Wall clock time and date at job start Mon Mar 30 2020 04:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.37773 * 119.84907 * 2 1 4 4 C 1.40142 * 118.61308 * 359.97438 * 3 2 1 5 5 H 1.08005 * 120.00080 * 0.02562 * 4 3 2 6 6 C 1.40428 * 120.00208 * 179.97438 * 4 3 2 7 7 N 1.30512 * 120.00181 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 120.00165 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.47123 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.47055 * 120.00251 * 8 6 4 11 11 H 1.48502 * 109.47112 * 240.00664 * 8 6 4 12 12 N 1.32130 * 122.77716 * 179.97438 * 3 2 1 13 13 C 1.33957 * 121.68587 * 0.02562 * 12 3 2 14 14 C 1.40158 * 121.34873 * 180.02562 * 13 12 3 15 15 C 1.38208 * 119.61164 * 179.97438 * 14 13 12 16 16 O 1.35746 * 119.65535 * 180.02562 * 15 14 13 17 17 C 1.39519 * 120.68801 * 359.97438 * 15 14 13 18 18 C 1.37924 * 120.60533 * 0.02732 * 17 15 14 19 19 C 1.39144 * 119.71735 * 359.95772 * 18 17 15 20 20 C 1.35320 * 119.85502 * 179.72326 * 2 1 3 21 21 O 1.21708 * 121.20271 * 0.02562 * 20 2 1 22 22 H 1.09001 * 109.47060 * 90.00520 * 1 2 3 23 23 H 1.09004 * 109.47073 * 210.00009 * 1 2 3 24 24 H 1.09000 * 109.47212 * 330.00092 * 1 2 3 25 25 H 0.96999 * 120.00873 * 179.97438 * 7 6 4 26 26 H 1.07999 * 120.19669 * 359.95573 * 14 13 12 27 27 H 0.96703 * 113.99913 * 90.00155 * 16 15 14 28 28 H 1.08000 * 119.69458 * 179.97438 * 17 15 14 29 29 H 1.08001 * 120.13824 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1508 1.1950 0.0000 4 6 1.4178 2.3894 -0.0006 5 1 0.3381 2.3604 -0.0005 6 6 2.0870 3.6240 0.0000 7 7 3.3916 3.6591 0.0005 8 14 1.1099 5.2161 -0.0015 9 1 -0.3423 4.9056 -0.0025 10 1 1.4462 6.0043 1.2112 11 1 1.4489 6.0038 -1.2138 12 7 3.4704 1.2625 0.0005 13 6 4.2313 0.1600 0.0005 14 6 5.6306 0.2398 0.0016 15 6 6.3808 -0.9209 0.0021 16 8 7.7361 -0.8446 0.0037 17 6 5.7597 -2.1702 0.0021 18 6 4.3841 -2.2705 0.0011 19 6 3.6083 -1.1154 0.0009 20 6 2.1387 -1.1736 0.0057 21 8 1.5497 -2.2387 0.0103 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3634 0.8900 0.5138 25 1 3.8540 4.5118 0.0005 26 1 6.1197 1.2027 0.0017 27 1 8.1278 -0.8228 0.8876 28 1 6.3616 -3.0669 0.0022 29 1 3.9112 -3.2415 0.0007 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260029700.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:20 Heat of formation + Delta-G solvation = -31.386594 kcal Electronic energy + Delta-G solvation = -17370.415716 eV Core-core repulsion = 14451.708633 eV Total energy + Delta-G solvation = -2918.707082 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.13516 -38.26727 -36.59550 -35.72213 -33.78173 -32.54843 -29.66927 -29.16442 -26.68269 -26.36299 -22.77411 -22.15813 -20.87461 -18.74232 -18.04641 -17.20968 -16.17300 -15.92448 -15.09851 -14.99942 -14.30078 -14.26693 -14.15875 -13.18260 -12.91514 -12.58090 -12.19258 -12.05468 -11.88212 -11.72124 -11.54479 -11.48026 -10.84886 -10.68762 -10.50536 -9.95810 -9.48322 -9.17764 -8.85414 -8.10861 -7.95561 -7.01313 -6.88731 -5.20019 1.72419 1.99014 2.80767 2.84580 2.90152 3.53135 3.54242 3.68415 3.80139 4.50607 4.80563 5.41486 5.43418 5.71692 5.83959 5.90534 5.99694 6.05579 6.20309 6.36599 6.44189 6.60805 6.64986 6.95615 7.04285 7.24638 7.36073 7.41659 7.63801 7.89683 8.01174 8.23889 8.35996 8.90778 9.74352 9.91060 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.023231 B = 0.008800 C = 0.006408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.983280 B = 3181.168923 C = 4368.448401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.567 5.567 3 C 0.440 3.560 4 C -0.404 4.404 5 H 0.101 0.899 6 C 0.065 3.935 7 N -0.667 5.667 8 Si 0.922 3.078 9 H -0.256 1.256 10 H -0.268 1.268 11 H -0.268 1.268 12 N -0.552 5.552 13 C 0.249 3.751 14 C -0.193 4.193 15 C 0.153 3.847 16 O -0.507 6.507 17 C -0.252 4.252 18 C 0.001 3.999 19 C -0.299 4.299 20 C 0.556 3.444 21 O -0.566 6.566 22 H 0.056 0.944 23 H 0.070 0.930 24 H 0.084 0.916 25 H 0.283 0.717 26 H 0.127 0.873 27 H 0.384 0.616 28 H 0.113 0.887 29 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.295 0.730 1.739 1.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.291 5.291 3 C 0.213 3.787 4 C -0.438 4.438 5 H 0.119 0.881 6 C -0.167 4.167 7 N -0.286 5.286 8 Si 0.745 3.255 9 H -0.180 1.180 10 H -0.193 1.193 11 H -0.192 1.192 12 N -0.278 5.278 13 C 0.120 3.880 14 C -0.214 4.214 15 C 0.107 3.893 16 O -0.316 6.316 17 C -0.273 4.273 18 C -0.018 4.018 19 C -0.307 4.307 20 C 0.353 3.647 21 O -0.448 6.448 22 H 0.074 0.926 23 H 0.089 0.911 24 H 0.102 0.898 25 H 0.095 0.905 26 H 0.145 0.855 27 H 0.239 0.761 28 H 0.131 0.869 29 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -0.154 0.965 1.123 1.489 hybrid contribution -0.576 -0.081 0.462 0.742 sum -0.730 0.884 1.586 1.957 Atomic orbital electron populations 1.21767 0.79662 1.03196 1.02033 1.46741 1.08109 1.07405 1.66844 1.19836 0.87675 0.83349 0.87797 1.19656 0.95045 0.88517 1.40566 0.88085 1.26097 0.95248 1.01288 0.94096 1.70080 1.08429 1.28098 1.21970 0.86010 0.80602 0.79746 0.79176 1.17984 1.19258 1.19234 1.69639 1.00245 1.23502 1.34365 1.18898 0.93679 0.87994 0.87407 1.20815 0.91860 0.97546 1.11181 1.18397 0.81642 0.92254 0.97015 1.84710 1.17470 1.96484 1.32986 1.20781 0.94205 0.96269 1.16020 1.20548 0.92505 0.96924 0.91845 1.20453 0.91923 0.95702 1.22672 1.18366 0.87911 0.82814 0.75646 1.90674 1.71467 1.29242 1.53387 0.92554 0.91109 0.89778 0.90519 0.85495 0.76146 0.86890 0.86470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.43 9.84 59.85 0.59 2.02 15 2 N -0.57 -13.21 3.06 -124.13 -0.38 -13.59 15 3 C 0.44 10.91 7.32 -156.06 -1.14 9.76 15 4 C -0.40 -9.12 8.52 -38.04 -0.32 -9.44 15 5 H 0.10 2.00 5.73 -52.48 -0.30 1.70 15 6 C 0.06 1.40 5.50 -17.29 -0.10 1.31 15 7 N -0.67 -15.56 11.36 55.57 0.63 -14.93 15 8 Si 0.92 15.65 29.56 -169.99 -5.03 10.63 15 9 H -0.26 -4.20 7.11 56.52 0.40 -3.80 15 10 H -0.27 -4.53 7.11 56.52 0.40 -4.12 15 11 H -0.27 -4.55 7.11 56.52 0.40 -4.15 15 12 N -0.55 -14.42 7.64 -10.35 -0.08 -14.50 15 13 C 0.25 6.22 6.62 -84.80 -0.56 5.66 15 14 C -0.19 -4.34 9.97 -38.87 -0.39 -4.73 15 15 C 0.15 3.06 6.69 -39.12 -0.26 2.80 15 16 O -0.51 -8.57 13.47 -18.95 -0.26 -8.82 15 17 C -0.25 -4.95 9.97 -39.22 -0.39 -5.34 15 18 C 0.00 0.03 9.65 -39.36 -0.38 -0.35 15 19 C -0.30 -7.28 5.91 -104.56 -0.62 -7.89 15 20 C 0.56 13.79 7.66 -12.43 -0.10 13.69 15 21 O -0.57 -14.44 16.28 5.18 0.08 -14.36 15 22 H 0.06 0.96 8.14 -51.93 -0.42 0.54 15 23 H 0.07 1.27 7.46 -51.93 -0.39 0.88 15 24 H 0.08 1.39 6.02 -51.93 -0.31 1.07 15 25 H 0.28 5.87 8.29 -40.82 -0.34 5.53 15 26 H 0.13 2.83 8.06 -52.49 -0.42 2.40 15 27 H 0.38 4.41 9.06 45.56 0.41 4.82 15 28 H 0.11 1.91 8.06 -52.49 -0.42 1.49 15 29 H 0.12 2.37 7.80 -52.49 -0.41 1.96 15 LS Contribution 258.97 15.07 3.90 3.90 Total: -1.00 -29.69 258.97 -6.19 -35.87 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -1.40 Total: 8.33 kcal Atomic # 6 Polarization: 11.15 SS G_CDS: -3.67 Total: 7.48 kcal Atomic # 7 Polarization: -43.20 SS G_CDS: 0.17 Total: -43.03 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: -0.17 Total: -23.18 kcal Atomic # 14 Polarization: 15.65 SS G_CDS: -5.03 Total: 10.63 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -29.69 -6.19 -35.87 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260029700.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.487 kcal (2) G-P(sol) polarization free energy of solvation -29.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds