Wall clock time and date at job start Mon Mar 30 2020 04:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.37773 * 119.84907 * 2 1 4 4 C 1.40142 * 118.61308 * 359.97438 * 3 2 1 5 5 H 1.08005 * 120.00080 * 0.02562 * 4 3 2 6 6 C 1.40428 * 120.00208 * 179.97438 * 4 3 2 7 7 N 1.30512 * 120.00181 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 120.00165 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.47123 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.47055 * 120.00251 * 8 6 4 11 11 H 1.48502 * 109.47112 * 240.00664 * 8 6 4 12 12 N 1.32130 * 122.77716 * 179.97438 * 3 2 1 13 13 C 1.33957 * 121.68587 * 0.02562 * 12 3 2 14 14 C 1.40158 * 121.34873 * 180.02562 * 13 12 3 15 15 C 1.38208 * 119.61164 * 179.97438 * 14 13 12 16 16 O 1.35746 * 119.65535 * 180.02562 * 15 14 13 17 17 C 1.39519 * 120.68801 * 359.97438 * 15 14 13 18 18 C 1.37924 * 120.60533 * 0.02732 * 17 15 14 19 19 C 1.39144 * 119.71735 * 359.95772 * 18 17 15 20 20 C 1.35320 * 119.85502 * 179.72326 * 2 1 3 21 21 O 1.21708 * 121.20271 * 0.02562 * 20 2 1 22 22 H 1.09001 * 109.47060 * 90.00520 * 1 2 3 23 23 H 1.09004 * 109.47073 * 210.00009 * 1 2 3 24 24 H 1.09000 * 109.47212 * 330.00092 * 1 2 3 25 25 H 0.96999 * 120.00873 * 179.97438 * 7 6 4 26 26 H 1.07999 * 120.19669 * 359.95573 * 14 13 12 27 27 H 0.96703 * 113.99913 * 90.00155 * 16 15 14 28 28 H 1.08000 * 119.69458 * 179.97438 * 17 15 14 29 29 H 1.08001 * 120.13824 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1508 1.1950 0.0000 4 6 1.4178 2.3894 -0.0006 5 1 0.3381 2.3604 -0.0005 6 6 2.0870 3.6240 0.0000 7 7 3.3916 3.6591 0.0005 8 14 1.1099 5.2161 -0.0015 9 1 -0.3423 4.9056 -0.0025 10 1 1.4462 6.0043 1.2112 11 1 1.4489 6.0038 -1.2138 12 7 3.4704 1.2625 0.0005 13 6 4.2313 0.1600 0.0005 14 6 5.6306 0.2398 0.0016 15 6 6.3808 -0.9209 0.0021 16 8 7.7361 -0.8446 0.0037 17 6 5.7597 -2.1702 0.0021 18 6 4.3841 -2.2705 0.0011 19 6 3.6083 -1.1154 0.0009 20 6 2.1387 -1.1736 0.0057 21 8 1.5497 -2.2387 0.0103 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3634 0.8900 0.5138 25 1 3.8540 4.5118 0.0005 26 1 6.1197 1.2027 0.0017 27 1 8.1278 -0.8228 0.8876 28 1 6.3616 -3.0669 0.0022 29 1 3.9112 -3.2415 0.0007 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260029700.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:20 Heat of formation + Delta-G solvation = -51.589634 kcal Electronic energy + Delta-G solvation = -17371.291785 eV Core-core repulsion = 14451.708633 eV Total energy + Delta-G solvation = -2919.583152 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.89560 -39.85785 -38.40709 -37.30259 -35.47927 -34.24758 -31.34470 -30.90610 -28.36606 -27.98725 -24.50486 -23.82396 -22.61735 -20.38417 -19.72518 -18.89080 -17.79633 -17.62862 -16.82474 -16.61148 -15.97227 -15.88836 -15.71108 -14.76304 -14.61441 -14.20104 -13.88365 -13.68158 -13.49383 -13.30525 -13.11853 -12.98469 -12.38849 -12.21444 -11.93317 -11.49809 -11.09982 -10.99854 -10.57870 -9.88986 -9.63255 -8.78818 -8.54164 -6.96667 0.01425 0.27431 1.45419 1.45637 1.63628 1.70463 2.01469 2.06807 2.22582 2.86352 3.30213 3.64902 3.73010 4.03836 4.21991 4.34923 4.45912 4.54056 4.68118 4.71374 4.81252 4.98772 5.01929 5.27108 5.37984 5.58213 5.65615 5.81636 5.97959 6.15705 6.27997 6.55994 6.94869 7.10221 8.05018 8.22290 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.023231 B = 0.008800 C = 0.006408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.983280 B = 3181.168923 C = 4368.448401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.572 5.572 3 C 0.409 3.591 4 C -0.411 4.411 5 H 0.127 0.873 6 C 0.023 3.977 7 N -0.708 5.708 8 Si 1.004 2.996 9 H -0.241 1.241 10 H -0.266 1.266 11 H -0.267 1.267 12 N -0.583 5.583 13 C 0.224 3.776 14 C -0.215 4.215 15 C 0.175 3.825 16 O -0.504 6.504 17 C -0.239 4.239 18 C -0.004 4.004 19 C -0.330 4.330 20 C 0.544 3.456 21 O -0.586 6.586 22 H 0.070 0.930 23 H 0.073 0.927 24 H 0.104 0.896 25 H 0.291 0.709 26 H 0.119 0.881 27 H 0.412 0.588 28 H 0.149 0.851 29 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.440 1.185 1.857 2.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.295 5.295 3 C 0.183 3.817 4 C -0.444 4.444 5 H 0.144 0.856 6 C -0.206 4.206 7 N -0.327 5.327 8 Si 0.822 3.178 9 H -0.163 1.163 10 H -0.190 1.190 11 H -0.192 1.192 12 N -0.310 5.310 13 C 0.096 3.904 14 C -0.237 4.237 15 C 0.128 3.872 16 O -0.318 6.318 17 C -0.259 4.259 18 C -0.023 4.023 19 C -0.338 4.338 20 C 0.341 3.659 21 O -0.470 6.470 22 H 0.088 0.912 23 H 0.092 0.908 24 H 0.123 0.877 25 H 0.102 0.898 26 H 0.137 0.863 27 H 0.272 0.728 28 H 0.167 0.833 29 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.290 1.407 1.262 1.912 hybrid contribution -0.390 -0.250 0.435 0.636 sum -0.680 1.156 1.697 2.163 Atomic orbital electron populations 1.22006 0.77266 1.04335 1.03310 1.46835 1.09770 1.06652 1.66220 1.20296 0.87951 0.84374 0.89114 1.20226 0.96341 0.88388 1.39475 0.85579 1.27176 0.96048 1.04499 0.92845 1.70179 1.10491 1.29590 1.22435 0.84816 0.79560 0.74552 0.78899 1.16325 1.19046 1.19210 1.69589 1.01283 1.24510 1.35608 1.19208 0.94650 0.88216 0.88323 1.20877 0.91360 0.98353 1.13079 1.18352 0.82779 0.91526 0.94523 1.84637 1.15461 1.96292 1.35390 1.21119 0.93659 0.97350 1.13733 1.20761 0.93359 0.96546 0.91650 1.20668 0.92226 0.96513 1.24384 1.18595 0.88475 0.83104 0.75753 1.90632 1.71874 1.29683 1.54805 0.91151 0.90826 0.87724 0.89787 0.86262 0.72828 0.83296 0.85412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.66 9.84 127.77 1.26 3.91 15 2 N -0.57 -27.01 3.06 -664.53 -2.03 -29.04 15 3 C 0.41 20.65 7.32 133.81 0.98 21.63 15 4 C -0.41 -18.39 8.52 23.27 0.20 -18.19 15 5 H 0.13 4.78 5.73 -2.91 -0.02 4.76 15 6 C 0.02 0.98 5.50 85.42 0.47 1.45 15 7 N -0.71 -33.50 11.36 21.90 0.25 -33.25 15 8 Si 1.00 30.83 29.56 68.60 2.03 32.86 15 9 H -0.24 -6.73 7.11 99.48 0.71 -6.02 15 10 H -0.27 -8.04 7.11 99.48 0.71 -7.33 15 11 H -0.27 -8.16 7.11 99.48 0.71 -7.45 15 12 N -0.58 -31.50 7.64 -186.66 -1.43 -32.92 15 13 C 0.22 11.52 6.62 40.20 0.27 11.79 15 14 C -0.22 -9.81 9.97 22.73 0.23 -9.58 15 15 C 0.17 6.71 6.69 22.57 0.15 6.86 15 16 O -0.50 -15.60 13.47 -90.71 -1.22 -16.82 15 17 C -0.24 -8.83 9.97 22.50 0.22 -8.60 15 18 C 0.00 -0.15 9.65 22.41 0.22 0.06 15 19 C -0.33 -16.34 5.91 -19.82 -0.12 -16.46 15 20 C 0.54 27.55 7.66 86.48 0.66 28.21 15 21 O -0.59 -30.33 16.28 -4.38 -0.07 -30.41 15 22 H 0.07 2.33 8.14 -2.39 -0.02 2.31 15 23 H 0.07 2.61 7.46 -2.38 -0.02 2.59 15 24 H 0.10 3.29 6.02 -2.39 -0.01 3.28 15 25 H 0.29 12.21 8.29 -92.71 -0.77 11.44 15 26 H 0.12 5.48 8.06 -2.91 -0.02 5.45 15 27 H 0.41 8.05 9.06 -74.05 -0.67 7.38 15 28 H 0.15 4.43 8.06 -2.91 -0.02 4.41 15 29 H 0.13 5.07 7.80 -2.91 -0.02 5.05 15 Total: -1.00 -65.24 258.97 2.60 -62.64 By element: Atomic # 1 Polarization: 25.33 SS G_CDS: 0.54 Total: 25.87 kcal Atomic # 6 Polarization: 16.54 SS G_CDS: 4.53 Total: 21.08 kcal Atomic # 7 Polarization: -92.01 SS G_CDS: -3.21 Total: -95.22 kcal Atomic # 8 Polarization: -45.93 SS G_CDS: -1.29 Total: -47.23 kcal Atomic # 14 Polarization: 30.83 SS G_CDS: 2.03 Total: 32.86 kcal Total: -65.24 2.60 -62.64 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260029700.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.048 kcal (2) G-P(sol) polarization free energy of solvation -65.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds