 1.273 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.527 4.527 8 H 0.042 0.958 9 C 0.088 3.912 10 C 0.372 3.628 11 N -0.572 5.572 12 C 0.406 3.594 13 O -0.465 6.465 14 C -0.212 4.212 15 C -0.033 4.033 16 C -0.146 4.146 17 C 0.173 3.827 18 O -0.498 6.498 19 C -0.166 4.166 20 C 0.162 3.838 21 N -0.547 5.547 22 H 0.270 0.730 23 H 0.027 0.973 24 H 0.028 0.972 25 H 0.432 0.568 26 H 0.177 0.823 27 H 0.178 0.822 28 H 0.421 0.579 29 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.935 -17.017 -1.262 21.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.188 4.188 3 Si 0.797 3.203 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.566 4.566 8 H 0.060 0.940 9 C 0.049 3.951 10 C 0.106 3.894 11 N -0.298 5.298 12 C 0.205 3.795 13 O -0.276 6.276 14 C -0.218 4.218 15 C -0.053 4.053 16 C -0.164 4.164 17 C 0.125 3.875 18 O -0.313 6.313 19 C -0.186 4.186 20 C 0.035 3.965 21 N -0.264 5.264 22 H 0.079 0.921 23 H 0.045 0.955 24 H 0.046 0.954 25 H 0.296 0.704 26 H 0.195 0.805 27 H 0.196 0.804 28 H 0.283 0.717 29 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 12.109 -16.160 -1.373 20.240 hybrid contribution 0.435 0.518 0.046 0.678 sum 12.544 -15.642 -1.327 20.094 Atomic orbital electron populations 1.70057 1.07419 1.28294 1.50329 1.25851 0.95930 1.02905 0.94077 0.85290 0.78367 0.78274 0.78405 1.19709 1.19523 1.19488 1.20996 0.92372 0.90764 1.52429 0.93976 1.17938 0.91585 0.88098 0.97467 1.23413 0.91980 0.92280 0.81754 1.67816 1.16093 1.14147 1.31752 1.19882 0.86191 0.87300 0.86095 1.84587 1.53765 1.57710 1.31530 1.19777 1.05770 1.03015 0.93230 1.21092 0.91961 0.91558 1.00717 1.21555 1.02298 1.02436 0.90096 1.18498 0.92685 0.89477 0.86857 1.84708 1.49683 1.61386 1.35522 1.21197 1.02297 0.98589 0.96490 1.19204 0.92212 0.91118 0.93929 1.68757 1.15196 1.12829 1.29623 0.92101 0.95514 0.95397 0.70366 0.80543 0.80433 0.71734 0.84314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.34 13.29 21.45 0.28 -56.05 15 2 C 0.01 0.68 5.46 84.66 0.46 1.15 15 3 Si 0.97 45.90 29.54 68.60 2.03 47.92 15 4 H -0.27 -12.70 7.11 99.48 0.71 -11.99 15 5 H -0.27 -12.16 7.11 99.48 0.71 -11.45 15 6 H -0.27 -12.14 7.11 99.48 0.71 -11.43 15 7 C -0.53 -32.15 9.09 25.60 0.23 -31.91 15 8 H 0.04 2.60 7.74 -2.91 -0.02 2.58 15 9 C 0.09 5.10 5.38 29.10 0.16 5.26 15 10 C 0.37 19.00 6.81 138.76 0.95 19.95 15 11 N -0.57 -26.28 10.30 -299.88 -3.09 -29.37 15 12 C 0.41 14.16 7.89 85.35 0.67 14.83 15 13 O -0.46 -11.49 12.91 -85.72 -1.11 -12.60 15 14 C -0.21 -6.69 5.75 -21.21 -0.12 -6.81 15 15 C -0.03 -0.66 9.59 22.23 0.21 -0.45 15 16 C -0.15 -2.45 9.89 22.16 0.22 -2.23 15 17 C 0.17 3.70 6.69 22.56 0.15 3.85 15 18 O -0.50 -8.04 13.47 -91.28 -1.23 -9.27 15 19 C -0.17 -5.02 9.97 22.60 0.23 -4.79 15 20 C 0.16 6.14 6.61 40.08 0.26 6.41 15 21 N -0.55 -26.08 10.32 -181.81 -1.88 -27.96 15 22 H 0.27 15.25 8.31 -92.71 -0.77 14.48 15 23 H 0.03 1.63 8.14 -2.39 -0.02 1.61 15 24 H 0.03 1.69 8.14 -2.39 -0.02 1.67 15 25 H 0.43 5.34 9.06 -74.05 -0.67 4.67 15 26 H 0.18 2.17 7.71 -2.91 -0.02 2.15 15 27 H 0.18 1.55 8.06 -2.91 -0.02 1.53 15 28 H 0.42 2.43 9.06 -74.06 -0.67 1.76 15 29 H 0.14 4.21 8.06 -2.91 -0.02 4.19 15 Total: -1.00 -80.61 268.57 -1.69 -82.31 By element: Atomic # 1 Polarization: -0.11 SS G_CDS: -0.12 Total: -0.23 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: 3.42 Total: 5.24 kcal Atomic # 7 Polarization: -108.69 SS G_CDS: -4.68 Total: -113.38 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: -2.34 Total: -21.87 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.92 kcal Total: -80.61 -1.69 -82.31 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260019375.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.830 kcal (2) G-P(sol) polarization free energy of solvation -80.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds